Wall clock time and date at job start Tue Mar 31 2020 12:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46710 * 2 1 4 4 C 1.52996 * 109.47386 * 119.99670 * 2 1 3 5 5 C 1.52999 * 109.47507 * 175.00585 * 4 2 1 6 6 H 1.09005 * 115.54892 * 29.32247 * 5 4 2 7 7 C 1.52999 * 117.51547 * 243.63273 * 5 4 2 8 8 C 1.52996 * 117.50310 * 174.99990 * 5 4 2 9 9 H 1.09002 * 117.49750 * 0.02562 * 8 5 4 10 10 C 1.50698 * 117.49917 * 215.02470 * 8 5 4 11 11 O 1.21281 * 120.00333 * 0.08599 * 10 8 5 12 12 N 1.34778 * 120.00189 * 180.08731 * 10 8 5 13 13 C 1.46497 * 120.00385 * 179.97438 * 12 10 8 14 14 H 1.08996 * 115.55123 * 350.58277 * 13 12 10 15 15 C 1.53031 * 117.50360 * 136.26565 * 13 12 10 16 16 C 1.52813 * 117.50484 * 204.89738 * 13 12 10 17 17 C 1.53177 * 117.71749 * 144.89833 * 16 13 12 18 18 C 1.53344 * 108.77471 * 158.88772 * 17 16 13 19 19 N 1.46843 * 108.81613 * 51.30934 * 18 17 16 20 20 C 1.36938 * 120.38877 * 123.07748 * 19 18 17 21 21 H 1.08005 * 119.99546 * 330.70161 * 20 19 18 22 22 C 1.38804 * 120.00336 * 150.69988 * 20 19 18 23 23 N 1.31623 * 120.00061 * 342.83969 * 22 20 19 24 24 Si 1.86796 * 120.00075 * 162.84681 * 22 20 19 25 25 H 1.48506 * 109.47431 * 90.00008 * 24 22 20 26 26 H 1.48506 * 109.47158 * 209.99526 * 24 22 20 27 27 H 1.48497 * 109.47119 * 329.99586 * 24 22 20 28 28 C 1.46848 * 119.23166 * 303.10398 * 19 18 17 29 29 C 1.53190 * 117.71428 * 0.13916 * 16 13 12 30 30 H 1.08994 * 109.47432 * 299.99536 * 1 2 3 31 31 H 1.08996 * 109.47431 * 60.00487 * 1 2 3 32 32 H 1.09005 * 109.46469 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47501 * 239.99874 * 2 1 3 34 34 H 1.08997 * 109.47599 * 59.99638 * 3 2 1 35 35 H 1.09002 * 109.46741 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46875 * 299.99516 * 3 2 1 37 37 H 1.08996 * 109.47180 * 55.00038 * 4 2 1 38 38 H 1.09006 * 109.47424 * 295.00246 * 4 2 1 39 39 H 1.09001 * 117.49817 * 145.02821 * 7 5 4 40 40 H 1.08998 * 117.50223 * 359.97438 * 7 5 4 41 41 H 0.97009 * 119.99732 * 0.02562 * 12 10 8 42 42 H 1.08997 * 117.50832 * 214.96043 * 15 13 12 43 43 H 1.09004 * 117.49981 * 0.02562 * 15 13 12 44 44 H 1.09001 * 109.59113 * 278.67949 * 17 16 13 45 45 H 1.09007 * 109.58540 * 39.10198 * 17 16 13 46 46 H 1.09000 * 109.58308 * 291.50979 * 18 17 16 47 47 H 1.08999 * 109.69469 * 171.16987 * 18 17 16 48 48 H 0.96998 * 120.00508 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.57975 * 297.10036 * 28 19 18 50 50 H 1.09000 * 109.69175 * 176.77005 * 28 19 18 51 51 H 1.09001 * 109.58804 * 320.90319 * 29 16 13 52 52 H 1.08997 * 109.58514 * 81.18516 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5649 -0.8308 1.1881 6 1 4.0719 -0.0351 0.6423 7 6 4.1702 -2.2341 1.1153 8 6 4.2803 -1.4193 2.4057 9 1 3.6646 -1.7288 3.2502 10 6 5.6318 -0.8540 2.7591 11 8 6.1116 0.0351 2.0882 12 7 6.3074 -1.3365 3.8209 13 6 7.6214 -0.7874 4.1642 14 1 8.0545 -0.1096 3.4285 15 6 7.9042 -0.5018 5.6408 16 6 8.5792 -1.6854 4.9462 17 6 10.0753 -1.5702 4.6384 18 6 10.8682 -2.1160 5.8321 19 7 10.3546 -3.4489 6.1722 20 6 11.1940 -4.5307 6.1909 21 1 12.0585 -4.5546 5.5439 22 6 10.9339 -5.5964 7.0413 23 7 10.1057 -5.4442 8.0530 24 14 11.7594 -7.2466 6.7503 25 1 13.0467 -7.2934 7.4894 26 1 10.8723 -8.3357 7.2321 27 1 12.0156 -7.4227 5.2983 28 6 8.9301 -3.6086 6.4914 29 6 8.0980 -3.0932 5.3110 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6765 1.9565 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6055 -1.7197 1.2952 38 1 1.7517 -0.1582 2.1370 39 1 5.0756 -2.3614 0.5218 40 1 3.4823 -3.0795 1.1114 41 1 5.9238 -2.0479 4.3573 42 1 8.5237 0.3635 5.8765 43 1 7.1126 -0.7229 6.3567 44 1 10.3108 -2.1513 3.7468 45 1 10.3351 -0.5243 4.4745 46 1 10.7479 -1.4494 6.6860 47 1 11.9238 -2.1873 5.5701 48 1 9.9242 -6.1888 8.6475 49 1 8.6897 -3.0344 7.3862 50 1 8.7080 -4.6619 6.6627 51 1 7.0458 -3.0580 5.5934 52 1 8.2245 -3.7559 4.4549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016839607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:14 Heat of formation + Delta-G solvation = 8.889586 kcal Electronic energy + Delta-G solvation = -27037.072434 eV Core-core repulsion = 23423.633900 eV Total energy + Delta-G solvation = -3613.438534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.22969 -38.86036 -37.55798 -35.53502 -35.12413 -33.09087 -31.45799 -30.11032 -28.35941 -27.84666 -27.44646 -24.66216 -24.32135 -22.46751 -21.94466 -21.41404 -20.59740 -20.10490 -20.01683 -18.22076 -17.44275 -16.58733 -15.99349 -15.61391 -15.08185 -14.91000 -14.70457 -14.31506 -14.11513 -14.02960 -13.61880 -13.42875 -13.21457 -13.04152 -12.85475 -12.60654 -12.51639 -12.31762 -12.26899 -11.94258 -11.71897 -11.51183 -11.38790 -11.33160 -11.12674 -10.96769 -10.88566 -10.71780 -10.51887 -10.44534 -10.29127 -10.24089 -9.99784 -9.81994 -9.70222 -9.58073 -9.33487 -8.47287 -8.42379 -6.63468 -5.79798 -3.23113 2.44539 3.06057 3.36173 3.43408 3.46183 3.62581 4.20096 4.29818 4.47763 4.49107 4.55334 4.69630 4.74819 4.86765 4.98476 5.01138 5.11518 5.15789 5.16156 5.31107 5.38931 5.39549 5.45641 5.46264 5.51828 5.53777 5.59303 5.63738 5.70187 5.75029 5.85329 5.89839 5.94623 6.05571 6.08060 6.10859 6.13164 6.17651 6.28638 6.45111 6.56895 6.60672 6.66584 6.71298 6.83481 7.00008 7.33238 7.56242 7.64353 7.79040 8.25814 8.46138 9.21371 9.84889 10.41828 11.28046 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.002247 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.756470 B =12460.132853 C =13142.130861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.086 4.086 5 C -0.118 4.118 6 H 0.120 0.880 7 C -0.148 4.148 8 C -0.191 4.191 9 H 0.122 0.878 10 C 0.545 3.455 11 O -0.546 6.546 12 N -0.691 5.691 13 C 0.069 3.931 14 H 0.130 0.870 15 C -0.183 4.183 16 C -0.096 4.096 17 C -0.098 4.098 18 C 0.149 3.851 19 N -0.589 5.589 20 C -0.252 4.252 21 H 0.064 0.936 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.174 3.826 29 C -0.104 4.104 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.402 0.598 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.019 0.981 47 H 0.055 0.945 48 H 0.253 0.747 49 H 0.018 0.982 50 H 0.090 0.910 51 H 0.043 0.957 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.374 9.678 -12.467 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.123 4.123 5 C -0.136 4.136 6 H 0.138 0.862 7 C -0.186 4.186 8 C -0.212 4.212 9 H 0.140 0.860 10 C 0.332 3.668 11 O -0.424 6.424 12 N -0.339 5.339 13 C -0.037 4.037 14 H 0.147 0.853 15 C -0.221 4.221 16 C -0.098 4.098 17 C -0.138 4.138 18 C 0.023 3.977 19 N -0.312 5.312 20 C -0.382 4.382 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.547 5.547 24 Si 0.730 3.270 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.048 3.952 29 C -0.143 4.143 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.238 0.762 42 H 0.115 0.885 43 H 0.110 0.890 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.036 0.964 50 H 0.108 0.892 51 H 0.062 0.938 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.070 10.184 -12.810 23.647 hybrid contribution 0.201 -1.233 0.448 1.327 sum -16.869 8.951 -12.362 22.749 Atomic orbital electron populations 1.21846 0.95271 1.01638 1.01762 1.21070 0.95425 0.96512 0.98260 1.21915 1.01658 0.95724 1.01537 1.21289 0.92012 1.00724 0.98275 1.22509 0.95011 0.97479 0.98649 0.86182 1.23112 1.03449 0.94913 0.97086 1.22289 0.96525 1.07744 0.94647 0.86006 1.19621 0.85424 0.81905 0.79880 1.90665 1.69552 1.30685 1.51517 1.45345 1.18910 1.39358 1.30331 1.21872 0.84862 1.02297 0.94665 0.85251 1.23538 1.03367 1.00601 0.94628 1.21959 0.94203 0.92864 1.00759 1.21687 0.91933 0.99501 1.00630 1.20854 0.95758 0.87707 0.93405 1.43959 1.04147 1.02487 1.80563 1.19182 1.07405 0.95373 1.16197 0.91829 1.25056 0.99678 0.99778 0.95153 1.70026 1.39134 1.30618 1.14903 0.86327 0.78766 0.83966 0.77901 1.21390 1.21576 1.20492 1.20739 0.82302 1.01324 0.90873 1.21805 0.97880 0.92930 1.01711 0.92714 0.92717 0.92751 0.91020 0.92732 0.92070 0.92927 0.91570 0.91355 0.88249 0.87799 0.76198 0.88510 0.88951 0.91854 0.92884 0.96277 0.92663 0.93665 0.96426 0.89229 0.93826 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 2 C -0.09 -0.64 2.92 -90.62 -0.26 -0.91 16 3 C -0.15 -1.11 9.01 37.16 0.33 -0.78 16 4 C -0.09 -0.62 4.96 -26.73 -0.13 -0.75 16 5 C -0.12 -1.09 5.03 -90.62 -0.46 -1.55 16 6 H 0.12 1.32 5.91 -51.93 -0.31 1.01 16 7 C -0.15 -1.33 9.88 -26.73 -0.26 -1.59 16 8 C -0.19 -1.93 5.91 -91.77 -0.54 -2.48 16 9 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 10 C 0.54 7.49 7.61 -10.99 -0.08 7.41 16 11 O -0.55 -9.40 15.83 5.56 0.09 -9.31 16 12 N -0.69 -9.21 5.35 -53.89 -0.29 -9.50 16 13 C 0.07 1.03 6.13 -68.01 -0.42 0.61 16 14 H 0.13 2.07 7.40 -51.93 -0.38 1.68 16 15 C -0.18 -2.69 9.87 -26.75 -0.26 -2.95 16 16 C -0.10 -1.60 1.94 -154.45 -0.30 -1.90 16 17 C -0.10 -1.71 5.83 -26.46 -0.15 -1.87 16 18 C 0.15 3.11 6.52 -3.68 -0.02 3.09 16 19 N -0.59 -14.55 2.93 -172.26 -0.51 -15.05 16 20 C -0.25 -6.85 9.54 -15.06 -0.14 -6.99 16 21 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 22 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 23 N -0.90 -25.84 11.21 55.49 0.62 -25.22 16 24 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.17 4.02 5.39 -3.67 -0.02 4.00 16 29 C -0.10 -1.89 5.37 -26.45 -0.14 -2.04 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.51 6.41 -51.93 -0.33 0.18 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.43 7.88 -51.93 -0.41 0.02 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 41 H 0.40 4.70 7.12 -40.82 -0.29 4.41 16 42 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 2.33 5.95 -51.93 -0.31 2.02 16 51 H 0.04 0.68 6.75 -51.93 -0.35 0.33 16 52 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 406.03 15.07 6.12 6.12 Total: -1.00 -30.60 406.03 -11.13 -41.74 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -9.52 Total: 4.02 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.62 Total: -9.26 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.17 Total: -49.77 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.60 -11.13 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016839607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.628 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds