Wall clock time and date at job start Tue Mar 31 2020 13:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32993 * 120.00224 * 2 1 4 4 C 1.50709 * 119.99793 * 359.97438 * 3 2 1 5 5 C 1.47103 * 120.00273 * 179.97438 * 3 2 1 6 6 O 1.21615 * 120.00143 * 261.78506 * 5 3 2 7 7 N 1.34778 * 119.99809 * 81.78212 * 5 3 2 8 8 C 1.46923 * 120.63055 * 175.33255 * 7 5 3 9 9 C 1.53186 * 108.77730 * 233.63026 * 8 7 5 10 10 C 1.53038 * 109.31645 * 305.36720 * 9 8 7 11 11 C 1.53000 * 109.46344 * 181.38418 * 10 9 8 12 12 H 1.08998 * 109.49790 * 300.03700 * 11 10 9 13 13 C 1.53044 * 109.52223 * 60.11617 * 11 10 9 14 14 C 1.53038 * 109.53774 * 181.32962 * 13 11 10 15 15 C 1.53187 * 109.31572 * 298.64072 * 14 13 11 16 16 N 1.47212 * 108.85917 * 54.64537 * 15 14 13 17 17 C 1.36936 * 120.81161 * 126.33372 * 16 15 14 18 18 H 1.08004 * 120.00160 * 211.49433 * 17 16 15 19 19 C 1.38813 * 119.99851 * 31.50293 * 17 16 15 20 20 N 1.31615 * 120.00248 * 10.71832 * 19 17 16 21 21 Si 1.86801 * 119.99609 * 190.72012 * 19 17 16 22 22 H 1.48503 * 109.47310 * 59.99747 * 21 19 17 23 23 H 1.48501 * 109.46798 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47254 * 299.99582 * 21 19 17 25 25 C 1.46927 * 118.55427 * 306.48415 * 16 15 14 26 26 C 1.53041 * 109.52755 * 61.36807 * 10 9 8 27 27 C 1.46928 * 120.63261 * 355.35698 * 7 5 3 28 28 H 1.08999 * 109.47094 * 299.99905 * 1 2 3 29 29 H 1.09004 * 109.46913 * 59.99907 * 1 2 3 30 30 H 1.09000 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00223 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46855 * 274.56207 * 4 3 2 33 33 H 1.08992 * 109.46744 * 34.56168 * 4 3 2 34 34 H 1.09001 * 109.46305 * 154.55663 * 4 3 2 35 35 H 1.08999 * 109.58575 * 113.84405 * 8 7 5 36 36 H 1.08998 * 109.58775 * 353.42221 * 8 7 5 37 37 H 1.09006 * 109.50094 * 185.41575 * 9 8 7 38 38 H 1.09000 * 109.49883 * 65.31675 * 9 8 7 39 39 H 1.09001 * 109.45833 * 301.35862 * 10 9 8 40 40 H 1.08990 * 109.46001 * 301.35352 * 13 11 10 41 41 H 1.09001 * 109.45737 * 61.33058 * 13 11 10 42 42 H 1.09005 * 109.49744 * 58.58836 * 14 13 11 43 43 H 1.08992 * 109.50121 * 178.68304 * 14 13 11 44 44 H 1.09003 * 109.59289 * 174.41881 * 15 14 13 45 45 H 1.08998 * 109.58598 * 294.70364 * 15 14 13 46 46 H 0.97001 * 119.99841 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.58391 * 293.67614 * 25 16 15 48 48 H 1.08996 * 109.58469 * 173.39539 * 25 16 15 49 49 H 1.09001 * 109.49601 * 58.58390 * 26 10 9 50 50 H 1.09003 * 109.50082 * 178.68027 * 26 10 9 51 51 H 1.08993 * 109.59033 * 246.15859 * 27 7 5 52 52 H 1.09005 * 109.58418 * 6.58141 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4184 2.4569 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2507 1.3025 1.0432 7 7 4.3173 0.9846 -1.1544 8 6 5.7828 1.0838 -1.1867 9 6 6.1845 2.1040 -2.2565 10 6 5.5516 1.7114 -3.5934 11 6 5.9786 2.7089 -4.6721 12 1 5.6486 3.7096 -4.3934 13 6 7.5029 2.6932 -4.8085 14 6 7.9328 3.7146 -5.8640 15 6 7.3223 3.3334 -7.2163 16 7 5.8642 3.2040 -7.0606 17 6 5.0077 3.8977 -7.8733 18 1 4.0485 4.2208 -7.4966 19 6 5.3724 4.1854 -9.1814 20 7 6.4371 3.6183 -9.7077 21 14 4.3518 5.3774 -10.1947 22 1 4.3327 6.7040 -9.5275 23 1 4.9480 5.5131 -11.5480 24 1 2.9637 4.8633 -10.3141 25 6 5.3460 2.3161 -6.0109 26 6 4.0269 1.7251 -3.4612 27 6 3.6008 0.7003 -2.4052 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.0470 -0.9353 0.0004 32 1 1.1664 2.7304 -1.0251 33 1 0.5037 2.3485 0.5820 34 1 2.0404 3.2356 0.4410 35 1 6.2096 0.1111 -1.4309 36 1 6.1484 1.4116 -0.2136 37 1 7.2698 2.1169 -2.3577 38 1 5.8341 3.0941 -1.9649 39 1 5.8828 0.7111 -3.8721 40 1 7.9558 2.9483 -3.8506 41 1 7.8301 1.6986 -5.1116 42 1 7.5844 4.7059 -5.5741 43 1 9.0198 3.7195 -5.9440 44 1 7.5431 4.1097 -7.9489 45 1 7.7411 2.3846 -7.5518 46 1 6.6917 3.8191 -10.6219 47 1 5.6018 1.2832 -6.2469 48 1 4.2627 2.4189 -5.9473 49 1 3.6970 2.7188 -3.1581 50 1 3.5762 1.4683 -4.4198 51 1 3.8495 -0.3037 -2.7488 52 1 2.5265 0.7752 -2.2361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961346292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:08 Heat of formation + Delta-G solvation = -22.270601 kcal Electronic energy + Delta-G solvation = -28221.712945 eV Core-core repulsion = 24606.923204 eV Total energy + Delta-G solvation = -3614.789741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.48595 -38.60905 -36.69541 -35.92047 -33.97667 -32.24614 -31.40329 -30.29563 -29.68435 -29.07256 -26.63842 -25.31914 -24.85193 -23.46676 -22.25040 -21.57347 -20.76783 -19.73824 -19.02772 -18.36439 -17.08284 -16.62184 -16.25525 -15.51639 -14.91459 -14.54498 -14.40618 -14.28467 -14.09297 -13.83474 -13.76717 -13.57097 -13.19677 -13.03132 -12.85677 -12.78024 -12.65537 -12.47752 -12.39943 -12.29298 -12.02481 -11.76853 -11.64384 -11.27792 -11.19584 -10.91614 -10.81662 -10.67627 -10.39469 -10.25038 -10.12759 -10.07489 -9.95261 -9.83624 -9.42051 -9.27052 -9.17233 -8.72887 -8.45878 -6.57749 -5.76457 -3.24180 1.51479 2.43384 2.93979 3.37593 3.43164 3.43919 4.25774 4.48484 4.63794 4.73200 4.85273 4.86169 4.94092 5.04402 5.06219 5.21565 5.23002 5.31585 5.38280 5.40418 5.45540 5.47611 5.55126 5.57414 5.62743 5.67173 5.69546 5.76082 5.79006 5.86629 5.96786 6.01541 6.10923 6.13514 6.24193 6.27203 6.30934 6.42400 6.46381 6.50584 6.52577 6.68637 6.74956 6.89086 6.95259 7.07398 7.25627 7.45081 7.72773 7.79840 8.00139 8.49844 9.24327 9.86647 10.45841 11.31507 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.003001 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.301974 B = 9328.149335 C =10495.785699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C -0.160 4.160 4 C -0.107 4.107 5 C 0.557 3.443 6 O -0.545 6.545 7 N -0.603 5.603 8 C 0.111 3.889 9 C -0.129 4.129 10 C -0.079 4.079 11 C -0.097 4.097 12 H 0.064 0.936 13 C -0.103 4.103 14 C -0.143 4.143 15 C 0.170 3.830 16 N -0.592 5.592 17 C -0.252 4.252 18 H 0.062 0.938 19 C 0.004 3.996 20 N -0.905 5.905 21 Si 0.903 3.097 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.154 3.846 26 C -0.131 4.131 27 C 0.107 3.893 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.016 0.984 46 H 0.254 0.746 47 H 0.014 0.986 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.069 0.931 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 -6.852 17.234 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C -0.163 4.163 4 C -0.164 4.164 5 C 0.345 3.655 6 O -0.423 6.423 7 N -0.335 5.335 8 C -0.011 4.011 9 C -0.167 4.167 10 C -0.098 4.098 11 C -0.117 4.117 12 H 0.083 0.917 13 C -0.141 4.141 14 C -0.183 4.183 15 C 0.045 3.955 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.080 0.920 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.027 3.973 26 C -0.169 4.169 27 C -0.016 4.016 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.032 0.968 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.102 0.898 51 H 0.087 0.913 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.727 -6.748 17.575 19.992 hybrid contribution -0.350 0.549 -0.702 0.957 sum -7.077 -6.200 16.873 19.318 Atomic orbital electron populations 1.20880 0.91993 1.02765 1.02459 1.23225 0.96613 0.96650 0.97753 1.21400 0.92679 0.97274 1.04969 1.20712 0.99567 0.93430 1.02648 1.18601 0.87813 0.75758 0.83302 1.90790 1.69962 1.50158 1.31370 1.48184 1.07466 1.69792 1.08083 1.21669 0.79074 0.99608 1.00785 1.22030 1.01313 0.98831 0.94516 1.21144 0.94217 1.00036 0.94389 1.21678 0.95942 0.98235 0.95869 0.91736 1.21476 0.95358 0.99360 0.97900 1.22190 0.98624 0.98455 0.98993 1.20814 0.82815 0.99650 0.92230 1.44042 1.01608 1.49465 1.36355 1.19112 0.99696 1.28279 0.91094 0.92027 1.25151 0.98190 0.99814 0.96292 1.69970 1.26857 1.43951 1.14171 0.86366 0.79781 0.81175 0.79369 1.21027 1.21624 1.20873 1.20943 0.96352 0.92719 0.87249 1.22028 0.96805 0.99278 0.98784 1.21848 0.96982 0.99129 0.83602 0.91050 0.90888 0.91666 0.86914 0.90582 0.90814 0.91567 0.91542 0.89342 0.90273 0.91700 0.91271 0.93632 0.92986 0.93002 0.93570 0.89710 0.96603 0.93605 0.96794 0.93002 0.91506 0.89787 0.91255 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 8.97 36.00 0.32 -0.41 16 2 C -0.12 -1.02 9.36 -36.13 -0.34 -1.36 16 3 C -0.16 -1.62 4.00 -102.84 -0.41 -2.03 16 4 C -0.11 -0.90 9.47 36.01 0.34 -0.56 16 5 C 0.56 7.25 7.05 -12.66 -0.09 7.16 16 6 O -0.54 -9.09 16.54 5.26 0.09 -9.00 16 7 N -0.60 -6.97 2.97 -174.17 -0.52 -7.49 16 8 C 0.11 1.27 6.42 -3.72 -0.02 1.24 16 9 C -0.13 -1.51 5.05 -26.62 -0.13 -1.64 16 10 C -0.08 -1.00 1.74 -90.58 -0.16 -1.15 16 11 C -0.10 -1.58 1.92 -90.50 -0.17 -1.75 16 12 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 13 C -0.10 -1.69 4.86 -26.69 -0.13 -1.82 16 14 C -0.14 -2.75 6.08 -26.61 -0.16 -2.91 16 15 C 0.17 4.08 5.27 -3.56 -0.02 4.06 16 16 N -0.59 -14.67 3.00 -172.09 -0.52 -15.18 16 17 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 18 H 0.06 1.64 7.85 -52.48 -0.41 1.23 16 19 C 0.00 0.11 5.05 -17.43 -0.09 0.03 16 20 N -0.91 -26.20 11.07 55.49 0.61 -25.58 16 21 Si 0.90 21.54 29.57 -169.99 -5.03 16.52 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.15 3.08 5.27 -3.71 -0.02 3.06 16 26 C -0.13 -1.50 5.05 -26.61 -0.13 -1.64 16 27 C 0.11 1.06 6.29 -3.71 -0.02 1.03 16 28 H 0.07 0.39 7.41 -51.93 -0.38 0.01 16 29 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.92 8.05 -52.49 -0.42 0.50 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.50 6.67 -51.93 -0.35 0.15 16 34 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.10 7.03 -51.93 -0.37 0.74 16 37 H 0.08 0.89 6.34 -51.93 -0.33 0.56 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.65 6.34 -51.93 -0.33 0.32 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 2.28 6.13 -51.93 -0.32 1.96 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.05 1.01 6.51 -51.93 -0.34 0.67 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.08 1.00 6.49 -51.93 -0.34 0.66 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -31.49 390.99 -10.21 -41.70 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -9.36 Total: -1.17 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.38 Total: -5.69 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.42 Total: -48.26 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.49 -10.21 -41.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961346292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.431 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds