Wall clock time and date at job start Tue Mar 31 2020 13:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32993 * 120.00224 * 2 1 4 4 C 1.50709 * 119.99793 * 359.97438 * 3 2 1 5 5 C 1.47103 * 120.00273 * 179.97438 * 3 2 1 6 6 O 1.21615 * 120.00143 * 261.78506 * 5 3 2 7 7 N 1.34778 * 119.99809 * 81.78212 * 5 3 2 8 8 C 1.46923 * 120.63055 * 175.33255 * 7 5 3 9 9 C 1.53186 * 108.77730 * 233.63026 * 8 7 5 10 10 C 1.53038 * 109.31645 * 305.36720 * 9 8 7 11 11 C 1.53000 * 109.46344 * 181.38418 * 10 9 8 12 12 H 1.08998 * 109.49790 * 300.03700 * 11 10 9 13 13 C 1.53044 * 109.52223 * 60.11617 * 11 10 9 14 14 C 1.53038 * 109.53774 * 181.32962 * 13 11 10 15 15 C 1.53187 * 109.31572 * 298.64072 * 14 13 11 16 16 N 1.47212 * 108.85917 * 54.64537 * 15 14 13 17 17 C 1.36936 * 120.81161 * 126.33372 * 16 15 14 18 18 H 1.08004 * 120.00160 * 211.49433 * 17 16 15 19 19 C 1.38813 * 119.99851 * 31.50293 * 17 16 15 20 20 N 1.31615 * 120.00248 * 10.71832 * 19 17 16 21 21 Si 1.86801 * 119.99609 * 190.72012 * 19 17 16 22 22 H 1.48503 * 109.47310 * 59.99747 * 21 19 17 23 23 H 1.48501 * 109.46798 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47254 * 299.99582 * 21 19 17 25 25 C 1.46927 * 118.55427 * 306.48415 * 16 15 14 26 26 C 1.53041 * 109.52755 * 61.36807 * 10 9 8 27 27 C 1.46928 * 120.63261 * 355.35698 * 7 5 3 28 28 H 1.08999 * 109.47094 * 299.99905 * 1 2 3 29 29 H 1.09004 * 109.46913 * 59.99907 * 1 2 3 30 30 H 1.09000 * 109.47378 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.00223 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46855 * 274.56207 * 4 3 2 33 33 H 1.08992 * 109.46744 * 34.56168 * 4 3 2 34 34 H 1.09001 * 109.46305 * 154.55663 * 4 3 2 35 35 H 1.08999 * 109.58575 * 113.84405 * 8 7 5 36 36 H 1.08998 * 109.58775 * 353.42221 * 8 7 5 37 37 H 1.09006 * 109.50094 * 185.41575 * 9 8 7 38 38 H 1.09000 * 109.49883 * 65.31675 * 9 8 7 39 39 H 1.09001 * 109.45833 * 301.35862 * 10 9 8 40 40 H 1.08990 * 109.46001 * 301.35352 * 13 11 10 41 41 H 1.09001 * 109.45737 * 61.33058 * 13 11 10 42 42 H 1.09005 * 109.49744 * 58.58836 * 14 13 11 43 43 H 1.08992 * 109.50121 * 178.68304 * 14 13 11 44 44 H 1.09003 * 109.59289 * 174.41881 * 15 14 13 45 45 H 1.08998 * 109.58598 * 294.70364 * 15 14 13 46 46 H 0.97001 * 119.99841 * 179.97438 * 20 19 17 47 47 H 1.08994 * 109.58391 * 293.67614 * 25 16 15 48 48 H 1.08996 * 109.58469 * 173.39539 * 25 16 15 49 49 H 1.09001 * 109.49601 * 58.58390 * 26 10 9 50 50 H 1.09003 * 109.50082 * 178.68027 * 26 10 9 51 51 H 1.08993 * 109.59033 * 246.15859 * 27 7 5 52 52 H 1.09005 * 109.58418 * 6.58141 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4184 2.4569 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2507 1.3025 1.0432 7 7 4.3173 0.9846 -1.1544 8 6 5.7828 1.0838 -1.1867 9 6 6.1845 2.1040 -2.2565 10 6 5.5516 1.7114 -3.5934 11 6 5.9786 2.7089 -4.6721 12 1 5.6486 3.7096 -4.3934 13 6 7.5029 2.6932 -4.8085 14 6 7.9328 3.7146 -5.8640 15 6 7.3223 3.3334 -7.2163 16 7 5.8642 3.2040 -7.0606 17 6 5.0077 3.8977 -7.8733 18 1 4.0485 4.2208 -7.4966 19 6 5.3724 4.1854 -9.1814 20 7 6.4371 3.6183 -9.7077 21 14 4.3518 5.3774 -10.1947 22 1 4.3327 6.7040 -9.5275 23 1 4.9480 5.5131 -11.5480 24 1 2.9637 4.8633 -10.3141 25 6 5.3460 2.3161 -6.0109 26 6 4.0269 1.7251 -3.4612 27 6 3.6008 0.7003 -2.4052 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 2.0470 -0.9353 0.0004 32 1 1.1664 2.7304 -1.0251 33 1 0.5037 2.3485 0.5820 34 1 2.0404 3.2356 0.4410 35 1 6.2096 0.1111 -1.4309 36 1 6.1484 1.4116 -0.2136 37 1 7.2698 2.1169 -2.3577 38 1 5.8341 3.0941 -1.9649 39 1 5.8828 0.7111 -3.8721 40 1 7.9558 2.9483 -3.8506 41 1 7.8301 1.6986 -5.1116 42 1 7.5844 4.7059 -5.5741 43 1 9.0198 3.7195 -5.9440 44 1 7.5431 4.1097 -7.9489 45 1 7.7411 2.3846 -7.5518 46 1 6.6917 3.8191 -10.6219 47 1 5.6018 1.2832 -6.2469 48 1 4.2627 2.4189 -5.9473 49 1 3.6970 2.7188 -3.1581 50 1 3.5762 1.4683 -4.4198 51 1 3.8495 -0.3037 -2.7488 52 1 2.5265 0.7752 -2.2361 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961346292.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:07 Heat of formation + Delta-G solvation = -38.634379 kcal Electronic energy + Delta-G solvation = -28222.422532 eV Core-core repulsion = 24606.923204 eV Total energy + Delta-G solvation = -3615.499327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44843 -39.89199 -38.03071 -36.66209 -35.48602 -33.79265 -32.56587 -31.88556 -30.67438 -30.07334 -27.47770 -27.12907 -25.90164 -24.65814 -23.43406 -23.09150 -21.97836 -20.70912 -20.56885 -19.24667 -18.60977 -17.85454 -17.16528 -16.85318 -16.44390 -15.86792 -15.59509 -15.37924 -15.14063 -14.95519 -14.79875 -14.73830 -14.61980 -14.14883 -14.13761 -13.88986 -13.61356 -13.46516 -13.37671 -13.32616 -13.01341 -12.93755 -12.88983 -12.72712 -12.43013 -12.22367 -12.20385 -12.16024 -12.00236 -11.78925 -11.69738 -11.48164 -11.34586 -10.99295 -10.89944 -10.70666 -10.52549 -9.86571 -9.68831 -8.57930 -7.84314 -5.35231 0.83544 1.46624 1.48084 1.48918 1.55395 2.07244 2.51519 3.30651 3.46862 3.64079 3.77816 3.86729 3.93361 4.02710 4.13823 4.22361 4.29887 4.35006 4.37712 4.44279 4.49066 4.50883 4.58511 4.62996 4.71312 4.78051 4.82580 4.85557 4.86653 4.91291 4.91489 4.98102 5.02655 5.05236 5.10468 5.13663 5.15132 5.18098 5.24320 5.33853 5.40927 5.42411 5.51499 5.57271 5.60090 5.62552 5.67923 5.70951 5.82947 6.34242 6.43533 7.05362 7.18124 7.89497 8.42940 9.21042 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.003001 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.301974 B = 9328.149335 C =10495.785699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C -0.186 4.186 4 C -0.102 4.102 5 C 0.552 3.448 6 O -0.591 6.591 7 N -0.601 5.601 8 C 0.111 3.889 9 C -0.119 4.119 10 C -0.070 4.070 11 C -0.084 4.084 12 H 0.051 0.949 13 C -0.099 4.099 14 C -0.134 4.134 15 C 0.176 3.824 16 N -0.612 5.612 17 C -0.262 4.262 18 H 0.065 0.935 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.273 1.273 25 C 0.153 3.847 26 C -0.127 4.127 27 C 0.112 3.888 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.064 0.936 44 H 0.047 0.953 45 H -0.006 1.006 46 H 0.249 0.751 47 H 0.010 0.990 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.084 0.916 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.607 -7.620 18.431 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.124 4.124 3 C -0.189 4.189 4 C -0.159 4.159 5 C 0.342 3.658 6 O -0.473 6.473 7 N -0.332 5.332 8 C -0.011 4.011 9 C -0.157 4.157 10 C -0.089 4.089 11 C -0.104 4.104 12 H 0.069 0.931 13 C -0.136 4.136 14 C -0.173 4.173 15 C 0.050 3.950 16 N -0.336 5.336 17 C -0.393 4.393 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.198 1.198 25 C 0.028 3.972 26 C -0.166 4.166 27 C -0.010 4.010 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.012 0.988 46 H 0.058 0.942 47 H 0.028 0.972 48 H 0.072 0.928 49 H 0.077 0.923 50 H 0.100 0.900 51 H 0.102 0.898 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.233 -7.529 18.778 21.842 hybrid contribution 0.109 0.729 -1.079 1.307 sum -8.124 -6.799 17.699 20.628 Atomic orbital electron populations 1.20954 0.89966 1.03899 1.03235 1.23468 0.98015 0.95900 0.94986 1.21376 0.91054 0.98629 1.07857 1.20712 0.99667 0.92120 1.03401 1.19135 0.89083 0.74741 0.82854 1.90757 1.71164 1.52385 1.32975 1.48300 1.07629 1.68944 1.08373 1.21664 0.79282 1.00225 0.99957 1.21929 1.01734 0.98295 0.93755 1.21046 0.95166 0.99150 0.93526 1.21478 0.95693 0.98476 0.94715 0.93073 1.21463 0.95411 0.98521 0.98231 1.22036 0.99424 0.98840 0.96985 1.20620 0.83071 0.97255 0.94046 1.44328 1.01727 1.50375 1.37149 1.19464 1.00023 1.28196 0.91584 0.91785 1.25906 0.99453 1.01701 0.97489 1.70143 1.28535 1.45549 1.14113 0.85351 0.78560 0.79171 0.77409 1.20502 1.22100 1.19836 1.21088 0.96771 0.91627 0.87749 1.21970 0.95853 0.99487 0.99243 1.21913 0.97745 0.99160 0.82184 0.90350 0.89794 0.90452 0.86954 0.89662 0.89059 0.93365 0.89962 0.90621 0.89302 0.92783 0.90446 0.90602 0.92670 0.93735 0.91724 0.93425 0.98812 0.94196 0.97177 0.92782 0.92298 0.90001 0.89756 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.97 71.23 0.64 -0.42 16 2 C -0.10 -1.48 9.36 24.52 0.23 -1.25 16 3 C -0.19 -3.46 4.00 -18.70 -0.07 -3.54 16 4 C -0.10 -1.56 9.47 71.24 0.67 -0.89 16 5 C 0.55 13.93 7.05 86.57 0.61 14.54 16 6 O -0.59 -19.86 16.54 -4.08 -0.07 -19.93 16 7 N -0.60 -12.95 2.97 -823.19 -2.45 -15.40 16 8 C 0.11 2.35 6.42 86.36 0.55 2.90 16 9 C -0.12 -2.53 5.05 30.67 0.15 -2.38 16 10 C -0.07 -1.62 1.74 -10.77 -0.02 -1.63 16 11 C -0.08 -2.59 1.92 -10.71 -0.02 -2.61 16 12 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 13 C -0.10 -3.04 4.86 30.62 0.15 -2.89 16 14 C -0.13 -5.04 6.08 30.67 0.19 -4.86 16 15 C 0.18 8.60 5.27 86.31 0.45 9.06 16 16 N -0.61 -30.72 3.00 -698.38 -2.09 -32.82 16 17 C -0.26 -14.43 9.58 84.03 0.81 -13.63 16 18 H 0.06 3.41 7.85 -2.91 -0.02 3.39 16 19 C -0.05 -2.82 5.05 84.86 0.43 -2.39 16 20 N -0.94 -55.85 11.07 21.65 0.24 -55.61 16 21 Si 0.97 44.80 29.57 68.60 2.03 46.82 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 25 C 0.15 6.04 5.27 86.36 0.45 6.49 16 26 C -0.13 -2.68 5.05 30.67 0.15 -2.52 16 27 C 0.11 1.93 6.29 86.36 0.54 2.48 16 28 H 0.08 0.61 7.41 -2.39 -0.02 0.60 16 29 H 0.08 0.59 8.10 -2.39 -0.02 0.57 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 1.58 8.05 -2.91 -0.02 1.56 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.03 6.67 -2.39 -0.02 1.01 16 34 H 0.05 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.84 7.03 -2.39 -0.02 1.82 16 37 H 0.09 1.73 6.34 -2.38 -0.02 1.72 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.93 6.34 -2.39 -0.02 1.91 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.05 2.66 6.13 -2.39 -0.01 2.65 16 45 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 47 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.05 2.08 6.51 -2.39 -0.02 2.06 16 49 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.08 1.78 6.49 -2.39 -0.02 1.77 16 51 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.10 1.46 5.93 -2.38 -0.01 1.45 16 Total: -1.00 -70.31 390.99 4.46 -65.85 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.87 Total: 14.63 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 5.93 Total: -3.54 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -4.30 Total: -103.83 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.07 Total: -19.93 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.31 4.46 -65.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961346292.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.214 kcal (2) G-P(sol) polarization free energy of solvation -70.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds