Wall clock time and date at job start Tue Mar 31 2020 12:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46710 * 2 1 4 4 C 1.52996 * 109.47386 * 119.99670 * 2 1 3 5 5 C 1.52999 * 109.47507 * 175.00585 * 4 2 1 6 6 H 1.09005 * 115.54892 * 29.32247 * 5 4 2 7 7 C 1.52999 * 117.51547 * 243.63273 * 5 4 2 8 8 C 1.52996 * 117.50310 * 174.99990 * 5 4 2 9 9 H 1.09002 * 117.49750 * 0.02562 * 8 5 4 10 10 C 1.50698 * 117.49917 * 215.02470 * 8 5 4 11 11 O 1.21281 * 120.00333 * 0.08599 * 10 8 5 12 12 N 1.34778 * 120.00189 * 180.08731 * 10 8 5 13 13 C 1.46497 * 120.00385 * 179.97438 * 12 10 8 14 14 H 1.08996 * 115.55123 * 350.58277 * 13 12 10 15 15 C 1.53031 * 117.50360 * 136.26565 * 13 12 10 16 16 C 1.52813 * 117.50484 * 204.89738 * 13 12 10 17 17 C 1.53177 * 117.71749 * 144.89833 * 16 13 12 18 18 C 1.53344 * 108.77471 * 158.88772 * 17 16 13 19 19 N 1.46843 * 108.81613 * 51.30934 * 18 17 16 20 20 C 1.36938 * 120.38877 * 123.07748 * 19 18 17 21 21 H 1.08005 * 119.99546 * 330.70161 * 20 19 18 22 22 C 1.38804 * 120.00336 * 150.69988 * 20 19 18 23 23 N 1.31623 * 120.00061 * 342.83969 * 22 20 19 24 24 Si 1.86796 * 120.00075 * 162.84681 * 22 20 19 25 25 H 1.48506 * 109.47431 * 90.00008 * 24 22 20 26 26 H 1.48506 * 109.47158 * 209.99526 * 24 22 20 27 27 H 1.48497 * 109.47119 * 329.99586 * 24 22 20 28 28 C 1.46848 * 119.23166 * 303.10398 * 19 18 17 29 29 C 1.53190 * 117.71428 * 0.13916 * 16 13 12 30 30 H 1.08994 * 109.47432 * 299.99536 * 1 2 3 31 31 H 1.08996 * 109.47431 * 60.00487 * 1 2 3 32 32 H 1.09005 * 109.46469 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47501 * 239.99874 * 2 1 3 34 34 H 1.08997 * 109.47599 * 59.99638 * 3 2 1 35 35 H 1.09002 * 109.46741 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46875 * 299.99516 * 3 2 1 37 37 H 1.08996 * 109.47180 * 55.00038 * 4 2 1 38 38 H 1.09006 * 109.47424 * 295.00246 * 4 2 1 39 39 H 1.09001 * 117.49817 * 145.02821 * 7 5 4 40 40 H 1.08998 * 117.50223 * 359.97438 * 7 5 4 41 41 H 0.97009 * 119.99732 * 0.02562 * 12 10 8 42 42 H 1.08997 * 117.50832 * 214.96043 * 15 13 12 43 43 H 1.09004 * 117.49981 * 0.02562 * 15 13 12 44 44 H 1.09001 * 109.59113 * 278.67949 * 17 16 13 45 45 H 1.09007 * 109.58540 * 39.10198 * 17 16 13 46 46 H 1.09000 * 109.58308 * 291.50979 * 18 17 16 47 47 H 1.08999 * 109.69469 * 171.16987 * 18 17 16 48 48 H 0.96998 * 120.00508 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.57975 * 297.10036 * 28 19 18 50 50 H 1.09000 * 109.69175 * 176.77005 * 28 19 18 51 51 H 1.09001 * 109.58804 * 320.90319 * 29 16 13 52 52 H 1.08997 * 109.58514 * 81.18516 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5649 -0.8308 1.1881 6 1 4.0719 -0.0351 0.6423 7 6 4.1702 -2.2341 1.1153 8 6 4.2803 -1.4193 2.4057 9 1 3.6646 -1.7288 3.2502 10 6 5.6318 -0.8540 2.7591 11 8 6.1116 0.0351 2.0882 12 7 6.3074 -1.3365 3.8209 13 6 7.6214 -0.7874 4.1642 14 1 8.0545 -0.1096 3.4285 15 6 7.9042 -0.5018 5.6408 16 6 8.5792 -1.6854 4.9462 17 6 10.0753 -1.5702 4.6384 18 6 10.8682 -2.1160 5.8321 19 7 10.3546 -3.4489 6.1722 20 6 11.1940 -4.5307 6.1909 21 1 12.0585 -4.5546 5.5439 22 6 10.9339 -5.5964 7.0413 23 7 10.1057 -5.4442 8.0530 24 14 11.7594 -7.2466 6.7503 25 1 13.0467 -7.2934 7.4894 26 1 10.8723 -8.3357 7.2321 27 1 12.0156 -7.4227 5.2983 28 6 8.9301 -3.6086 6.4914 29 6 8.0980 -3.0932 5.3110 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6765 1.9565 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6055 -1.7197 1.2952 38 1 1.7517 -0.1582 2.1370 39 1 5.0756 -2.3614 0.5218 40 1 3.4823 -3.0795 1.1114 41 1 5.9238 -2.0479 4.3573 42 1 8.5237 0.3635 5.8765 43 1 7.1126 -0.7229 6.3567 44 1 10.3108 -2.1513 3.7468 45 1 10.3351 -0.5243 4.4745 46 1 10.7479 -1.4494 6.6860 47 1 11.9238 -2.1873 5.5701 48 1 9.9242 -6.1888 8.6475 49 1 8.6897 -3.0344 7.3862 50 1 8.7080 -4.6619 6.6627 51 1 7.0458 -3.0580 5.5934 52 1 8.2245 -3.7559 4.4549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016839607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:13 Heat of formation + Delta-G solvation = -6.555775 kcal Electronic energy + Delta-G solvation = -27037.742195 eV Core-core repulsion = 23423.633900 eV Total energy + Delta-G solvation = -3614.108295 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31745 -40.07858 -38.46395 -37.10110 -35.85216 -34.52718 -33.19873 -31.75501 -29.97924 -28.50107 -27.98879 -26.26326 -25.54062 -24.06139 -23.10334 -22.49525 -21.88220 -21.03959 -20.69524 -19.81858 -18.56167 -18.17652 -17.24890 -16.83247 -16.32524 -15.99587 -15.74967 -15.62115 -15.37300 -15.09754 -14.99879 -14.70582 -14.64712 -14.20019 -13.92045 -13.74783 -13.51985 -13.34038 -13.09582 -13.04485 -12.95733 -12.91199 -12.59493 -12.53954 -12.50374 -12.32986 -12.00994 -11.96876 -11.79001 -11.67108 -11.46368 -11.37939 -11.27516 -11.16641 -11.00289 -10.86937 -10.64197 -10.48009 -9.67469 -8.61115 -7.86305 -5.32779 1.41723 1.46108 1.47739 1.57424 2.03091 2.51587 2.80462 2.98716 3.28580 3.55166 3.64768 3.74182 3.81461 3.85559 3.86187 3.97771 4.08502 4.12320 4.14660 4.20491 4.32123 4.48672 4.52035 4.61219 4.70563 4.78341 4.83900 4.84566 4.86111 4.89200 4.92371 4.95771 4.96294 5.00021 5.03052 5.08490 5.11014 5.17562 5.20818 5.29444 5.29814 5.36420 5.41588 5.49827 5.53356 5.54864 5.56323 5.65761 5.78609 6.41678 6.51383 7.17034 7.20153 7.88749 8.39917 9.18729 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.022257 B = 0.002247 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.756470 B =12460.132853 C =13142.130861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.080 4.080 5 C -0.116 4.116 6 H 0.098 0.902 7 C -0.140 4.140 8 C -0.196 4.196 9 H 0.148 0.852 10 C 0.541 3.459 11 O -0.586 6.586 12 N -0.686 5.686 13 C 0.083 3.917 14 H 0.122 0.878 15 C -0.170 4.170 16 C -0.115 4.115 17 C -0.088 4.088 18 C 0.146 3.854 19 N -0.608 5.608 20 C -0.264 4.264 21 H 0.062 0.938 22 C -0.049 4.049 23 N -0.932 5.932 24 Si 0.964 3.036 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.273 1.273 28 C 0.180 3.820 29 C -0.088 4.088 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.130 0.870 41 H 0.412 0.588 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.018 0.982 47 H 0.052 0.948 48 H 0.250 0.750 49 H -0.001 1.001 50 H 0.056 0.944 51 H 0.071 0.929 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.067 9.762 -13.281 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.117 4.117 5 C -0.135 4.135 6 H 0.116 0.884 7 C -0.177 4.177 8 C -0.217 4.217 9 H 0.165 0.835 10 C 0.330 3.670 11 O -0.466 6.466 12 N -0.335 5.335 13 C -0.023 4.023 14 H 0.140 0.860 15 C -0.208 4.208 16 C -0.116 4.116 17 C -0.127 4.127 18 C 0.021 3.979 19 N -0.331 5.331 20 C -0.394 4.394 21 H 0.079 0.921 22 C -0.244 4.244 23 N -0.578 5.578 24 Si 0.792 3.208 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.198 1.198 28 C 0.054 3.946 29 C -0.127 4.127 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.148 0.852 41 H 0.249 0.751 42 H 0.127 0.873 43 H 0.119 0.881 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.036 0.964 47 H 0.070 0.930 48 H 0.059 0.941 49 H 0.017 0.983 50 H 0.074 0.926 51 H 0.090 0.910 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.770 10.275 -13.632 25.372 hybrid contribution 0.771 -1.186 0.690 1.574 sum -17.999 9.088 -12.942 23.960 Atomic orbital electron populations 1.21820 0.94258 1.02193 1.01985 1.21067 0.96204 0.95858 0.98096 1.21912 1.00628 0.96495 1.01804 1.21278 0.90335 1.01672 0.98400 1.22497 0.96143 0.97084 0.97755 0.88403 1.23200 1.03303 0.95573 0.95635 1.22346 0.94828 1.08512 0.95967 0.83467 1.20256 0.86431 0.81234 0.79112 1.90649 1.70763 1.32515 1.52713 1.45331 1.18256 1.39474 1.30444 1.21672 0.84990 1.00878 0.94755 0.86021 1.23620 1.03025 0.99613 0.94537 1.21814 0.93988 0.92550 1.03252 1.21525 0.92196 1.00621 0.98338 1.20972 0.96204 0.86105 0.94645 1.44228 1.04664 1.03426 1.80824 1.19474 1.07610 0.96523 1.15787 0.92076 1.25770 1.00749 1.02810 0.95095 1.70167 1.40651 1.31204 1.15759 0.85335 0.77634 0.79925 0.77887 1.21212 1.21658 1.19803 1.20550 0.82587 0.99198 0.92259 1.21528 0.98534 0.93658 0.98950 0.92599 0.92440 0.92019 0.91188 0.92786 0.93639 0.92361 0.90001 0.91253 0.89674 0.85201 0.75058 0.87326 0.88086 0.92847 0.90182 0.96448 0.92979 0.94058 0.98257 0.92563 0.91048 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.19 71.98 0.66 -0.73 16 2 C -0.09 -1.13 2.92 -10.79 -0.03 -1.16 16 3 C -0.15 -2.12 9.01 71.98 0.65 -1.47 16 4 C -0.08 -0.97 4.96 30.59 0.15 -0.82 16 5 C -0.12 -1.98 5.03 -10.80 -0.05 -2.03 16 6 H 0.10 2.15 5.91 -2.38 -0.01 2.14 16 7 C -0.14 -2.22 9.88 30.60 0.30 -1.92 16 8 C -0.20 -3.55 5.91 -11.54 -0.07 -3.62 16 9 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 10 C 0.54 14.15 7.61 87.66 0.67 14.82 16 11 O -0.59 -19.94 15.83 -3.03 -0.05 -19.99 16 12 N -0.69 -16.94 5.35 -442.79 -2.37 -19.30 16 13 C 0.08 2.33 6.13 44.94 0.28 2.61 16 14 H 0.12 3.70 7.40 -2.39 -0.02 3.68 16 15 C -0.17 -4.58 9.87 30.58 0.30 -4.28 16 16 C -0.11 -3.63 1.94 -52.14 -0.10 -3.73 16 17 C -0.09 -2.97 5.83 30.77 0.18 -2.79 16 18 C 0.15 6.08 6.52 86.43 0.56 6.64 16 19 N -0.61 -30.44 2.93 -698.91 -2.05 -32.49 16 20 C -0.26 -14.54 9.54 84.03 0.80 -13.74 16 21 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 22 C -0.05 -2.71 4.90 84.86 0.42 -2.30 16 23 N -0.93 -54.54 11.21 21.65 0.24 -54.30 16 24 Si 0.96 44.71 29.59 68.60 2.03 46.74 16 25 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 28 C 0.18 8.44 5.39 86.43 0.47 8.91 16 29 C -0.09 -3.12 5.37 30.77 0.17 -2.95 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 35 H 0.04 0.77 6.41 -2.39 -0.02 0.76 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.77 7.88 -2.39 -0.02 0.75 16 38 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.13 1.39 8.03 -2.39 -0.02 1.38 16 41 H 0.41 8.56 7.12 -92.70 -0.66 7.90 16 42 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.08 2.27 8.10 -2.38 -0.02 2.25 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.05 2.14 7.92 -2.39 -0.02 2.12 16 48 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 49 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 50 H 0.06 3.01 5.95 -2.39 -0.01 2.99 16 51 H 0.07 2.11 6.75 -2.39 -0.02 2.09 16 52 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -67.34 406.03 3.37 -63.96 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.22 Total: 23.94 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.35 Total: -8.57 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -4.18 Total: -106.09 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.34 3.37 -63.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016839607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.406 kcal (2) G-P(sol) polarization free energy of solvation -67.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds