Wall clock time and date at job start Tue Mar 31 2020 13:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48506 * 109.46905 * 240.00294 * 3 2 1 5 5 H 1.48499 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47384 * 120.00244 * 3 2 1 7 7 C 1.38806 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00365 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00243 * 174.61097 * 9 7 2 11 11 C 1.53008 * 110.01571 * 301.52412 * 10 9 7 12 12 N 1.46495 * 109.47398 * 303.90040 * 11 10 9 13 13 C 1.34773 * 120.00133 * 175.12588 * 12 11 10 14 14 O 1.21279 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.50706 * 119.99812 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47494 * 59.99829 * 15 13 12 17 17 C 1.53001 * 109.47081 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.47143 * 359.97438 * 17 16 15 19 19 C 1.52995 * 109.47176 * 299.99921 * 18 17 16 20 20 C 1.53001 * 109.46918 * 180.02562 * 15 13 12 21 21 C 1.52998 * 109.46791 * 60.00034 * 18 17 16 22 22 C 1.52999 * 109.46910 * 299.99666 * 15 13 12 23 23 C 1.54255 * 110.03185 * 62.91440 * 10 9 7 24 24 C 1.54972 * 104.15851 * 95.75536 * 23 10 9 25 25 C 1.54891 * 102.77475 * 37.88919 * 24 23 10 26 26 C 1.53875 * 110.03264 * 180.13762 * 10 9 7 27 27 H 0.96996 * 120.00117 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99670 * 354.61694 * 9 7 2 29 29 H 1.08999 * 109.46839 * 183.89752 * 11 10 9 30 30 H 1.08997 * 109.47026 * 63.90173 * 11 10 9 31 31 H 0.97011 * 119.99894 * 355.12414 * 12 11 10 32 32 H 1.08994 * 109.47313 * 300.00373 * 16 15 13 33 33 H 1.09005 * 109.46872 * 59.99778 * 16 15 13 34 34 H 1.09002 * 109.46879 * 239.99630 * 17 16 15 35 35 H 1.08998 * 109.46802 * 120.00226 * 17 16 15 36 36 H 1.09003 * 109.46885 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.47640 * 300.00076 * 19 18 17 38 38 H 1.08995 * 109.47190 * 179.97438 * 19 18 17 39 39 H 1.09005 * 109.46931 * 299.99905 * 20 15 13 40 40 H 1.08998 * 109.47416 * 59.99675 * 20 15 13 41 41 H 1.09003 * 109.47256 * 60.00161 * 21 18 17 42 42 H 1.09000 * 109.47070 * 179.97438 * 21 18 17 43 43 H 1.09008 * 109.47326 * 300.00313 * 22 15 13 44 44 H 1.08994 * 109.47429 * 60.00242 * 22 15 13 45 45 H 1.09002 * 110.49261 * 214.40028 * 23 10 9 46 46 H 1.09000 * 110.48846 * 337.04820 * 23 10 9 47 47 H 1.08999 * 110.72019 * 279.57219 * 24 23 10 48 48 H 1.09007 * 110.92267 * 156.29500 * 24 23 10 49 49 H 1.08998 * 110.48306 * 203.40398 * 25 24 23 50 50 H 1.08996 * 110.48365 * 80.76431 * 25 24 23 51 51 H 1.09000 * 110.02883 * 359.94601 * 26 10 9 52 52 H 1.09000 * 110.03435 * 121.38010 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0532 -3.6540 -0.1203 11 6 2.8627 -3.6720 -1.4185 12 7 1.9690 -3.4341 -2.5546 13 6 2.4768 -3.3083 -3.7967 14 8 3.6736 -3.3926 -3.9740 15 6 1.5573 -3.0629 -4.9653 16 6 0.7904 -1.7574 -4.7457 17 6 -0.1425 -1.5081 -5.9324 18 6 0.0030 -2.6471 -6.9436 19 6 1.4500 -2.7096 -7.4367 20 6 2.3818 -2.9607 -6.2502 21 6 -0.3657 -3.9729 -6.2748 22 6 0.5664 -4.2223 -5.0868 23 6 2.9912 -3.8408 1.0900 24 6 2.1734 -4.7178 2.0717 25 6 1.4377 -5.6976 1.1241 26 6 1.0655 -4.8337 -0.0986 27 1 -0.4850 0.8400 0.0004 28 1 0.3588 -2.3900 0.0786 29 1 3.3448 -4.6429 -1.5326 30 1 3.6222 -2.8911 -1.3840 31 1 1.0116 -3.3670 -2.4129 32 1 0.2031 -1.8306 -3.8304 33 1 1.4965 -0.9315 -4.6591 34 1 0.1205 -0.5637 -6.4091 35 1 -1.1732 -1.4631 -5.5810 36 1 -0.6620 -2.4696 -7.7889 37 1 1.7127 -1.7651 -7.9132 38 1 1.5537 -3.5213 -8.1567 39 1 3.0881 -2.1350 -6.1639 40 1 2.9279 -3.8910 -6.4065 41 1 -1.3966 -3.9283 -5.9235 42 1 -0.2625 -4.7843 -6.9953 43 1 1.1128 -5.1525 -5.2433 44 1 -0.0210 -4.2956 -4.1716 45 1 3.9042 -4.3549 0.7894 46 1 3.2262 -2.8775 1.5428 47 1 1.4602 -4.1104 2.6289 48 1 2.8319 -5.2588 2.7513 49 1 0.5398 -6.0888 1.6024 50 1 2.0994 -6.5118 0.8288 51 1 0.0449 -4.4644 0.0020 52 1 1.1629 -5.4191 -1.0129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753670905.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:42 Heat of formation + Delta-G solvation = -77.315835 kcal Electronic energy + Delta-G solvation = -29511.446107 eV Core-core repulsion = 25894.269426 eV Total energy + Delta-G solvation = -3617.176681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10043 -40.24916 -39.12094 -35.58122 -35.13947 -32.95121 -32.20471 -31.82289 -31.70616 -29.57105 -29.29485 -26.30301 -25.02797 -23.75181 -23.61743 -23.37534 -21.71614 -20.94927 -20.12450 -18.96727 -18.59937 -17.44281 -17.29485 -16.95126 -16.77745 -16.32245 -16.18584 -15.93369 -15.56712 -15.42995 -15.17939 -14.28973 -14.11528 -13.93980 -13.82756 -13.54143 -13.22968 -13.05056 -13.04426 -13.01104 -12.96163 -12.92564 -12.88588 -12.76480 -12.45932 -12.38898 -12.17619 -11.88945 -11.73902 -11.59211 -11.45239 -11.38768 -11.36193 -11.31942 -10.91739 -10.77786 -10.72920 -10.45568 -9.89275 -8.94525 -7.91464 -5.16160 1.41077 1.43017 1.47393 1.70466 2.38335 2.55297 3.39112 3.51083 3.59879 3.62449 3.76452 3.85259 3.94479 4.13019 4.14700 4.23235 4.33641 4.36489 4.38412 4.43629 4.44661 4.45999 4.47542 4.49626 4.58031 4.65747 4.72835 4.75396 4.85784 4.97203 5.03782 5.06334 5.11697 5.13330 5.14089 5.18478 5.25647 5.26659 5.33701 5.35162 5.37405 5.39400 5.46059 5.46551 5.47934 5.49308 5.57971 5.61345 5.68893 6.32238 6.68622 7.33933 7.39894 8.13147 8.38244 9.30387 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.005174 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.934552 B = 5410.133506 C = 6876.979609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.059 4.059 3 Si 0.944 3.056 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.283 1.283 7 C -0.213 4.213 8 H 0.058 0.942 9 N -0.711 5.711 10 C 0.185 3.815 11 C 0.126 3.874 12 N -0.693 5.693 13 C 0.510 3.490 14 O -0.597 6.597 15 C -0.063 4.063 16 C -0.103 4.103 17 C -0.107 4.107 18 C -0.084 4.084 19 C -0.107 4.107 20 C -0.091 4.091 21 C -0.105 4.105 22 C -0.102 4.102 23 C -0.132 4.132 24 C -0.112 4.112 25 C -0.111 4.111 26 C -0.119 4.119 27 H 0.248 0.752 28 H 0.376 0.624 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.405 0.595 32 H 0.056 0.944 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.049 0.951 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.063 0.937 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 -12.618 -10.613 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.252 4.252 3 Si 0.776 3.224 4 H -0.222 1.222 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.346 4.346 8 H 0.076 0.924 9 N -0.352 5.352 10 C 0.094 3.906 11 C -0.001 4.001 12 N -0.341 5.341 13 C 0.297 3.703 14 O -0.478 6.478 15 C -0.066 4.066 16 C -0.141 4.141 17 C -0.145 4.145 18 C -0.102 4.102 19 C -0.144 4.144 20 C -0.129 4.129 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.172 4.172 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.157 4.157 27 H 0.057 0.943 28 H 0.210 0.790 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.241 0.759 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.098 0.902 51 H 0.081 0.919 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.069 -12.544 -10.713 16.626 hybrid contribution 0.280 1.856 0.631 1.980 sum -1.789 -10.689 -10.082 14.802 Atomic orbital electron populations 1.69730 1.05608 1.25445 1.59852 1.25134 0.96056 0.99495 1.04552 0.85660 0.77585 0.81719 0.77471 1.22161 1.21993 1.20974 1.19122 0.90558 0.85171 1.39716 0.92449 1.42573 1.05558 1.00030 1.87016 1.20716 0.92039 0.86607 0.91239 1.21750 0.92737 0.98687 0.86893 1.45739 1.11325 1.71024 1.06039 1.21198 0.88835 0.75087 0.85139 1.90597 1.17842 1.53393 1.86017 1.20661 0.95296 0.98044 0.92604 1.21467 0.98045 0.94750 0.99840 1.21536 0.99063 0.98992 0.94884 1.21086 0.96654 0.94526 0.97909 1.21564 0.94091 1.02552 0.96229 1.21292 0.97042 1.01417 0.93123 1.21545 0.98933 0.97412 0.96397 1.21559 0.96377 0.95595 1.00432 1.22789 0.98215 0.99456 0.96767 1.22362 0.98521 0.96918 0.97189 1.22287 1.00565 0.97254 0.94765 1.22371 0.98398 0.95304 0.99638 0.94301 0.79023 0.91810 0.95483 0.75933 0.92498 0.94598 0.91746 0.90876 0.88587 0.91544 0.89990 0.94081 0.92052 0.90580 0.89974 0.91372 0.91432 0.91449 0.93559 0.93202 0.90404 0.90578 0.90231 0.91859 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.32 13.07 21.65 0.28 -55.04 16 2 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 3 Si 0.94 46.80 29.55 68.60 2.03 48.83 16 4 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 5 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.21 -11.28 8.39 84.03 0.70 -10.58 16 8 H 0.06 3.12 7.22 -2.91 -0.02 3.10 16 9 N -0.71 -32.26 4.76 -300.08 -1.43 -33.68 16 10 C 0.18 6.65 0.68 4.33 0.00 6.65 16 11 C 0.13 4.77 3.99 86.38 0.34 5.11 16 12 N -0.69 -25.18 4.88 -463.06 -2.26 -27.45 16 13 C 0.51 19.14 6.48 87.66 0.57 19.71 16 14 O -0.60 -26.67 15.98 -3.03 -0.05 -26.71 16 15 C -0.06 -1.85 0.61 -52.93 -0.03 -1.88 16 16 C -0.10 -3.18 4.89 30.59 0.15 -3.03 16 17 C -0.11 -2.47 5.71 30.60 0.17 -2.29 16 18 C -0.08 -1.50 3.19 -10.79 -0.03 -1.54 16 19 C -0.11 -2.10 5.71 30.58 0.17 -1.93 16 20 C -0.09 -2.50 4.27 30.58 0.13 -2.37 16 21 C -0.11 -1.79 5.71 30.61 0.17 -1.62 16 22 C -0.10 -2.29 4.89 30.61 0.15 -2.14 16 23 C -0.13 -4.51 5.95 31.69 0.19 -4.32 16 24 C -0.11 -3.14 6.91 31.91 0.22 -2.92 16 25 C -0.11 -2.64 6.83 31.67 0.22 -2.42 16 26 C -0.12 -3.39 5.80 31.32 0.18 -3.21 16 27 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.38 18.23 7.28 -92.71 -0.67 17.56 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.03 1.22 7.48 -2.39 -0.02 1.21 16 31 H 0.40 14.11 6.83 -92.70 -0.63 13.48 16 32 H 0.06 1.94 7.56 -2.39 -0.02 1.92 16 33 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.04 1.31 8.10 -2.38 -0.02 1.29 16 40 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.07 1.51 7.56 -2.39 -0.02 1.49 16 45 H 0.07 2.07 7.85 -2.39 -0.02 2.06 16 46 H 0.05 1.87 7.12 -2.39 -0.02 1.85 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 49 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 51 H 0.06 1.89 7.44 -2.39 -0.02 1.88 16 52 H 0.08 1.94 7.54 -2.39 -0.02 1.93 16 Total: -1.00 -65.06 387.47 1.94 -63.12 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -0.42 Total: 42.53 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 3.78 Total: -11.60 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -3.41 Total: -116.16 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -65.06 1.94 -63.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753670905.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.195 kcal (2) G-P(sol) polarization free energy of solvation -65.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds