Wall clock time and date at job start Tue Mar 31 2020 12:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46683 * 2 1 4 4 C 1.50700 * 109.46988 * 119.99843 * 2 1 3 5 5 O 1.21275 * 119.99936 * 236.89662 * 4 2 1 6 6 N 1.34782 * 119.99946 * 56.89736 * 4 2 1 7 7 C 1.46904 * 125.61389 * 354.68759 * 6 4 2 8 8 C 1.54211 * 107.63197 * 178.52258 * 7 6 4 9 9 H 1.09002 * 113.72543 * 215.28508 * 8 7 6 10 10 C 1.54833 * 108.90881 * 87.30368 * 8 7 6 11 11 C 1.54137 * 104.63305 * 214.24840 * 10 8 7 12 12 C 1.53869 * 106.49378 * 24.50003 * 11 10 8 13 13 H 1.09000 * 110.09152 * 238.86786 * 12 11 10 14 14 N 1.46498 * 109.92482 * 117.65011 * 12 11 10 15 15 C 1.36939 * 119.99880 * 87.16203 * 14 12 11 16 16 H 1.07994 * 120.00092 * 0.02562 * 15 14 12 17 17 C 1.38818 * 119.99611 * 180.02562 * 15 14 12 18 18 N 1.31615 * 120.00281 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99450 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47693 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46890 * 120.00489 * 19 17 15 22 22 H 1.48501 * 109.46807 * 239.99851 * 19 17 15 23 23 C 1.53713 * 107.02994 * 358.30402 * 12 11 10 24 24 H 1.08995 * 112.97230 * 214.87746 * 23 12 11 25 25 C 1.48743 * 125.79660 * 175.65832 * 6 4 2 26 26 C 1.52998 * 109.47067 * 240.00182 * 2 1 3 27 27 C 1.53778 * 113.61363 * 151.85477 * 26 2 1 28 28 C 1.53788 * 87.07813 * 220.01605 * 27 26 2 29 29 C 1.53776 * 113.61616 * 54.35446 * 26 2 1 30 30 H 1.08995 * 109.46919 * 284.15170 * 1 2 3 31 31 H 1.08998 * 109.47048 * 44.15433 * 1 2 3 32 32 H 1.08998 * 109.46792 * 164.15402 * 1 2 3 33 33 H 1.09011 * 109.46792 * 174.67834 * 3 2 1 34 34 H 1.08993 * 109.47303 * 294.67297 * 3 2 1 35 35 H 1.08991 * 109.47338 * 54.68461 * 3 2 1 36 36 H 1.08997 * 109.82469 * 58.99719 * 7 6 4 37 37 H 1.09002 * 109.82719 * 298.04273 * 7 6 4 38 38 H 1.08994 * 110.40846 * 333.03251 * 10 8 7 39 39 H 1.08998 * 110.40856 * 95.34442 * 10 8 7 40 40 H 1.09007 * 110.05412 * 265.24440 * 11 10 8 41 41 H 1.09000 * 110.05487 * 143.76022 * 11 10 8 42 42 H 0.97000 * 120.00185 * 267.44477 * 14 12 11 43 43 H 0.97002 * 119.99958 * 179.97438 * 18 17 15 44 44 H 1.09006 * 111.62024 * 85.07633 * 25 6 4 45 45 H 1.08998 * 109.63488 * 322.50365 * 25 6 4 46 46 H 1.09007 * 112.84509 * 283.15607 * 26 2 1 47 47 H 1.08998 * 113.61480 * 334.55993 * 27 26 2 48 48 H 1.08994 * 113.61593 * 105.46893 * 27 26 2 49 49 H 1.08996 * 113.61153 * 270.87674 * 28 27 26 50 50 H 1.09002 * 113.69015 * 139.99572 * 28 27 26 51 51 H 1.09005 * 113.61337 * 254.52539 * 29 26 2 52 52 H 1.08999 * 113.61861 * 25.42988 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7753 -0.1387 1.9999 6 7 1.6560 -1.9811 1.4759 7 6 0.6803 -2.7508 0.6924 8 6 0.5922 -4.1605 1.3112 9 1 0.4363 -4.9522 0.5783 10 6 -0.4610 -4.1454 2.4460 11 6 0.0848 -5.1320 3.4970 12 6 1.6083 -5.1921 3.2900 13 1 1.9163 -6.2144 3.0706 14 7 2.2948 -4.7113 4.4916 15 6 2.5790 -5.5797 5.5115 16 1 2.2974 -6.6191 5.4299 17 6 3.2289 -5.1239 6.6503 18 7 3.5716 -3.8571 6.7499 19 14 3.6172 -6.3088 8.0413 20 1 3.1318 -7.6663 7.6853 21 1 5.0853 -6.3503 8.2607 22 1 2.9438 -5.8516 9.2833 23 6 1.9371 -4.2788 2.0981 24 1 2.7605 -4.6530 1.4899 25 6 2.1421 -2.8318 2.5950 26 6 2.0401 -0.7212 -1.2493 27 6 3.4167 -0.2289 -1.7259 28 6 2.8749 -0.3473 -3.1603 29 6 1.4712 -0.1568 -2.5617 30 1 -0.3633 0.2512 0.9964 31 1 -0.3633 0.7373 -0.7159 32 1 -0.3633 -0.9886 -0.2806 33 1 3.1259 1.4440 0.0953 34 1 1.7566 1.9281 -0.9338 35 1 1.6010 1.9831 0.8385 36 1 1.0117 -2.8219 -0.3435 37 1 -0.2949 -2.2659 0.7372 38 1 -0.5467 -3.1457 2.8718 39 1 -1.4277 -4.4824 2.0719 40 1 -0.3522 -6.1191 3.3455 41 1 -0.1421 -4.7724 4.5006 42 1 2.5443 -3.7769 4.5665 43 1 4.0254 -3.5386 7.5459 44 1 1.5704 -2.6606 3.5072 45 1 3.2005 -2.6382 2.7692 46 1 1.9656 -1.8060 -1.1717 47 1 3.6417 0.7949 -1.4273 48 1 4.2283 -0.9228 -1.5071 49 1 3.0301 -1.3298 -3.6059 50 1 3.1850 0.4678 -3.8142 51 1 0.7123 -0.7926 -3.0178 52 1 1.1643 0.8867 -2.4917 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026321854.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:57 Heat of formation + Delta-G solvation = 2.928689 kcal Electronic energy + Delta-G solvation = -29173.728880 eV Core-core repulsion = 25560.031863 eV Total energy + Delta-G solvation = -3613.697018 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03770 -39.55215 -37.96719 -35.11103 -33.92428 -33.16305 -30.93981 -29.26751 -28.45034 -27.60523 -26.10479 -25.46283 -25.22070 -24.05746 -23.21947 -21.72360 -19.72590 -19.33181 -18.82567 -18.62379 -17.25239 -16.97018 -15.90972 -15.72570 -15.50201 -15.10352 -14.83996 -14.33363 -13.99819 -13.85105 -13.37795 -13.26644 -13.19025 -12.85120 -12.76186 -12.67743 -12.39370 -12.20233 -12.16901 -11.88076 -11.72537 -11.55784 -11.42296 -11.27729 -11.19603 -10.82199 -10.71022 -10.65760 -10.55885 -10.35825 -10.35273 -10.26277 -10.17444 -10.09609 -9.82575 -9.59584 -9.29139 -8.89252 -8.34033 -6.94422 -5.74253 -3.04112 2.86377 3.17527 3.44557 3.49835 3.52529 4.28634 4.35929 4.45139 4.51512 4.60047 4.64018 4.69104 4.79678 4.92958 4.96134 5.08656 5.18685 5.31728 5.39293 5.46433 5.49161 5.51664 5.54522 5.54764 5.60607 5.64015 5.67094 5.69305 5.77682 5.81257 5.83017 5.86972 5.94111 5.96739 6.01099 6.05841 6.07514 6.09007 6.17779 6.27648 6.37343 6.39223 6.52435 6.53699 6.58439 6.69590 6.80615 7.11138 7.73055 7.79964 8.41711 8.44327 9.54664 10.12027 10.45264 11.47969 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.003352 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.579903 B = 8351.347116 C = 8925.731756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C -0.129 4.129 4 C 0.535 3.465 5 O -0.537 6.537 6 N -0.615 5.615 7 C 0.099 3.901 8 C -0.105 4.105 9 H 0.100 0.900 10 C -0.114 4.114 11 C -0.145 4.145 12 C 0.182 3.818 13 H 0.053 0.947 14 N -0.725 5.725 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.012 4.012 18 N -0.930 5.930 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.105 4.105 24 H 0.086 0.914 25 C 0.119 3.881 26 C -0.105 4.105 27 C -0.144 4.144 28 C -0.142 4.142 29 C -0.131 4.131 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 6.166 -21.700 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C -0.187 4.187 4 C 0.323 3.677 5 O -0.414 6.414 6 N -0.349 5.349 7 C -0.024 4.024 8 C -0.124 4.124 9 H 0.118 0.882 10 C -0.152 4.152 11 C -0.186 4.186 12 C 0.071 3.929 13 H 0.071 0.929 14 N -0.368 5.368 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.578 5.578 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.125 4.125 24 H 0.104 0.896 25 C -0.002 4.002 26 C -0.123 4.123 27 C -0.181 4.181 28 C -0.180 4.180 29 C -0.168 4.168 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.223 0.777 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.110 0.890 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.085 0.915 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.915 6.424 -21.152 23.481 hybrid contribution 0.253 -0.436 0.959 1.083 sum -7.662 5.988 -20.193 22.413 Atomic orbital electron populations 1.22045 0.92909 1.03009 1.02479 1.20652 0.96895 0.96575 0.92900 1.21787 1.02251 0.93168 1.01449 1.20183 0.80683 0.80101 0.86767 1.90719 1.36955 1.64883 1.48793 1.48843 1.43284 1.12573 1.30232 1.22336 0.92655 0.92278 0.95107 1.23176 0.96595 0.95217 0.97379 0.88217 1.22380 0.96942 1.00378 0.95503 1.22975 0.98696 0.97681 0.99234 1.20674 0.90478 0.95607 0.86098 0.92856 1.42724 1.68848 1.10068 1.15197 1.19285 1.31087 0.91758 0.95178 0.91125 1.24757 1.01439 0.96130 0.98535 1.69673 1.45839 1.13279 1.28989 0.86148 0.77683 0.80012 0.82511 1.20592 1.21910 1.21928 1.23208 0.96535 0.95294 0.97484 0.89554 1.22403 1.00846 0.87833 0.89144 1.22749 0.97020 1.00196 0.92380 1.23156 0.96577 1.02597 0.95792 1.22791 0.96747 1.01842 0.96574 1.22941 0.96750 1.01459 0.95690 0.92273 0.91618 0.91148 0.91290 0.92109 0.92203 0.91621 0.91021 0.91842 0.92424 0.93037 0.90799 0.77738 0.93485 0.89855 0.90422 0.88371 0.88995 0.91615 0.90381 0.91570 0.91496 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.18 37.16 0.27 -1.10 16 2 C -0.07 -0.76 0.46 -155.66 -0.07 -0.83 16 3 C -0.13 -1.42 6.48 37.16 0.24 -1.18 16 4 C 0.53 8.52 6.52 -10.98 -0.07 8.45 16 5 O -0.54 -11.03 16.20 5.56 0.09 -10.94 16 6 N -0.62 -9.25 3.32 -169.94 -0.56 -9.82 16 7 C 0.10 1.12 4.33 -3.19 -0.01 1.11 16 8 C -0.10 -1.27 4.18 -87.26 -0.37 -1.64 16 9 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 10 C -0.11 -1.53 5.61 -25.17 -0.14 -1.67 16 11 C -0.15 -2.44 6.56 -25.68 -0.17 -2.61 16 12 C 0.18 3.46 3.24 -67.11 -0.22 3.25 16 13 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 14 N -0.73 -17.83 4.79 -52.63 -0.25 -18.08 16 15 C -0.24 -6.65 9.95 -15.06 -0.15 -6.80 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 19 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 C -0.11 -1.67 4.01 -87.78 -0.35 -2.03 16 24 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 25 C 0.12 2.16 4.49 -2.09 -0.01 2.15 16 26 C -0.11 -1.00 2.79 -89.81 -0.25 -1.25 16 27 C -0.14 -1.39 7.24 -25.92 -0.19 -1.58 16 28 C -0.14 -1.08 8.08 -25.92 -0.21 -1.29 16 29 C -0.13 -0.96 6.62 -25.92 -0.17 -1.13 16 30 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 31 H 0.06 0.49 7.70 -51.93 -0.40 0.09 16 32 H 0.07 0.58 5.11 -51.93 -0.27 0.31 16 33 H 0.07 0.85 6.33 -51.92 -0.33 0.52 16 34 H 0.06 0.51 6.61 -51.93 -0.34 0.17 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.63 5.51 -51.93 -0.29 0.34 16 37 H 0.07 0.73 5.63 -51.93 -0.29 0.44 16 38 H 0.06 0.93 7.33 -51.93 -0.38 0.55 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.46 7.91 -51.93 -0.41 1.05 16 42 H 0.39 10.18 5.33 -40.82 -0.22 9.96 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 44 H 0.08 1.72 6.28 -51.93 -0.33 1.40 16 45 H 0.08 1.63 8.08 -51.93 -0.42 1.21 16 46 H 0.10 0.97 5.24 -51.92 -0.27 0.70 16 47 H 0.09 0.89 5.52 -51.93 -0.29 0.61 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.08 0.57 6.56 -51.93 -0.34 0.23 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -32.19 376.18 -10.08 -42.27 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -8.76 Total: 9.77 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.97 Total: -8.61 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.09 Total: -55.65 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.19 -10.08 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026321854.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.200 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds