Wall clock time and date at job start Tue Mar 31 2020 13:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00131 * 2 1 4 4 H 1.48494 * 109.46731 * 239.99366 * 3 2 1 5 5 H 1.48491 * 109.47040 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47087 * 119.99742 * 3 2 1 7 7 C 1.38816 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99819 * 174.60312 * 9 7 2 11 11 C 1.52998 * 110.01810 * 301.46435 * 10 9 7 12 12 N 1.46507 * 109.46951 * 303.89998 * 11 10 9 13 13 C 1.34776 * 119.99600 * 175.12821 * 12 11 10 14 14 O 1.21278 * 120.00267 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99584 * 180.02562 * 13 12 11 16 16 C 1.52948 * 109.40935 * 180.02562 * 15 13 12 17 17 C 1.53182 * 109.44590 * 183.02140 * 16 15 13 18 18 C 1.53145 * 108.88453 * 303.42468 * 17 16 15 19 19 C 1.52808 * 117.75333 * 199.62973 * 18 17 16 20 20 C 1.52849 * 117.67831 * 268.51140 * 18 17 16 21 21 C 1.53154 * 115.00710 * 53.93874 * 18 17 16 22 22 C 1.52934 * 109.35193 * 300.31762 * 15 13 12 23 23 C 1.54266 * 110.07350 * 62.88254 * 10 9 7 24 24 C 1.54893 * 104.19666 * 95.69345 * 23 10 9 25 25 C 1.54887 * 102.74754 * 37.94279 * 24 23 10 26 26 C 1.53879 * 110.03163 * 180.02562 * 10 9 7 27 27 H 0.97000 * 119.99691 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99704 * 354.60767 * 9 7 2 29 29 H 1.08998 * 109.47001 * 183.90682 * 11 10 9 30 30 H 1.09001 * 109.47220 * 63.90070 * 11 10 9 31 31 H 0.96996 * 119.99876 * 355.13408 * 12 11 10 32 32 H 1.08996 * 109.41553 * 60.14449 * 15 13 12 33 33 H 1.09001 * 109.47988 * 63.02645 * 16 15 13 34 34 H 1.09009 * 109.47292 * 303.00947 * 16 15 13 35 35 H 1.09007 * 109.56838 * 183.60136 * 17 16 15 36 36 H 1.08996 * 109.56875 * 63.24677 * 17 16 15 37 37 H 1.08997 * 117.49887 * 0.14525 * 19 18 17 38 38 H 1.08995 * 117.50045 * 215.10767 * 19 18 17 39 39 H 1.08993 * 117.50528 * 144.77630 * 20 18 17 40 40 H 1.09006 * 117.52661 * 359.70889 * 20 18 17 41 41 H 1.08996 * 109.56471 * 65.88682 * 21 18 17 42 42 H 1.08994 * 109.56939 * 186.25097 * 21 18 17 43 43 H 1.09005 * 109.47785 * 296.94357 * 22 15 13 44 44 H 1.08996 * 109.47543 * 56.95714 * 22 15 13 45 45 H 1.08997 * 110.48562 * 214.36945 * 23 10 9 46 46 H 1.09001 * 110.48583 * 337.01745 * 23 10 9 47 47 H 1.09005 * 110.75595 * 279.63333 * 24 23 10 48 48 H 1.09002 * 110.75674 * 156.25824 * 24 23 10 49 49 H 1.08999 * 110.48950 * 203.38102 * 25 24 23 50 50 H 1.08997 * 110.48835 * 80.73266 * 25 24 23 51 51 H 1.09004 * 110.03210 * 359.95147 * 26 10 9 52 52 H 1.08998 * 110.03570 * 121.38185 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0533 -3.6540 -0.1182 11 6 2.8624 -3.6732 -1.4166 12 7 1.9683 -3.4363 -2.5527 13 6 2.4758 -3.3118 -3.7951 14 8 3.6726 -3.3962 -3.9725 15 6 1.5561 -3.0675 -4.9637 16 6 2.3813 -2.9668 -6.2475 17 6 1.4557 -2.6437 -7.4246 18 6 0.3672 -3.7177 -7.5085 19 6 -0.3780 -3.8736 -8.8334 20 6 0.6358 -4.9330 -8.3956 21 6 -0.4226 -3.9413 -6.2155 22 6 0.5618 -4.2240 -5.0764 23 6 2.9915 -3.8410 1.0919 24 6 2.1742 -4.7158 2.0747 25 6 1.4383 -5.6965 1.1284 26 6 1.0658 -4.8339 -0.0939 27 1 -0.4850 0.8401 -0.0004 28 1 0.3588 -2.3899 0.0791 29 1 3.3445 -4.6442 -1.5300 30 1 3.6219 -2.8921 -1.3830 31 1 1.0111 -3.3691 -2.4108 32 1 1.0122 -2.1359 -4.8082 33 1 2.8851 -3.9157 -6.4312 34 1 3.1236 -2.1757 -6.1412 35 1 2.0317 -2.6345 -8.3500 36 1 0.9950 -1.6682 -7.2696 37 1 -0.0933 -3.2123 -9.6518 38 1 -1.4342 -4.1387 -8.7886 39 1 0.2464 -5.8951 -8.0627 40 1 1.5872 -4.9690 -8.9263 41 1 -1.0034 -3.0486 -5.9835 42 1 -1.0920 -4.7926 -6.3392 43 1 1.1013 -5.1484 -5.2829 44 1 0.0137 -4.3247 -4.1396 45 1 3.9040 -4.3558 0.7913 46 1 3.2272 -2.8777 1.5443 47 1 1.4610 -4.1079 2.6316 48 1 2.8353 -5.2559 2.7526 49 1 0.5405 -6.0874 1.6072 50 1 2.0999 -6.5110 0.8335 51 1 0.0452 -4.4647 0.0071 52 1 1.1623 -5.4205 -1.0075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753667269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:46 Heat of formation + Delta-G solvation = -34.730759 kcal Electronic energy + Delta-G solvation = -28509.685220 eV Core-core repulsion = 24894.355166 eV Total energy + Delta-G solvation = -3615.330054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.07097 -38.88537 -37.96311 -34.60102 -34.04514 -33.27576 -30.99461 -30.56693 -28.55081 -28.24267 -27.25971 -24.46604 -23.25491 -22.86054 -22.61273 -21.73488 -20.35556 -19.46955 -18.75374 -18.47044 -17.02162 -16.78441 -15.68308 -15.47911 -15.43740 -14.94394 -14.69800 -14.40148 -14.05877 -13.76719 -13.60818 -13.41607 -13.31736 -12.91154 -12.62842 -12.50659 -12.32643 -12.02734 -11.84450 -11.75688 -11.60507 -11.44499 -11.08641 -11.06913 -10.77004 -10.72926 -10.68866 -10.63408 -10.53087 -10.24269 -10.15238 -10.13774 -10.08987 -9.86178 -9.72641 -9.63796 -9.17717 -8.88543 -8.33078 -7.00690 -5.80548 -3.09209 3.19506 3.42833 3.47413 3.49461 3.62067 3.83687 4.46861 4.57003 4.61552 4.75825 4.84425 5.01236 5.07491 5.12108 5.16883 5.23121 5.26052 5.32582 5.47893 5.50385 5.52595 5.56841 5.69484 5.71076 5.75334 5.76619 5.82517 5.93279 5.94269 5.95796 5.98979 5.99421 6.04234 6.09135 6.14843 6.18629 6.20296 6.27407 6.31383 6.39573 6.45779 6.47290 6.57489 6.63473 6.77629 6.83732 7.02632 7.17319 7.70818 8.17246 8.38236 8.82727 9.50064 10.03999 10.39435 11.41441 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.003966 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.823743 B = 7058.289619 C = 8422.842219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.232 4.232 8 H 0.068 0.932 9 N -0.710 5.710 10 C 0.189 3.811 11 C 0.120 3.880 12 N -0.699 5.699 13 C 0.514 3.486 14 O -0.559 6.559 15 C -0.106 4.106 16 C -0.093 4.093 17 C -0.082 4.082 18 C -0.119 4.119 19 C -0.179 4.179 20 C -0.175 4.175 21 C -0.079 4.079 22 C -0.105 4.105 23 C -0.132 4.132 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.125 4.125 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.401 0.599 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.068 0.932 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -11.663 -10.645 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.731 3.269 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.352 5.352 10 C 0.097 3.903 11 C -0.006 4.006 12 N -0.348 5.348 13 C 0.300 3.700 14 O -0.439 6.439 15 C -0.127 4.127 16 C -0.131 4.131 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.216 4.216 20 C -0.212 4.212 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.173 4.173 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.163 4.163 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.236 0.764 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.087 0.913 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.703 -11.561 -10.759 15.808 hybrid contribution -0.284 1.140 0.114 1.180 sum -0.988 -10.421 -10.645 14.929 Atomic orbital electron populations 1.69636 1.04978 1.25680 1.57718 1.24662 0.95391 0.97422 1.02893 0.86375 0.78657 0.83917 0.77924 1.21326 1.21783 1.21315 1.19040 0.90963 0.83867 1.42427 0.91375 1.42533 1.05934 0.99447 1.87271 1.20453 0.91279 0.87136 0.91415 1.21847 0.93236 0.99352 0.86201 1.45741 1.11311 1.71532 1.06215 1.20500 0.88913 0.76325 0.84298 1.90632 1.16122 1.51641 1.85456 1.21279 0.96683 1.00806 0.93921 1.21276 0.96951 1.02866 0.91966 1.21184 0.95085 0.97213 0.98436 1.21523 0.99967 0.98751 0.91675 1.22978 0.97610 1.02907 0.98063 1.23003 1.00494 0.93853 1.03866 1.21142 0.96537 1.01750 0.92257 1.21474 0.96456 0.97611 0.98701 1.22831 0.97335 1.00267 0.96818 1.22387 0.98747 0.97074 0.97245 1.22284 0.99567 0.97631 0.96344 1.22410 0.99821 0.96363 0.97749 0.93568 0.78152 0.93366 0.91650 0.76401 0.88509 0.91446 0.91149 0.91791 0.91352 0.89045 0.89011 0.89049 0.89033 0.91052 0.91692 0.91544 0.91276 0.92961 0.90325 0.91418 0.92761 0.92389 0.92317 0.91345 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.55 13.06 55.49 0.73 -25.82 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.23 -5.98 8.39 -15.06 -0.13 -6.10 16 8 H 0.07 1.78 7.23 -52.49 -0.38 1.40 16 9 N -0.71 -15.86 4.76 -46.19 -0.22 -16.08 16 10 C 0.19 3.41 0.68 -130.70 -0.09 3.33 16 11 C 0.12 2.23 3.99 -4.04 -0.02 2.21 16 12 N -0.70 -12.32 4.97 -60.29 -0.30 -12.62 16 13 C 0.51 9.20 7.15 -10.98 -0.08 9.12 16 14 O -0.56 -11.86 15.95 5.56 0.09 -11.77 16 15 C -0.11 -1.49 2.44 -91.83 -0.22 -1.71 16 16 C -0.09 -1.23 4.52 -26.66 -0.12 -1.35 16 17 C -0.08 -0.89 5.67 -26.56 -0.15 -1.04 16 18 C -0.12 -1.20 1.97 -154.53 -0.31 -1.50 16 19 C -0.18 -1.57 9.99 -26.81 -0.27 -1.83 16 20 C -0.18 -1.60 9.93 -26.79 -0.27 -1.87 16 21 C -0.08 -0.81 5.67 -26.55 -0.15 -0.96 16 22 C -0.10 -1.22 5.12 -26.67 -0.14 -1.35 16 23 C -0.13 -2.28 5.94 -25.07 -0.15 -2.43 16 24 C -0.12 -1.75 6.91 -24.74 -0.17 -1.92 16 25 C -0.12 -1.63 6.83 -25.13 -0.17 -1.80 16 26 C -0.13 -1.89 5.80 -25.66 -0.15 -2.04 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.38 9.17 7.28 -40.82 -0.30 8.88 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.42 7.49 -51.93 -0.39 1.03 16 31 H 0.40 6.78 7.34 -40.82 -0.30 6.48 16 32 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.03 8.02 -51.92 -0.42 0.62 16 35 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.78 7.45 -51.93 -0.39 0.39 16 45 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 46 H 0.08 1.56 7.12 -51.93 -0.37 1.19 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.07 1.07 7.44 -51.93 -0.39 0.69 16 52 H 0.06 0.85 7.55 -51.93 -0.39 0.46 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -29.23 399.37 -11.00 -40.23 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -9.62 Total: 14.49 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -2.67 Total: -11.56 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.21 Total: -54.53 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.23 -11.00 -40.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.499 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds