Wall clock time and date at job start Tue Mar 31 2020 13:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48506 * 109.46905 * 240.00294 * 3 2 1 5 5 H 1.48499 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47384 * 120.00244 * 3 2 1 7 7 C 1.38806 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00365 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00243 * 174.61097 * 9 7 2 11 11 C 1.53008 * 110.01571 * 301.52412 * 10 9 7 12 12 N 1.46495 * 109.47398 * 303.90040 * 11 10 9 13 13 C 1.34773 * 120.00133 * 175.12588 * 12 11 10 14 14 O 1.21279 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99812 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47494 * 59.99829 * 15 13 12 17 17 C 1.53001 * 109.47081 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.47143 * 359.97438 * 17 16 15 19 19 C 1.52995 * 109.47176 * 299.99921 * 18 17 16 20 20 C 1.53001 * 109.46918 * 180.02562 * 15 13 12 21 21 C 1.52998 * 109.46791 * 60.00034 * 18 17 16 22 22 C 1.52999 * 109.46910 * 299.99666 * 15 13 12 23 23 C 1.54255 * 110.03185 * 62.91440 * 10 9 7 24 24 C 1.54972 * 104.15851 * 95.75536 * 23 10 9 25 25 C 1.54891 * 102.77475 * 37.88919 * 24 23 10 26 26 C 1.53875 * 110.03264 * 180.13762 * 10 9 7 27 27 H 0.96996 * 120.00117 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99670 * 354.61694 * 9 7 2 29 29 H 1.08999 * 109.46839 * 183.89752 * 11 10 9 30 30 H 1.08997 * 109.47026 * 63.90173 * 11 10 9 31 31 H 0.97011 * 119.99894 * 355.12414 * 12 11 10 32 32 H 1.08994 * 109.47313 * 300.00373 * 16 15 13 33 33 H 1.09005 * 109.46872 * 59.99778 * 16 15 13 34 34 H 1.09002 * 109.46879 * 239.99630 * 17 16 15 35 35 H 1.08998 * 109.46802 * 120.00226 * 17 16 15 36 36 H 1.09003 * 109.46885 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47640 * 300.00076 * 19 18 17 38 38 H 1.08995 * 109.47190 * 179.97438 * 19 18 17 39 39 H 1.09005 * 109.46931 * 299.99905 * 20 15 13 40 40 H 1.08998 * 109.47416 * 59.99675 * 20 15 13 41 41 H 1.09003 * 109.47256 * 60.00161 * 21 18 17 42 42 H 1.09000 * 109.47070 * 179.97438 * 21 18 17 43 43 H 1.09008 * 109.47326 * 300.00313 * 22 15 13 44 44 H 1.08994 * 109.47429 * 60.00242 * 22 15 13 45 45 H 1.09002 * 110.49261 * 214.40028 * 23 10 9 46 46 H 1.09000 * 110.48846 * 337.04820 * 23 10 9 47 47 H 1.08999 * 110.72019 * 279.57219 * 24 23 10 48 48 H 1.09007 * 110.92267 * 156.29500 * 24 23 10 49 49 H 1.08998 * 110.48306 * 203.40398 * 25 24 23 50 50 H 1.08996 * 110.48365 * 80.76431 * 25 24 23 51 51 H 1.09000 * 110.02883 * 359.94601 * 26 10 9 52 52 H 1.09000 * 110.03435 * 121.38010 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0532 -3.6540 -0.1203 11 6 2.8627 -3.6720 -1.4185 12 7 1.9690 -3.4341 -2.5546 13 6 2.4768 -3.3083 -3.7967 14 8 3.6736 -3.3926 -3.9740 15 6 1.5573 -3.0629 -4.9653 16 6 0.7904 -1.7574 -4.7457 17 6 -0.1425 -1.5081 -5.9324 18 6 0.0030 -2.6471 -6.9436 19 6 1.4500 -2.7096 -7.4367 20 6 2.3818 -2.9607 -6.2502 21 6 -0.3657 -3.9729 -6.2748 22 6 0.5664 -4.2223 -5.0868 23 6 2.9912 -3.8408 1.0900 24 6 2.1734 -4.7178 2.0717 25 6 1.4377 -5.6976 1.1241 26 6 1.0655 -4.8337 -0.0986 27 1 -0.4850 0.8400 0.0004 28 1 0.3588 -2.3900 0.0786 29 1 3.3448 -4.6429 -1.5326 30 1 3.6222 -2.8911 -1.3840 31 1 1.0116 -3.3670 -2.4129 32 1 0.2031 -1.8306 -3.8304 33 1 1.4965 -0.9315 -4.6591 34 1 0.1205 -0.5637 -6.4091 35 1 -1.1732 -1.4631 -5.5810 36 1 -0.6620 -2.4696 -7.7889 37 1 1.7127 -1.7651 -7.9132 38 1 1.5537 -3.5213 -8.1567 39 1 3.0881 -2.1350 -6.1639 40 1 2.9279 -3.8910 -6.4065 41 1 -1.3966 -3.9283 -5.9235 42 1 -0.2625 -4.7843 -6.9953 43 1 1.1128 -5.1525 -5.2433 44 1 -0.0210 -4.2956 -4.1716 45 1 3.9042 -4.3549 0.7894 46 1 3.2262 -2.8775 1.5428 47 1 1.4602 -4.1104 2.6289 48 1 2.8319 -5.2588 2.7513 49 1 0.5398 -6.0888 1.6024 50 1 2.0994 -6.5118 0.8288 51 1 0.0449 -4.4644 0.0020 52 1 1.1629 -5.4191 -1.0129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753670905.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:43 Heat of formation + Delta-G solvation = -61.493135 kcal Electronic energy + Delta-G solvation = -29510.759983 eV Core-core repulsion = 25894.269426 eV Total energy + Delta-G solvation = -3616.490557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91111 -38.85178 -37.70598 -34.05766 -33.30532 -31.72978 -30.84608 -30.76417 -30.39997 -28.25964 -27.69243 -24.65646 -23.34279 -22.66734 -22.56417 -22.24724 -20.43319 -19.60344 -18.63479 -17.35491 -16.92541 -16.41652 -15.88351 -15.74438 -15.51967 -15.06162 -14.70689 -14.36194 -14.18414 -13.91055 -13.31493 -12.94151 -12.87508 -12.73804 -12.47004 -12.11247 -12.04145 -12.01615 -11.94426 -11.91991 -11.85956 -11.57329 -11.43412 -11.07447 -10.76225 -10.73035 -10.63363 -10.53238 -10.38005 -10.36405 -10.23760 -10.13596 -9.86221 -9.76450 -9.73303 -9.63055 -9.10585 -8.87430 -8.32315 -7.00139 -5.80087 -3.08630 3.18629 3.42614 3.47190 3.49400 3.80321 4.55159 4.57003 4.62035 4.73422 5.11069 5.12465 5.19153 5.23643 5.26184 5.33037 5.37442 5.41990 5.45174 5.46205 5.51212 5.54169 5.57619 5.65203 5.70072 5.79045 5.94288 5.95722 5.98687 6.02908 6.08943 6.14059 6.19047 6.23104 6.26438 6.30747 6.31487 6.36235 6.40095 6.43712 6.46334 6.49703 6.52181 6.58185 6.63724 6.77604 6.83783 7.02829 7.17815 7.71166 8.17833 8.38537 8.83101 9.50456 10.04206 10.39803 11.41782 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.005174 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.934552 B = 5410.133506 C = 6876.979609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.899 3.101 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.230 4.230 8 H 0.068 0.932 9 N -0.710 5.710 10 C 0.189 3.811 11 C 0.120 3.880 12 N -0.697 5.697 13 C 0.519 3.481 14 O -0.559 6.559 15 C -0.069 4.069 16 C -0.106 4.106 17 C -0.110 4.110 18 C -0.088 4.088 19 C -0.112 4.112 20 C -0.091 4.091 21 C -0.109 4.109 22 C -0.104 4.104 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.125 4.125 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.401 0.599 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.068 0.932 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 -10.321 -9.385 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.730 3.270 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.362 4.362 8 H 0.086 0.914 9 N -0.351 5.351 10 C 0.097 3.903 11 C -0.007 4.007 12 N -0.346 5.346 13 C 0.305 3.695 14 O -0.438 6.438 15 C -0.072 4.072 16 C -0.144 4.144 17 C -0.148 4.148 18 C -0.106 4.106 19 C -0.150 4.150 20 C -0.129 4.129 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.172 4.172 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.163 4.163 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.236 0.764 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.086 0.914 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.918 -10.220 -9.496 13.981 hybrid contribution -0.206 1.171 0.204 1.206 sum -1.123 -9.048 -9.293 13.019 Atomic orbital electron populations 1.69633 1.04920 1.25634 1.57734 1.24644 0.95384 0.97350 1.02939 0.86397 0.78672 0.84015 0.77913 1.21348 1.21805 1.21354 1.19022 0.90925 0.83845 1.42363 0.91430 1.42526 1.05922 0.99422 1.87246 1.20455 0.91285 0.87163 0.91407 1.21852 0.93252 0.99344 0.86210 1.45728 1.11298 1.71387 1.06155 1.20408 0.88726 0.76193 0.84221 1.90627 1.16042 1.51691 1.85416 1.20650 0.95360 0.97158 0.94009 1.21526 0.98340 0.95565 0.98939 1.21528 0.99688 0.97800 0.95743 1.21056 0.96595 0.95248 0.97698 1.21564 0.94580 1.01417 0.97405 1.21295 0.96840 1.02703 0.92095 1.21522 0.99089 0.97008 0.97071 1.21537 0.96703 0.96925 0.99062 1.22835 0.97305 1.00237 0.96796 1.22396 0.98766 0.97068 0.97222 1.22297 0.99558 0.97624 0.96327 1.22426 0.99812 0.96367 0.97741 0.93594 0.78165 0.93383 0.91647 0.76399 0.90574 0.91439 0.92012 0.91709 0.91344 0.92012 0.92155 0.91436 0.91617 0.91745 0.92053 0.91783 0.91437 0.92986 0.90313 0.91445 0.92774 0.92395 0.92323 0.91353 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.31 13.07 55.49 0.73 -25.58 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -5.90 8.39 -15.06 -0.13 -6.03 16 8 H 0.07 1.76 7.22 -52.48 -0.38 1.38 16 9 N -0.71 -15.74 4.76 -46.20 -0.22 -15.96 16 10 C 0.19 3.41 0.68 -130.70 -0.09 3.32 16 11 C 0.12 2.23 3.99 -4.04 -0.02 2.22 16 12 N -0.70 -12.40 4.88 -60.29 -0.29 -12.69 16 13 C 0.52 9.46 6.48 -10.98 -0.07 9.39 16 14 O -0.56 -12.02 15.98 5.56 0.09 -11.93 16 15 C -0.07 -1.00 0.61 -155.66 -0.10 -1.10 16 16 C -0.11 -1.59 4.89 -26.73 -0.13 -1.73 16 17 C -0.11 -1.34 5.71 -26.73 -0.15 -1.49 16 18 C -0.09 -0.93 3.19 -90.62 -0.29 -1.22 16 19 C -0.11 -1.24 5.71 -26.76 -0.15 -1.39 16 20 C -0.09 -1.27 4.27 -26.76 -0.11 -1.38 16 21 C -0.11 -1.13 5.71 -26.71 -0.15 -1.28 16 22 C -0.10 -1.27 4.89 -26.71 -0.13 -1.40 16 23 C -0.13 -2.27 5.95 -25.03 -0.15 -2.42 16 24 C -0.12 -1.75 6.91 -24.69 -0.17 -1.92 16 25 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 26 C -0.13 -1.90 5.80 -25.61 -0.15 -2.05 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.38 9.12 7.28 -40.82 -0.30 8.83 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.42 7.48 -51.93 -0.39 1.03 16 31 H 0.40 6.89 6.83 -40.82 -0.28 6.61 16 32 H 0.08 1.25 7.56 -51.93 -0.39 0.86 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 44 H 0.07 0.81 7.56 -51.93 -0.39 0.42 16 45 H 0.05 0.82 7.85 -51.93 -0.41 0.42 16 46 H 0.08 1.56 7.12 -51.93 -0.37 1.19 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.07 1.07 7.44 -51.93 -0.39 0.69 16 52 H 0.06 0.85 7.54 -51.93 -0.39 0.46 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -28.83 387.47 -10.72 -39.55 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -9.58 Total: 14.23 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.26 Total: -10.56 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.21 Total: -54.23 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.83 -10.72 -39.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670905.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.942 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds