Wall clock time and date at job start Tue Mar 31 2020 12:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46883 * 2 1 4 4 C 1.52990 * 109.47155 * 240.00267 * 2 1 3 5 5 C 1.53001 * 109.47334 * 185.48467 * 4 2 1 6 6 H 1.08997 * 109.46933 * 305.74612 * 5 4 2 7 7 C 1.53000 * 109.47152 * 185.74510 * 5 4 2 8 8 O 1.42904 * 109.47096 * 304.99893 * 7 5 4 9 9 N 1.46897 * 109.47129 * 65.74482 * 5 4 2 10 10 C 1.46898 * 110.99911 * 200.66836 * 9 5 4 11 11 C 1.50704 * 109.47211 * 179.97438 * 10 9 5 12 12 C 1.38290 * 119.92486 * 269.73288 * 11 10 9 13 13 C 1.38106 * 120.06903 * 179.72154 * 12 11 10 14 14 C 1.38911 * 119.92745 * 0.54480 * 13 12 11 15 15 N 1.39672 * 120.07519 * 179.74370 * 14 13 12 16 16 C 1.46497 * 120.00094 * 179.97438 * 15 14 13 17 17 C 1.46503 * 120.00066 * 359.97438 * 15 14 13 18 18 C 1.50706 * 109.46834 * 89.99843 * 17 15 14 19 19 H 1.07997 * 120.00006 * 359.97438 * 18 17 15 20 20 C 1.37884 * 119.99958 * 180.02562 * 18 17 15 21 21 N 1.31515 * 119.99405 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99997 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47167 * 89.99541 * 22 20 18 24 24 H 1.48504 * 109.46792 * 210.00019 * 22 20 18 25 25 H 1.48501 * 109.46994 * 329.99657 * 22 20 18 26 26 C 1.38914 * 119.84925 * 359.72927 * 14 13 12 27 27 C 1.38096 * 119.92576 * 359.97438 * 26 14 13 28 28 H 1.08992 * 109.47362 * 55.03476 * 1 2 3 29 29 H 1.09004 * 109.47045 * 175.03374 * 1 2 3 30 30 H 1.09005 * 109.47204 * 295.03121 * 1 2 3 31 31 H 1.08997 * 109.47141 * 119.99835 * 2 1 3 32 32 H 1.09007 * 109.47347 * 60.00060 * 3 2 1 33 33 H 1.08999 * 109.47480 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47640 * 300.00399 * 3 2 1 35 35 H 1.09003 * 109.47346 * 305.48383 * 4 2 1 36 36 H 1.09009 * 109.47391 * 65.48132 * 4 2 1 37 37 H 1.08997 * 109.47530 * 64.99985 * 7 5 4 38 38 H 1.09001 * 109.47003 * 184.99606 * 7 5 4 39 39 H 0.96703 * 113.99308 * 180.02562 * 8 7 5 40 40 H 1.00900 * 110.99900 * 324.62058 * 9 5 4 41 41 H 1.08992 * 109.47340 * 300.00120 * 10 9 5 42 42 H 1.09005 * 109.47014 * 60.00620 * 10 9 5 43 43 H 1.07996 * 119.96005 * 359.97216 * 12 11 10 44 44 H 1.07999 * 120.03299 * 180.26729 * 13 12 11 45 45 H 1.09013 * 109.46700 * 90.00722 * 16 15 14 46 46 H 1.09002 * 109.47305 * 209.99838 * 16 15 14 47 47 H 1.08999 * 109.47391 * 330.00826 * 16 15 14 48 48 H 1.08990 * 109.47300 * 209.99474 * 17 15 14 49 49 H 1.09000 * 109.47350 * 329.99956 * 17 15 14 50 50 H 0.97007 * 119.99055 * 180.02562 * 21 20 18 51 51 H 1.08000 * 120.03275 * 179.97438 * 26 14 13 52 52 H 1.08003 * 119.96511 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5638 -0.8417 -1.1822 6 1 3.9999 0.1454 -1.0291 7 6 4.0868 -1.4327 -2.4930 8 8 3.4279 -2.6740 -2.7522 9 7 3.9369 -1.7203 -0.0657 10 6 5.3281 -1.4881 0.3448 11 6 5.6737 -2.4048 1.4900 12 6 5.4683 -1.9888 2.7928 13 6 5.7786 -2.8286 3.8443 14 6 6.3081 -4.0879 3.5926 15 7 6.6279 -4.9377 4.6539 16 6 7.1857 -6.2657 4.3865 17 6 6.4057 -4.5010 6.0345 18 6 5.0171 -4.8946 6.4684 19 1 4.3653 -5.4172 5.7841 20 6 4.5785 -4.5864 7.7388 21 7 5.3722 -3.9495 8.5719 22 14 2.8577 -5.0748 8.2769 23 1 2.8952 -6.4282 8.8867 24 1 2.3545 -4.0962 9.2741 25 1 1.9554 -5.0881 7.0975 26 6 6.5184 -4.5003 2.2828 27 6 6.2002 -3.6580 1.2358 28 1 -0.3634 0.5889 -0.8421 29 1 -0.3633 -1.0238 -0.0890 30 1 -0.3634 0.4348 0.9312 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.5987 -1.7166 -1.2997 36 1 1.7590 -0.1537 -2.1365 37 1 3.8881 -0.7384 -3.3094 38 1 5.1607 -1.6011 -2.4126 39 1 3.7111 -3.1063 -3.5695 40 1 3.3058 -1.6033 0.7129 41 1 5.9931 -1.6888 -0.4951 42 1 5.4453 -0.4517 0.6615 43 1 5.0611 -1.0078 2.9878 44 1 5.6139 -2.5048 4.8614 45 1 8.2734 -6.2020 4.3488 46 1 6.8893 -6.9510 5.1806 47 1 6.8099 -6.6320 3.4312 48 1 7.1383 -4.9747 6.6878 49 1 6.5118 -3.4179 6.0946 50 1 5.0637 -3.7330 9.4658 51 1 6.9303 -5.4786 2.0837 52 1 6.3639 -3.9778 0.2173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067224239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:39 Heat of formation + Delta-G solvation = -33.428564 kcal Electronic energy + Delta-G solvation = -27212.197912 eV Core-core repulsion = 23596.924325 eV Total energy + Delta-G solvation = -3615.273586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.19817 -38.49778 -36.20227 -35.98938 -34.28904 -32.68496 -30.90551 -30.39885 -28.51784 -27.75859 -27.36257 -26.33163 -25.46687 -23.86136 -22.12324 -21.44304 -21.12692 -19.71797 -19.51663 -17.54910 -16.74033 -16.49193 -16.06184 -15.45990 -15.19873 -14.91897 -14.61233 -14.31719 -14.21267 -13.82439 -13.72304 -13.60524 -13.42056 -13.00856 -12.84633 -12.74596 -12.43376 -12.27565 -12.17368 -12.04864 -11.78064 -11.63037 -11.54143 -11.37295 -11.22959 -10.93907 -10.89144 -10.74612 -10.67135 -10.56190 -10.41334 -10.24648 -10.00741 -9.85268 -9.72508 -8.80967 -8.49726 -8.26683 -8.19443 -6.43923 -6.00089 -4.16298 2.15403 2.27024 3.27125 3.33847 3.39165 4.12295 4.18987 4.29123 4.42757 4.54167 4.66644 4.73968 4.76938 5.05853 5.17458 5.22423 5.23517 5.32067 5.34291 5.41290 5.45352 5.54942 5.55551 5.63358 5.65004 5.68685 5.74238 5.79288 5.84211 5.86500 5.95426 6.04645 6.07549 6.10755 6.21108 6.26971 6.31577 6.43357 6.47072 6.68931 6.96447 7.05381 7.17573 7.24748 7.29110 7.36583 7.52957 7.62054 7.64643 7.82419 8.17037 8.29357 8.51828 8.93169 9.50553 10.96510 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.003075 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.989308 B = 9104.081223 C =10624.303722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.149 4.149 4 C -0.108 4.108 5 C 0.085 3.915 6 H 0.053 0.947 7 C 0.088 3.912 8 O -0.554 6.554 9 N -0.671 5.671 10 C 0.115 3.885 11 C -0.171 4.171 12 C -0.068 4.068 13 C -0.188 4.188 14 C 0.242 3.758 15 N -0.616 5.616 16 C 0.098 3.902 17 C 0.249 3.751 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.223 4.223 27 C -0.049 4.049 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.369 0.631 40 H 0.344 0.656 41 H 0.067 0.933 42 H 0.026 0.974 43 H 0.106 0.894 44 H 0.131 0.869 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.030 0.970 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.113 0.887 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 7.635 -21.047 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.207 4.207 4 C -0.146 4.146 5 C -0.025 4.025 6 H 0.071 0.929 7 C 0.009 3.991 8 O -0.357 6.357 9 N -0.305 5.305 10 C -0.013 4.013 11 C -0.174 4.174 12 C -0.087 4.087 13 C -0.210 4.210 14 C 0.135 3.865 15 N -0.322 5.322 16 C -0.046 4.046 17 C 0.129 3.871 18 C -0.570 4.570 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.246 4.246 27 C -0.069 4.069 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.214 0.786 40 H 0.165 0.835 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.124 0.876 44 H 0.148 0.852 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.130 0.870 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.259 7.192 -20.486 21.829 hybrid contribution -0.705 0.420 0.442 0.932 sum -2.964 7.611 -20.045 21.645 Atomic orbital electron populations 1.21806 0.95050 1.01902 1.01488 1.21208 0.96086 0.96138 0.98857 1.21911 1.00907 0.96187 1.01660 1.21663 0.94120 1.01569 0.97213 1.21651 0.95882 0.93638 0.91368 0.92938 1.22182 0.95540 0.85657 0.95682 1.86619 1.66746 1.36321 1.46031 1.60549 1.03398 1.55669 1.10841 1.20698 0.89708 0.95425 0.95510 1.19156 1.08509 0.96616 0.93157 1.20644 0.97940 0.98272 0.91891 1.20833 1.06362 0.93928 0.99900 1.17947 0.91059 0.89972 0.87564 1.47090 1.65434 1.13824 1.05839 1.21470 0.96631 0.85353 1.01113 1.19275 0.96278 0.96079 0.75427 1.21598 0.99496 1.37631 0.98239 0.92228 1.24964 0.97716 0.94989 0.96412 1.69937 1.36195 1.40322 1.07017 0.86526 0.84386 0.78277 0.78491 1.20618 1.21096 1.19745 1.20570 1.11673 1.00998 0.91333 1.20470 0.96259 0.92741 0.97402 0.92952 0.92462 0.92756 0.90984 0.92708 0.92782 0.92816 0.90062 0.91892 0.94312 0.93955 0.78572 0.83511 0.91457 0.95591 0.87559 0.85170 0.94664 0.91490 0.92653 0.95245 0.94666 0.92677 0.86952 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 37.16 0.34 -0.93 16 2 C -0.10 -0.97 2.83 -90.62 -0.26 -1.23 16 3 C -0.15 -1.26 8.96 37.16 0.33 -0.92 16 4 C -0.11 -1.05 3.99 -26.74 -0.11 -1.15 16 5 C 0.08 0.86 2.32 -67.71 -0.16 0.70 16 6 H 0.05 0.50 6.06 -51.93 -0.31 0.18 16 7 C 0.09 0.82 6.77 37.16 0.25 1.07 16 8 O -0.55 -5.80 12.84 -35.23 -0.45 -6.25 16 9 N -0.67 -8.43 6.23 -107.99 -0.67 -9.10 16 10 C 0.11 1.48 5.61 -4.98 -0.03 1.45 16 11 C -0.17 -2.72 5.40 -104.58 -0.56 -3.29 16 12 C -0.07 -1.18 9.69 -39.61 -0.38 -1.57 16 13 C -0.19 -3.86 9.21 -39.38 -0.36 -4.22 16 14 C 0.24 5.00 6.55 -83.79 -0.55 4.45 16 15 N -0.62 -13.44 2.99 -180.99 -0.54 -13.98 16 16 C 0.10 1.77 10.19 59.85 0.61 2.38 16 17 C 0.25 6.32 4.91 -5.19 -0.03 6.29 16 18 C -0.53 -14.64 9.39 -34.44 -0.32 -14.97 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.90 -25.80 13.29 55.43 0.74 -25.07 16 22 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.22 -4.01 9.21 -39.38 -0.36 -4.37 16 27 C -0.05 -0.81 9.69 -39.62 -0.38 -1.19 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.77 6.29 -51.93 -0.33 0.44 16 32 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 33 H 0.05 0.46 6.47 -51.93 -0.34 0.12 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.95 7.76 -51.93 -0.40 0.55 16 36 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.04 0.39 7.07 -51.93 -0.37 0.02 16 39 H 0.37 2.26 9.12 45.56 0.42 2.68 16 40 H 0.34 4.55 6.48 -39.29 -0.25 4.29 16 41 H 0.07 0.82 7.02 -51.93 -0.36 0.45 16 42 H 0.03 0.31 8.00 -51.93 -0.42 -0.10 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.13 2.94 6.14 -52.49 -0.32 2.62 16 45 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 46 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 47 H 0.05 0.89 6.20 -51.93 -0.32 0.57 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 50 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 51 H 0.11 1.84 6.14 -52.49 -0.32 1.52 16 52 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 408.05 15.07 6.15 6.15 Total: -1.00 -30.37 408.05 -10.13 -40.51 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.27 Total: 7.18 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.06 Total: -15.90 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.48 Total: -48.15 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.45 Total: -6.25 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.37 -10.13 -40.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067224239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.078 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds