Wall clock time and date at job start Tue Mar 31 2020 12:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 C 1.53002 * 109.46935 * 240.00171 * 2 1 3 5 5 C 1.52996 * 109.47053 * 119.99961 * 2 1 3 6 6 C 1.53003 * 109.47249 * 60.00270 * 5 2 1 7 7 H 1.09000 * 115.54946 * 29.32375 * 6 5 2 8 8 C 1.52997 * 117.51596 * 243.62727 * 6 5 2 9 9 C 1.52993 * 117.49875 * 174.99959 * 6 5 2 10 10 H 1.09004 * 117.50253 * 359.97438 * 9 6 5 11 11 C 1.50705 * 117.49667 * 214.99948 * 9 6 5 12 12 O 1.21278 * 120.00022 * 359.97438 * 11 9 6 13 13 N 1.34780 * 120.00051 * 179.97438 * 11 9 6 14 14 C 1.46497 * 120.00194 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47297 * 180.02562 * 14 13 11 16 16 H 1.08998 * 115.49347 * 29.61775 * 15 14 13 17 17 C 1.57112 * 118.27353 * 243.46410 * 15 14 13 18 18 H 1.08996 * 121.24845 * 3.77223 * 17 15 14 19 19 C 1.54396 * 118.20170 * 162.01485 * 17 15 14 20 20 N 1.48144 * 104.61631 * 86.20279 * 19 17 15 21 21 C 1.36936 * 127.84246 * 140.41689 * 20 19 17 22 22 H 1.07997 * 120.00600 * 195.56579 * 21 20 19 23 23 C 1.38817 * 119.99651 * 15.56816 * 21 20 19 24 24 N 1.31614 * 120.00197 * 9.09483 * 23 21 20 25 25 Si 1.86804 * 119.99863 * 189.10459 * 23 21 20 26 26 H 1.48491 * 109.47430 * 59.99369 * 25 23 21 27 27 H 1.48498 * 109.47092 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46745 * 299.99440 * 25 23 21 29 29 C 1.48152 * 104.32545 * 320.41050 * 20 19 17 30 30 C 1.52999 * 117.44326 * 175.00217 * 15 14 13 31 31 H 1.08996 * 119.53741 * 355.87499 * 30 15 14 32 32 H 1.08994 * 109.46697 * 299.99997 * 1 2 3 33 33 H 1.09001 * 109.47346 * 59.99972 * 1 2 3 34 34 H 1.08998 * 109.46809 * 179.97438 * 1 2 3 35 35 H 1.08994 * 109.46531 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47157 * 300.00143 * 3 2 1 37 37 H 1.09001 * 109.47313 * 60.00088 * 3 2 1 38 38 H 1.08998 * 109.46951 * 300.00013 * 4 2 1 39 39 H 1.09001 * 109.47220 * 59.99780 * 4 2 1 40 40 H 1.08997 * 109.46929 * 180.02562 * 4 2 1 41 41 H 1.08994 * 109.47403 * 299.99609 * 5 2 1 42 42 H 1.09007 * 109.47102 * 179.97438 * 5 2 1 43 43 H 1.08999 * 117.50199 * 145.02515 * 8 6 5 44 44 H 1.09005 * 117.49870 * 0.02562 * 8 6 5 45 45 H 0.97003 * 119.99768 * 359.97438 * 13 11 9 46 46 H 1.08997 * 109.47005 * 59.99805 * 14 13 11 47 47 H 1.09005 * 109.46950 * 300.00452 * 14 13 11 48 48 H 1.08999 * 110.40680 * 327.41220 * 19 17 15 49 49 H 1.09004 * 110.40359 * 204.98211 * 19 17 15 50 50 H 0.96999 * 120.00326 * 179.97438 * 24 23 21 51 51 H 1.08998 * 110.40318 * 280.80644 * 29 20 19 52 52 H 1.08992 * 110.40998 * 158.37112 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5301 -2.1638 1.2492 7 1 1.3625 -2.6031 0.2659 8 6 0.5860 -2.5797 2.3790 9 6 2.0285 -3.0892 2.3609 10 1 2.7201 -2.6706 3.0921 11 6 2.2502 -4.5386 2.0125 12 8 2.0337 -4.9314 0.8857 13 7 2.6892 -5.3983 2.9532 14 6 2.9052 -6.8071 2.6144 15 6 3.3995 -7.5592 3.8517 16 1 3.0552 -7.1661 4.8082 17 6 4.8363 -8.1934 3.8124 18 1 5.4933 -8.0525 2.9543 19 6 5.5033 -8.5727 5.1523 20 7 5.0098 -9.9391 5.4420 21 6 5.7102 -10.9911 5.9691 22 1 5.3134 -11.9932 5.8995 23 6 6.9302 -10.7695 6.5932 24 7 7.3302 -9.5398 6.8384 25 14 8.0042 -12.2167 7.0849 26 1 8.3571 -13.0043 5.8766 27 1 9.2446 -11.7159 7.7298 28 1 7.2643 -13.0801 8.0400 29 6 3.5864 -9.9093 5.0321 30 6 3.5725 -9.0747 3.7332 31 1 3.2800 -9.5786 2.8120 32 1 -0.3632 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.6767 -1.7489 -1.2493 39 1 1.6767 -0.2074 -2.1393 40 1 3.1300 -0.7216 -1.2491 41 1 1.6768 -0.2074 2.1392 42 1 3.1301 -0.7216 1.2490 43 1 -0.2027 -3.2928 2.1391 44 1 0.3277 -1.8255 3.1224 45 1 2.8627 -5.0840 3.8543 46 1 3.6506 -6.8801 1.8225 47 1 1.9680 -7.2465 2.2728 48 1 5.1962 -7.8829 5.9384 49 1 6.5885 -8.5744 5.0495 50 1 8.1825 -9.3850 7.2748 51 1 2.9800 -9.4283 5.7995 52 1 3.2253 -10.9194 4.8387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978171984.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:26 Heat of formation + Delta-G solvation = 22.547316 kcal Electronic energy + Delta-G solvation = -26321.024948 eV Core-core repulsion = 22708.178658 eV Total energy + Delta-G solvation = -3612.846290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.22654 -38.82594 -38.27137 -35.89063 -34.87101 -33.26434 -30.83153 -28.37678 -27.61816 -27.56911 -27.36071 -27.08397 -25.17032 -23.45789 -21.46926 -21.11664 -20.47391 -19.60111 -19.18574 -19.01472 -17.36509 -16.82398 -16.13030 -15.39974 -15.18897 -14.93357 -14.83823 -14.73272 -14.36408 -14.00687 -13.75883 -13.49261 -13.25515 -13.05897 -12.81758 -12.65557 -12.55701 -12.50090 -12.05045 -12.02378 -11.83335 -11.79181 -11.29069 -11.26203 -11.09605 -11.07433 -10.82898 -10.75574 -10.71215 -10.43622 -10.28242 -10.23330 -10.17474 -9.90392 -9.74695 -9.37139 -9.13584 -8.90355 -8.62029 -6.88151 -5.81220 -3.15450 2.43839 3.06347 3.37749 3.42403 3.43587 3.60997 4.05618 4.26615 4.39449 4.44410 4.48874 4.65152 4.66931 4.75333 4.88850 4.98178 5.09066 5.24548 5.27061 5.30294 5.32356 5.36549 5.41232 5.45117 5.47439 5.49408 5.53244 5.55090 5.61539 5.69027 5.72766 5.78175 5.78758 5.86940 5.93525 5.94624 5.95751 5.99924 6.06569 6.19124 6.25270 6.38901 6.55607 6.65549 6.70403 6.91429 7.34796 7.50463 7.51561 7.70113 8.19610 8.20551 9.09703 9.72449 10.49659 11.33062 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.031059 B = 0.001794 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.297199 B =15601.965962 C =15971.714244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.142 4.142 4 C -0.146 4.146 5 C -0.080 4.080 6 C -0.116 4.116 7 H 0.122 0.878 8 C -0.149 4.149 9 C -0.192 4.192 10 H 0.123 0.877 11 C 0.541 3.459 12 O -0.547 6.547 13 N -0.720 5.720 14 C 0.156 3.844 15 C -0.153 4.153 16 H 0.103 0.897 17 C -0.168 4.168 18 H 0.104 0.896 19 C 0.183 3.817 20 N -0.595 5.595 21 C -0.228 4.228 22 H 0.076 0.924 23 C -0.006 4.006 24 N -0.916 5.916 25 Si 0.913 3.087 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.283 1.283 29 C 0.153 3.847 30 C -0.162 4.162 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.403 0.597 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.022 0.978 49 H 0.089 0.911 50 H 0.255 0.745 51 H 0.024 0.976 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.172 20.730 -11.279 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.203 4.203 5 C -0.117 4.117 6 C -0.134 4.134 7 H 0.139 0.861 8 C -0.186 4.186 9 C -0.213 4.213 10 H 0.141 0.859 11 C 0.327 3.673 12 O -0.425 6.425 13 N -0.370 5.370 14 C 0.033 3.967 15 C -0.172 4.172 16 H 0.121 0.879 17 C -0.188 4.188 18 H 0.122 0.878 19 C 0.057 3.943 20 N -0.318 5.318 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.562 5.562 25 Si 0.743 3.257 26 H -0.211 1.211 27 H -0.215 1.215 28 H -0.210 1.210 29 C 0.026 3.974 30 C -0.182 4.182 31 H 0.120 0.880 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.238 0.762 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.040 0.960 49 H 0.108 0.892 50 H 0.065 0.935 51 H 0.042 0.958 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.070 20.317 -11.922 26.939 hybrid contribution 0.753 -0.667 0.798 1.284 sum -12.317 19.650 -11.124 25.721 Atomic orbital electron populations 1.21883 0.94459 1.02134 1.01345 1.20511 0.95842 0.95132 0.95213 1.21876 1.01008 0.95375 1.01658 1.21961 1.01086 1.00676 0.96592 1.21292 1.00566 0.92234 0.97654 1.22514 1.01194 0.94524 0.95176 0.86059 1.23093 0.91063 1.02912 1.01568 1.22320 1.00545 0.92910 1.05501 0.85925 1.19655 0.76388 0.86574 0.84673 1.90683 1.51768 1.78958 1.21056 1.45968 1.67534 1.09589 1.13929 1.20809 1.00555 0.79260 0.96083 1.23123 1.00812 0.95412 0.97821 0.87886 1.25018 0.88422 1.02660 1.02699 0.87838 1.21077 0.99501 0.85326 0.88347 1.45206 1.04122 1.09501 1.72979 1.18960 1.01017 0.86212 1.29420 0.90619 1.24897 0.99295 0.96701 0.99388 1.69882 1.21978 1.18175 1.46206 0.86185 0.79843 0.81400 0.78247 1.21063 1.21534 1.20977 1.21173 0.88190 0.96607 0.91411 1.23834 1.03440 0.90021 1.00914 0.87986 0.92820 0.93007 0.92164 0.92657 0.92682 0.92730 0.91967 0.92878 0.92646 0.91551 0.91287 0.88415 0.87904 0.76227 0.91435 0.91351 0.95991 0.89231 0.93511 0.95805 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.23 37.16 0.31 -0.58 16 2 C -0.07 -0.44 0.80 -154.50 -0.12 -0.56 16 3 C -0.14 -0.82 8.47 37.16 0.31 -0.51 16 4 C -0.15 -1.06 8.23 37.16 0.31 -0.76 16 5 C -0.08 -0.55 4.55 -26.73 -0.12 -0.67 16 6 C -0.12 -0.99 3.77 -90.62 -0.34 -1.33 16 7 H 0.12 1.26 5.58 -51.93 -0.29 0.97 16 8 C -0.15 -1.16 9.88 -26.74 -0.26 -1.42 16 9 C -0.19 -1.77 5.91 -91.78 -0.54 -2.31 16 10 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 11 C 0.54 6.90 7.61 -10.98 -0.08 6.82 16 12 O -0.55 -8.99 16.26 5.56 0.09 -8.89 16 13 N -0.72 -8.60 5.56 -60.29 -0.33 -8.94 16 14 C 0.16 2.14 5.98 -4.04 -0.02 2.11 16 15 C -0.15 -2.32 5.54 -88.39 -0.49 -2.81 16 16 H 0.10 1.55 8.04 -51.93 -0.42 1.13 16 17 C -0.17 -3.16 7.00 -86.99 -0.61 -3.77 16 18 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 19 C 0.18 4.36 5.73 -2.41 -0.01 4.34 16 20 N -0.59 -15.22 3.38 -168.85 -0.57 -15.80 16 21 C -0.23 -6.35 10.35 -15.06 -0.16 -6.51 16 22 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 23 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 24 N -0.92 -26.71 10.86 55.49 0.60 -26.10 16 25 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C 0.15 3.19 7.03 -2.40 -0.02 3.17 16 30 C -0.16 -2.86 6.71 -89.22 -0.60 -3.45 16 31 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.41 7.20 -51.93 -0.37 0.04 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.51 6.14 -51.93 -0.32 0.20 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.40 7.88 -51.93 -0.41 -0.01 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 0.62 8.03 -51.93 -0.42 0.20 16 45 H 0.40 3.98 8.40 -40.82 -0.34 3.63 16 46 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 47 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.09 2.39 6.51 -51.93 -0.34 2.06 16 50 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 410.36 15.07 6.18 6.18 Total: -1.00 -31.51 410.36 -11.24 -42.75 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -9.63 Total: 2.44 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.55 Total: -8.50 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.30 Total: -50.83 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.51 -11.24 -42.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978171984.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.292 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds