Wall clock time and date at job start Tue Mar 31 2020 13:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00131 * 2 1 4 4 H 1.48494 * 109.46731 * 239.99366 * 3 2 1 5 5 H 1.48491 * 109.47040 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47087 * 119.99742 * 3 2 1 7 7 C 1.38816 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99819 * 174.60312 * 9 7 2 11 11 C 1.52998 * 110.01810 * 301.46435 * 10 9 7 12 12 N 1.46507 * 109.46951 * 303.89998 * 11 10 9 13 13 C 1.34776 * 119.99600 * 175.12821 * 12 11 10 14 14 O 1.21278 * 120.00267 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99584 * 180.02562 * 13 12 11 16 16 C 1.52948 * 109.40935 * 180.02562 * 15 13 12 17 17 C 1.53182 * 109.44590 * 183.02140 * 16 15 13 18 18 C 1.53145 * 108.88453 * 303.42468 * 17 16 15 19 19 C 1.52808 * 117.75333 * 199.62973 * 18 17 16 20 20 C 1.52849 * 117.67831 * 268.51140 * 18 17 16 21 21 C 1.53154 * 115.00710 * 53.93874 * 18 17 16 22 22 C 1.52934 * 109.35193 * 300.31762 * 15 13 12 23 23 C 1.54266 * 110.07350 * 62.88254 * 10 9 7 24 24 C 1.54893 * 104.19666 * 95.69345 * 23 10 9 25 25 C 1.54887 * 102.74754 * 37.94279 * 24 23 10 26 26 C 1.53879 * 110.03163 * 180.02562 * 10 9 7 27 27 H 0.97000 * 119.99691 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99704 * 354.60767 * 9 7 2 29 29 H 1.08998 * 109.47001 * 183.90682 * 11 10 9 30 30 H 1.09001 * 109.47220 * 63.90070 * 11 10 9 31 31 H 0.96996 * 119.99876 * 355.13408 * 12 11 10 32 32 H 1.08996 * 109.41553 * 60.14449 * 15 13 12 33 33 H 1.09001 * 109.47988 * 63.02645 * 16 15 13 34 34 H 1.09009 * 109.47292 * 303.00947 * 16 15 13 35 35 H 1.09007 * 109.56838 * 183.60136 * 17 16 15 36 36 H 1.08996 * 109.56875 * 63.24677 * 17 16 15 37 37 H 1.08997 * 117.49887 * 0.14525 * 19 18 17 38 38 H 1.08995 * 117.50045 * 215.10767 * 19 18 17 39 39 H 1.08993 * 117.50528 * 144.77630 * 20 18 17 40 40 H 1.09006 * 117.52661 * 359.70889 * 20 18 17 41 41 H 1.08996 * 109.56471 * 65.88682 * 21 18 17 42 42 H 1.08994 * 109.56939 * 186.25097 * 21 18 17 43 43 H 1.09005 * 109.47785 * 296.94357 * 22 15 13 44 44 H 1.08996 * 109.47543 * 56.95714 * 22 15 13 45 45 H 1.08997 * 110.48562 * 214.36945 * 23 10 9 46 46 H 1.09001 * 110.48583 * 337.01745 * 23 10 9 47 47 H 1.09005 * 110.75595 * 279.63333 * 24 23 10 48 48 H 1.09002 * 110.75674 * 156.25824 * 24 23 10 49 49 H 1.08999 * 110.48950 * 203.38102 * 25 24 23 50 50 H 1.08997 * 110.48835 * 80.73266 * 25 24 23 51 51 H 1.09004 * 110.03210 * 359.95147 * 26 10 9 52 52 H 1.08998 * 110.03570 * 121.38185 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0533 -3.6540 -0.1182 11 6 2.8624 -3.6732 -1.4166 12 7 1.9683 -3.4363 -2.5527 13 6 2.4758 -3.3118 -3.7951 14 8 3.6726 -3.3962 -3.9725 15 6 1.5561 -3.0675 -4.9637 16 6 2.3813 -2.9668 -6.2475 17 6 1.4557 -2.6437 -7.4246 18 6 0.3672 -3.7177 -7.5085 19 6 -0.3780 -3.8736 -8.8334 20 6 0.6358 -4.9330 -8.3956 21 6 -0.4226 -3.9413 -6.2155 22 6 0.5618 -4.2240 -5.0764 23 6 2.9915 -3.8410 1.0919 24 6 2.1742 -4.7158 2.0747 25 6 1.4383 -5.6965 1.1284 26 6 1.0658 -4.8339 -0.0939 27 1 -0.4850 0.8401 -0.0004 28 1 0.3588 -2.3899 0.0791 29 1 3.3445 -4.6442 -1.5300 30 1 3.6219 -2.8921 -1.3830 31 1 1.0111 -3.3691 -2.4108 32 1 1.0122 -2.1359 -4.8082 33 1 2.8851 -3.9157 -6.4312 34 1 3.1236 -2.1757 -6.1412 35 1 2.0317 -2.6345 -8.3500 36 1 0.9950 -1.6682 -7.2696 37 1 -0.0933 -3.2123 -9.6518 38 1 -1.4342 -4.1387 -8.7886 39 1 0.2464 -5.8951 -8.0627 40 1 1.5872 -4.9690 -8.9263 41 1 -1.0034 -3.0486 -5.9835 42 1 -1.0920 -4.7926 -6.3392 43 1 1.1013 -5.1484 -5.2829 44 1 0.0137 -4.3247 -4.1396 45 1 3.9040 -4.3558 0.7913 46 1 3.2272 -2.8777 1.5443 47 1 1.4610 -4.1079 2.6316 48 1 2.8353 -5.2559 2.7526 49 1 0.5405 -6.0874 1.6072 50 1 2.0999 -6.5110 0.8335 51 1 0.0452 -4.4647 0.0071 52 1 1.1623 -5.4205 -1.0075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753667269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:45 Heat of formation + Delta-G solvation = -50.150813 kcal Electronic energy + Delta-G solvation = -28510.353884 eV Core-core repulsion = 24894.355166 eV Total energy + Delta-G solvation = -3615.998717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.31253 -40.08246 -39.25455 -35.62410 -35.55469 -35.08550 -32.44457 -31.82672 -29.90374 -29.54467 -28.53327 -26.12950 -24.87186 -23.77030 -23.45497 -22.78363 -21.60768 -20.81941 -20.05877 -19.54728 -18.92571 -18.19140 -17.21204 -16.74022 -16.30880 -16.18577 -16.08689 -15.87902 -15.49399 -15.18724 -15.03207 -14.60604 -14.41191 -14.16438 -14.05782 -13.73797 -13.33582 -13.24447 -13.19641 -12.99720 -12.91542 -12.75930 -12.45378 -12.38303 -12.30963 -12.16819 -11.97337 -11.87624 -11.74905 -11.72450 -11.58258 -11.37847 -11.31671 -11.09026 -10.99498 -10.88651 -10.63280 -10.36362 -9.87178 -8.94325 -7.91107 -5.16086 1.43349 1.45055 1.49702 1.74350 2.39825 2.56640 2.92843 3.39969 3.61944 3.71267 3.77488 3.82654 3.87144 3.95850 3.99433 4.10357 4.15722 4.18001 4.25439 4.38821 4.43316 4.47796 4.55548 4.59200 4.66926 4.76566 4.83883 4.85770 4.87502 4.91914 4.97272 4.98415 5.04621 5.05767 5.10679 5.12413 5.14696 5.19485 5.21736 5.27600 5.28657 5.34665 5.40612 5.45250 5.48404 5.50606 5.59259 5.62306 5.70610 6.32841 6.71389 7.36885 7.40399 8.14053 8.38829 9.30949 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.003966 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.823743 B = 7058.289619 C = 8422.842219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.061 4.061 3 Si 0.947 3.053 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.283 1.283 7 C -0.215 4.215 8 H 0.059 0.941 9 N -0.713 5.713 10 C 0.185 3.815 11 C 0.126 3.874 12 N -0.696 5.696 13 C 0.507 3.493 14 O -0.596 6.596 15 C -0.099 4.099 16 C -0.088 4.088 17 C -0.076 4.076 18 C -0.134 4.134 19 C -0.168 4.168 20 C -0.174 4.174 21 C -0.075 4.075 22 C -0.098 4.098 23 C -0.133 4.133 24 C -0.113 4.113 25 C -0.112 4.112 26 C -0.119 4.119 27 H 0.248 0.752 28 H 0.376 0.624 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.406 0.594 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.049 0.951 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.063 0.937 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 -13.771 -11.394 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.254 4.254 3 Si 0.778 3.222 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.348 4.348 8 H 0.077 0.923 9 N -0.353 5.353 10 C 0.095 3.905 11 C 0.000 4.000 12 N -0.344 5.344 13 C 0.295 3.705 14 O -0.478 6.478 15 C -0.120 4.120 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.134 4.134 19 C -0.204 4.204 20 C -0.211 4.211 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.174 4.174 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.157 4.157 27 H 0.057 0.943 28 H 0.210 0.790 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.242 0.758 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.098 0.902 51 H 0.082 0.918 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.527 -13.699 -11.500 17.951 hybrid contribution 0.082 1.742 0.358 1.781 sum -1.445 -11.956 -11.142 16.407 Atomic orbital electron populations 1.69738 1.05747 1.25526 1.59902 1.25170 0.96056 0.99654 1.04489 0.85613 0.77535 0.81467 0.77549 1.21940 1.22050 1.20974 1.19166 0.90664 0.85188 1.39751 0.92274 1.42595 1.05589 1.00090 1.87058 1.20707 0.92014 0.86538 0.91276 1.21735 0.92726 0.98731 0.86837 1.45756 1.11386 1.71218 1.06072 1.21224 0.88961 0.75237 0.85105 1.90607 1.17893 1.53299 1.86015 1.21294 0.96505 1.01750 0.92497 1.21217 0.96939 1.01710 0.92742 1.21121 0.95041 0.97628 0.97532 1.21489 1.00322 0.99215 0.92406 1.23041 0.98055 1.02369 0.96974 1.23068 1.00820 0.93920 1.03308 1.21119 0.96206 1.02385 0.91530 1.21442 0.96060 0.96225 0.99807 1.22793 0.98270 0.99469 0.96821 1.22354 0.98509 0.96939 0.97221 1.22276 1.00551 0.97277 0.94827 1.22357 0.98418 0.95301 0.99639 0.94280 0.79017 0.91813 0.95396 0.75837 0.88932 0.92110 0.93328 0.90770 0.91489 0.88475 0.88003 0.88340 0.88976 0.91241 0.89973 0.91496 0.90845 0.91396 0.93576 0.93212 0.90434 0.90620 0.90235 0.91841 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.47 13.06 21.65 0.28 -55.19 16 2 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 3 Si 0.95 46.43 29.55 68.60 2.03 48.45 16 4 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.22 -11.33 8.39 84.03 0.70 -10.62 16 8 H 0.06 3.19 7.23 -2.91 -0.02 3.17 16 9 N -0.71 -32.15 4.76 -300.06 -1.43 -33.57 16 10 C 0.19 6.58 0.68 4.33 0.00 6.58 16 11 C 0.13 4.69 3.99 86.38 0.34 5.04 16 12 N -0.70 -24.54 4.97 -463.05 -2.30 -26.84 16 13 C 0.51 18.38 7.15 87.66 0.63 19.01 16 14 O -0.60 -25.92 15.95 -3.02 -0.05 -25.97 16 15 C -0.10 -2.79 2.44 -11.58 -0.03 -2.82 16 16 C -0.09 -2.35 4.52 30.64 0.14 -2.22 16 17 C -0.08 -1.57 5.67 30.70 0.17 -1.40 16 18 C -0.13 -2.42 1.97 -52.20 -0.10 -2.52 16 19 C -0.17 -2.48 9.99 30.54 0.31 -2.17 16 20 C -0.17 -2.76 9.93 30.55 0.30 -2.46 16 21 C -0.08 -1.36 5.67 30.71 0.17 -1.19 16 22 C -0.10 -2.13 5.12 30.63 0.16 -1.97 16 23 C -0.13 -4.51 5.94 31.67 0.19 -4.33 16 24 C -0.11 -3.13 6.91 31.89 0.22 -2.91 16 25 C -0.11 -2.63 6.83 31.63 0.22 -2.41 16 26 C -0.12 -3.34 5.80 31.29 0.18 -3.15 16 27 H 0.25 14.24 8.31 -92.71 -0.77 13.46 16 28 H 0.38 18.14 7.28 -92.71 -0.67 17.47 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.03 1.24 7.49 -2.39 -0.02 1.22 16 31 H 0.41 13.59 7.34 -92.71 -0.68 12.91 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 1.48 8.02 -2.38 -0.02 1.46 16 35 H 0.07 1.38 8.09 -2.38 -0.02 1.36 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 43 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.07 1.54 7.45 -2.39 -0.02 1.52 16 45 H 0.07 2.07 7.85 -2.39 -0.02 2.05 16 46 H 0.05 1.85 7.12 -2.39 -0.02 1.83 16 47 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 50 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.06 1.87 7.44 -2.38 -0.02 1.85 16 52 H 0.08 1.92 7.55 -2.39 -0.02 1.90 16 Total: -1.00 -64.11 399.37 2.14 -61.97 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.46 Total: 43.60 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.07 Total: -12.45 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -3.45 Total: -115.61 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -64.11 2.14 -61.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.822 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds