Wall clock time and date at job start Tue Mar 31 2020 12:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47477 * 2 1 4 4 C 1.53008 * 109.46768 * 240.00265 * 2 1 3 5 5 C 1.53005 * 109.46818 * 175.00176 * 4 2 1 6 6 C 1.50699 * 109.46673 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00067 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99727 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99794 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00142 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47032 * 89.99693 * 10 8 6 12 12 H 1.48496 * 109.47112 * 210.00071 * 10 8 6 13 13 H 1.48504 * 109.46605 * 330.00145 * 10 8 6 14 14 N 1.46902 * 109.47100 * 120.00512 * 2 1 3 15 15 C 1.46947 * 110.99890 * 299.99776 * 14 2 1 16 16 C 1.53057 * 109.36663 * 183.18645 * 15 14 2 17 17 N 1.46959 * 109.36481 * 301.60269 * 16 15 14 18 18 C 1.46902 * 111.00040 * 183.18451 * 17 16 15 19 19 C 1.50697 * 109.47037 * 169.99752 * 18 17 16 20 20 C 1.38244 * 119.97201 * 89.99847 * 19 18 17 21 21 C 1.38205 * 120.02298 * 179.97438 * 20 19 18 22 22 C 1.38459 * 119.97412 * 0.24026 * 21 20 19 23 23 F 1.35099 * 120.02759 * 179.72396 * 22 21 20 24 24 C 1.38466 * 119.94836 * 359.48301 * 22 21 20 25 25 C 1.38196 * 119.97140 * 0.53984 * 24 22 21 26 26 C 1.46960 * 110.88288 * 59.31446 * 17 16 15 27 27 C 1.46959 * 111.00040 * 63.79926 * 14 2 1 28 28 H 1.09002 * 109.47145 * 59.99187 * 1 2 3 29 29 H 1.08996 * 109.47477 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47123 * 299.99499 * 1 2 3 31 31 H 1.08995 * 109.46897 * 295.00017 * 4 2 1 32 32 H 1.09004 * 109.46728 * 55.00217 * 4 2 1 33 33 H 1.09001 * 109.46915 * 299.99860 * 5 4 2 34 34 H 1.08995 * 109.46692 * 60.00280 * 5 4 2 35 35 H 0.97002 * 119.99999 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.49187 * 63.22246 * 15 14 2 37 37 H 1.08998 * 109.51075 * 303.16485 * 15 14 2 38 38 H 1.08993 * 109.49064 * 181.63122 * 16 15 14 39 39 H 1.08997 * 109.48233 * 61.56420 * 16 15 14 40 40 H 1.08994 * 109.46878 * 49.99845 * 18 17 16 41 41 H 1.09000 * 109.46638 * 289.99814 * 18 17 16 42 42 H 1.07999 * 119.98898 * 359.97438 * 20 19 18 43 43 H 1.08002 * 120.00949 * 179.97438 * 21 20 19 44 44 H 1.07997 * 120.00962 * 180.25357 * 24 22 21 45 45 H 1.08000 * 119.98525 * 179.74601 * 25 24 22 46 46 H 1.08999 * 109.48600 * 60.64452 * 26 17 16 47 47 H 1.08989 * 109.48881 * 180.71165 * 26 17 16 48 48 H 1.09002 * 109.48636 * 296.77873 * 27 14 2 49 49 H 1.09003 * 109.49356 * 56.81450 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5648 -0.6133 -1.3138 6 6 4.0670 -1.3231 -2.5446 7 1 3.3684 -1.8028 -3.2142 8 6 5.4182 -1.3592 -2.8166 9 7 6.2687 -0.7738 -2.0020 10 14 6.0407 -2.2385 -4.3426 11 1 6.0901 -1.2833 -5.4787 12 1 7.4022 -2.7727 -4.0854 13 1 5.1245 -3.3583 -4.6769 14 7 2.0197 -0.6926 1.1994 15 6 1.5485 -0.0263 2.4214 16 6 2.1435 -0.7289 3.6442 17 7 1.7480 -2.1442 3.6334 18 6 2.2376 -2.8368 4.8328 19 6 1.6139 -4.2063 4.9118 20 6 2.2391 -5.2855 4.3154 21 6 1.6682 -6.5420 4.3876 22 6 0.4672 -6.7189 5.0535 23 9 -0.0946 -7.9458 5.1200 24 6 -0.1552 -5.6384 5.6554 25 6 0.4173 -4.3828 5.5814 26 6 2.2191 -2.8105 2.4112 27 6 1.6241 -2.1079 1.1886 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.7515 -1.7714 -1.2057 32 1 1.6053 -0.2616 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9993 -1.0729 -0.4261 35 1 7.2193 -0.7995 -2.1931 36 1 0.4606 -0.0767 2.4668 37 1 1.8642 1.0169 2.4121 38 1 1.7724 -0.2545 4.5526 39 1 3.2305 -0.6549 3.6128 40 1 1.9678 -2.2630 5.7193 41 1 3.3220 -2.9339 4.7789 42 1 3.1739 -5.1465 3.7927 43 1 2.1566 -7.3848 3.9212 44 1 -1.0899 -5.7760 6.1786 45 1 -0.0700 -3.5390 6.0474 46 1 3.3070 -2.7601 2.3659 47 1 1.9031 -3.8536 2.4209 48 1 0.5371 -2.1819 1.2199 49 1 1.9947 -2.5823 0.2799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492405.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:13 Heat of formation + Delta-G solvation = -16.387772 kcal Electronic energy + Delta-G solvation = -27232.706122 eV Core-core repulsion = 23494.711174 eV Total energy + Delta-G solvation = -3737.994947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 320.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.07530 -39.93469 -38.93515 -36.46195 -33.46578 -32.25133 -31.41732 -30.72251 -30.62298 -29.02773 -26.77596 -25.16983 -24.01806 -23.63344 -23.01332 -21.55836 -21.18799 -20.08321 -18.69312 -17.84970 -16.57246 -16.38610 -16.10543 -15.95905 -15.75083 -15.02327 -14.87092 -14.59306 -14.49407 -14.35566 -14.02318 -13.82367 -13.66009 -13.44913 -13.17929 -12.69468 -12.54516 -12.23226 -12.15556 -11.94330 -11.66890 -11.52854 -11.49546 -11.33890 -11.16862 -10.98022 -10.88316 -10.67767 -10.44406 -10.37077 -10.05754 -9.58840 -9.30382 -9.20563 -8.89644 -8.82581 -8.33071 -8.25388 -7.73599 -5.90640 -3.92181 0.90102 1.02309 3.29206 3.35388 3.41736 3.44905 4.03888 4.05901 4.28057 4.46905 4.52106 4.55870 4.68952 4.94551 5.01483 5.06784 5.22650 5.28003 5.39714 5.44596 5.45674 5.49095 5.56416 5.59977 5.63532 5.69557 5.73451 5.76596 5.80163 5.90417 5.93572 6.01389 6.07117 6.14574 6.20050 6.28404 6.32130 6.35421 6.43319 6.66333 6.67297 6.89020 6.99439 7.04770 7.26477 7.55674 7.60165 7.83148 8.04268 8.18925 8.54730 9.16814 9.70740 11.20180 Molecular weight = 320.20amu Principal moments of inertia in cm(-1) A = 0.012143 B = 0.003031 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.236314 B = 9236.929949 C =10473.722975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.077 0.923 4 C -0.106 4.106 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.519 5.519 15 C 0.056 3.944 16 C 0.059 3.941 17 N -0.535 5.535 18 C 0.092 3.908 19 C -0.083 4.083 20 C -0.083 4.083 21 C -0.153 4.153 22 C 0.093 3.907 23 F -0.143 7.143 24 C -0.156 4.156 25 C -0.071 4.071 26 C 0.054 3.946 27 C 0.055 3.945 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.009 0.991 34 H 0.030 0.970 35 H 0.258 0.742 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.047 0.953 47 H 0.077 0.923 48 H 0.036 0.964 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 -5.256 17.786 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 H 0.095 0.905 4 C -0.144 4.144 5 C -0.006 4.006 6 C -0.558 4.558 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.243 5.243 15 C -0.073 4.073 16 C -0.069 4.069 17 N -0.259 5.259 18 C -0.035 4.035 19 C -0.083 4.083 20 C -0.102 4.102 21 C -0.172 4.172 22 C 0.074 3.926 23 F -0.122 7.122 24 C -0.175 4.175 25 C -0.089 4.089 26 C -0.074 4.074 27 C -0.073 4.073 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.028 0.972 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.065 0.935 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.065 0.935 47 H 0.095 0.905 48 H 0.054 0.946 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.943 -5.252 17.808 22.076 hybrid contribution 0.299 -0.720 -0.912 1.200 sum -11.645 -5.972 16.895 21.371 Atomic orbital electron populations 1.22492 0.98861 1.01619 1.01311 1.21844 0.91100 0.98666 0.90961 0.90458 1.21795 1.00825 0.98370 0.93402 1.18989 0.88017 0.96752 0.96869 1.21341 0.91841 1.34166 1.08445 0.93122 1.24993 0.97145 0.95764 0.96455 1.69979 1.02175 1.44316 1.36868 0.86696 0.78134 0.80007 0.83746 1.20820 1.21334 1.19999 1.62307 1.58975 1.01803 1.01259 1.22128 0.97675 0.97845 0.89647 1.22158 0.99010 0.87721 0.98034 1.62233 1.59760 1.02313 1.01642 1.21012 0.97102 0.91191 0.94200 1.19841 0.95502 0.95065 0.97940 1.21028 1.00053 0.91327 0.97752 1.21142 0.95339 0.99010 1.01685 1.17747 0.93779 0.80227 1.00883 1.91492 1.84788 1.41106 1.94799 1.21130 1.01550 0.92306 1.02519 1.20867 0.94284 0.96159 0.97629 1.22277 0.98530 0.97832 0.88727 1.22205 0.97711 0.89318 0.98100 0.92423 0.92791 0.93260 0.93208 0.93261 0.97226 0.95206 0.93239 0.94268 0.90662 0.90809 0.93671 0.89888 0.93516 0.84947 0.84742 0.84922 0.85004 0.93520 0.90520 0.94625 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 8.50 37.16 0.32 -2.28 16 2 C 0.08 1.39 2.43 -67.71 -0.16 1.23 16 3 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 4 C -0.11 -2.17 4.32 -26.72 -0.12 -2.28 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 N -0.52 -8.48 4.19 -226.48 -0.95 -9.43 16 15 C 0.06 0.74 5.13 -3.77 -0.02 0.72 16 16 C 0.06 0.70 5.61 -3.76 -0.02 0.68 16 17 N -0.53 -6.37 4.70 -235.91 -1.11 -7.48 16 18 C 0.09 0.90 5.12 -4.98 -0.03 0.88 16 19 C -0.08 -0.81 4.89 -104.62 -0.51 -1.32 16 20 C -0.08 -0.82 7.92 -39.59 -0.31 -1.13 16 21 C -0.15 -1.52 10.03 -39.51 -0.40 -1.91 16 22 C 0.09 0.97 7.30 -39.42 -0.29 0.68 16 23 F -0.14 -1.61 17.27 2.25 0.04 -1.57 16 24 C -0.16 -1.44 10.03 -39.51 -0.40 -1.84 16 25 C -0.07 -0.64 9.70 -39.59 -0.38 -1.02 16 26 C 0.05 0.74 5.25 -3.77 -0.02 0.72 16 27 C 0.05 0.85 4.84 -3.77 -0.02 0.83 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.77 6.56 -51.93 -0.34 0.42 16 30 H 0.05 0.63 6.48 -51.92 -0.34 0.30 16 31 H 0.05 1.00 6.00 -51.93 -0.31 0.69 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.03 0.82 7.75 -51.93 -0.40 0.42 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.04 0.52 6.48 -51.93 -0.34 0.18 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.68 7.97 -51.93 -0.41 0.27 16 41 H 0.05 0.47 8.06 -51.93 -0.42 0.05 16 42 H 0.13 1.22 7.99 -52.49 -0.42 0.80 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.99 5.95 -51.93 -0.31 0.68 16 48 H 0.04 0.54 6.56 -51.93 -0.34 0.20 16 49 H 0.09 1.63 5.95 -51.93 -0.31 1.32 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -30.71 381.83 -11.58 -42.29 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -8.13 Total: -1.10 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -2.90 Total: -18.92 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -1.32 Total: -43.29 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.71 -11.58 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492405.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.902 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds