Wall clock time and date at job start Tue Mar 31 2020 12:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47152 * 2 1 4 4 C 1.53003 * 109.47235 * 240.00738 * 2 1 3 5 5 C 1.53002 * 109.47454 * 120.00425 * 2 1 3 6 6 C 1.54408 * 129.01625 * 60.00096 * 5 2 1 7 7 C 1.54413 * 78.89511 * 180.64698 * 6 5 2 8 8 C 1.50701 * 129.01023 * 180.64667 * 7 6 5 9 9 O 1.21277 * 120.00258 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99489 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99787 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47030 * 185.08995 * 11 10 8 13 13 H 1.08996 * 109.87432 * 303.55380 * 12 11 10 14 14 C 1.54328 * 109.88316 * 64.57066 * 12 11 10 15 15 C 1.55158 * 102.94171 * 141.76299 * 14 12 11 16 16 C 1.54913 * 101.58052 * 324.50056 * 15 14 12 17 17 N 1.47026 * 110.00957 * 182.45323 * 12 11 10 18 18 C 1.36942 * 125.64404 * 61.55378 * 17 12 11 19 19 H 1.07997 * 120.00101 * 13.59852 * 18 17 12 20 20 C 1.38811 * 119.99917 * 193.60057 * 18 17 12 21 21 N 1.31624 * 119.99726 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00193 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47160 * 59.99908 * 22 20 18 24 24 H 1.48501 * 109.47188 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47093 * 300.00039 * 22 20 18 26 26 C 1.54890 * 84.49319 * 43.15398 * 7 6 5 27 27 C 1.54890 * 84.49235 * 318.13444 * 7 6 5 28 28 H 1.09004 * 109.47096 * 299.99407 * 1 2 3 29 29 H 1.08998 * 109.47774 * 59.99933 * 1 2 3 30 30 H 1.09003 * 109.46759 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47392 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46836 * 300.00641 * 3 2 1 33 33 H 1.09004 * 109.46636 * 60.00311 * 3 2 1 34 34 H 1.09003 * 109.46792 * 299.99422 * 4 2 1 35 35 H 1.08998 * 109.47288 * 59.99031 * 4 2 1 36 36 H 1.08998 * 109.47308 * 179.97438 * 4 2 1 37 37 H 1.08993 * 114.93254 * 68.15467 * 6 5 2 38 38 H 1.09007 * 114.92832 * 293.13864 * 6 5 2 39 39 H 0.97000 * 120.00130 * 359.97438 * 10 8 7 40 40 H 1.08994 * 109.47435 * 65.09161 * 11 10 8 41 41 H 1.09001 * 109.47161 * 305.08373 * 11 10 8 42 42 H 1.08994 * 110.72131 * 260.12596 * 14 12 11 43 43 H 1.08995 * 110.71653 * 23.40045 * 14 12 11 44 44 H 1.08994 * 111.00462 * 82.56918 * 15 14 12 45 45 H 1.09002 * 111.00489 * 206.42524 * 15 14 12 46 46 H 1.09002 * 110.36601 * 155.84930 * 16 15 14 47 47 H 1.09005 * 110.36374 * 278.16581 * 16 15 14 48 48 H 0.97001 * 120.00001 * 180.02562 * 21 20 18 49 49 H 1.08993 * 114.98022 * 69.39392 * 26 7 6 50 50 H 1.08999 * 114.97519 * 204.56488 * 26 7 6 51 51 H 1.09004 * 114.97640 * 155.43543 * 27 7 6 52 52 H 1.09001 * 114.97901 * 290.60790 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.7986 -2.1794 1.6964 7 6 2.6732 -1.6537 2.8554 8 6 3.1650 -2.3831 4.0790 9 8 2.8745 -3.5484 4.2479 10 7 3.9276 -1.7404 4.9854 11 6 4.4061 -2.4496 6.1747 12 6 5.1352 -1.4683 7.0947 13 1 5.9464 -0.9838 6.5514 14 6 4.1459 -0.4057 7.6182 15 6 4.6048 -0.1966 9.0855 16 6 5.0460 -1.6282 9.4804 17 7 5.6715 -2.1792 8.2646 18 6 6.5985 -3.1866 8.2304 19 1 7.1588 -3.3743 7.3265 20 6 6.8178 -3.9665 9.3575 21 7 6.1351 -3.7374 10.4593 22 14 8.0816 -5.3412 9.3107 23 1 9.4187 -4.7740 9.0012 24 1 8.1246 -6.0193 10.6312 25 1 7.7059 -6.3235 8.2623 26 6 1.7756 -0.3947 2.7637 27 6 3.4908 -0.9713 1.7307 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6767 -1.7488 -1.2494 35 1 1.6765 -0.2073 -2.1393 36 1 3.1300 -0.7207 -1.2496 37 1 2.2714 -2.9362 1.0706 38 1 0.7687 -2.4124 1.9670 39 1 4.1602 -0.8085 4.8501 40 1 5.0907 -3.2426 5.8739 41 1 3.5582 -2.8831 6.7050 42 1 4.2377 0.5198 7.0499 43 1 3.1232 -0.7809 7.5837 44 1 5.4427 0.4986 9.1376 45 1 3.7778 0.1433 9.7089 46 1 5.7687 -1.5911 10.2955 47 1 4.1808 -2.2264 9.7664 48 1 6.2886 -4.2821 11.2471 49 1 0.7450 -0.5397 3.0872 50 1 2.2302 0.5227 3.1375 51 1 4.0525 -0.0898 2.0400 52 1 4.0551 -1.6524 1.0937 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028341511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:50 Heat of formation + Delta-G solvation = 65.122548 kcal Electronic energy + Delta-G solvation = -27717.853298 eV Core-core repulsion = 24106.853209 eV Total energy + Delta-G solvation = -3611.000089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32621 -38.95098 -37.52349 -36.20882 -34.20430 -32.47261 -29.74170 -28.81249 -27.76949 -27.75260 -25.89581 -25.66153 -25.55553 -24.64498 -23.49677 -21.54758 -20.26266 -19.76151 -18.97929 -17.81911 -17.03952 -16.48873 -15.84069 -15.08876 -14.86929 -14.64889 -14.54620 -14.49304 -14.32121 -14.26360 -13.99101 -13.77955 -13.07791 -13.03911 -12.64037 -12.58373 -12.09789 -11.99822 -11.88907 -11.79142 -11.61971 -11.51310 -11.33850 -11.31401 -11.13645 -11.01934 -10.98771 -10.93703 -10.77236 -10.29797 -10.23636 -10.20437 -10.12727 -9.93784 -9.83928 -9.71291 -9.46716 -8.66234 -8.57015 -6.85093 -5.76302 -3.13051 2.71141 3.35805 3.42223 3.45692 3.46981 3.91248 4.02451 4.15353 4.26917 4.45503 4.50414 4.51319 4.80305 4.82952 4.91797 5.20424 5.32774 5.33395 5.33781 5.40167 5.41967 5.42581 5.48224 5.50367 5.56595 5.60167 5.60648 5.62369 5.72065 5.73766 5.74858 5.79560 5.80831 5.84123 6.05384 6.06130 6.06515 6.13436 6.21395 6.24240 6.45495 6.54403 6.62571 6.70969 6.82021 7.05942 7.52030 7.60008 7.79006 7.82469 8.25635 8.51744 9.17424 9.77973 10.44906 11.35306 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.002603 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.962446 B =10752.825109 C =11429.384379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.106 4.106 6 C -0.089 4.089 7 C -0.160 4.160 8 C 0.566 3.434 9 O -0.537 6.537 10 N -0.716 5.716 11 C 0.109 3.891 12 C 0.153 3.847 13 H 0.037 0.963 14 C -0.126 4.126 15 C -0.149 4.149 16 C 0.172 3.828 17 N -0.589 5.589 18 C -0.234 4.234 19 H 0.075 0.925 20 C -0.002 4.002 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C -0.100 4.100 27 C -0.098 4.098 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.396 0.604 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.025 0.975 48 H 0.254 0.746 49 H 0.075 0.925 50 H 0.078 0.922 51 H 0.079 0.921 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 12.663 -20.099 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.006 4.006 3 C -0.197 4.197 4 C -0.198 4.198 5 C -0.106 4.106 6 C -0.126 4.126 7 C -0.163 4.163 8 C 0.350 3.650 9 O -0.413 6.413 10 N -0.366 5.366 11 C -0.016 4.016 12 C 0.044 3.956 13 H 0.055 0.945 14 C -0.164 4.164 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.313 5.313 18 C -0.363 4.363 19 H 0.093 0.907 20 C -0.199 4.199 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.138 4.138 27 C -0.135 4.135 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.229 0.771 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.043 0.957 48 H 0.065 0.935 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.097 0.903 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.917 11.623 -19.742 24.964 hybrid contribution 0.755 -0.506 0.080 0.913 sum -9.162 11.117 -19.662 24.374 Atomic orbital electron populations 1.21825 0.94015 1.02095 1.01830 1.19531 0.95239 0.94476 0.91312 1.21826 1.01270 0.94785 1.01840 1.21828 1.01279 1.00414 0.96275 1.24347 0.96411 0.96276 0.93608 1.23749 0.99200 0.95505 0.94186 1.23856 0.99640 0.98239 0.94596 1.18649 0.78223 0.86092 0.82027 1.90716 1.57479 1.16435 1.76712 1.46030 1.52106 1.15163 1.23272 1.22261 0.98845 0.96457 0.84052 1.21117 0.93211 0.91526 0.89743 0.94546 1.22599 0.98841 0.97661 0.97268 1.23009 0.99685 1.00664 0.95373 1.21477 0.96674 0.87091 0.90064 1.44482 1.46504 1.40772 0.99535 1.18944 1.12111 1.06648 0.98556 0.90682 1.24902 0.99703 0.98765 0.96508 1.69928 1.43041 1.41196 1.02067 0.86218 0.80801 0.82040 0.76832 1.21068 1.21543 1.20943 1.24534 0.99015 0.95561 0.94660 1.24069 0.95347 0.99409 0.94685 0.92431 0.92434 0.92443 0.92432 0.92471 0.92420 0.92432 0.92425 0.92448 0.90716 0.90661 0.77122 0.91521 0.91555 0.92445 0.91845 0.92305 0.92354 0.90729 0.95709 0.93542 0.90595 0.90355 0.90299 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.47 37.15 0.31 -0.58 16 2 C -0.01 -0.04 1.02 -154.51 -0.16 -0.20 16 3 C -0.14 -0.85 8.47 37.16 0.31 -0.54 16 4 C -0.14 -0.91 8.47 37.16 0.31 -0.60 16 5 C -0.11 -0.90 1.67 -169.84 -0.28 -1.18 16 6 C -0.09 -0.96 7.78 -26.72 -0.21 -1.17 16 7 C -0.16 -1.93 3.36 -172.26 -0.58 -2.50 16 8 C 0.57 9.30 7.94 -10.99 -0.09 9.21 16 9 O -0.54 -11.33 17.09 5.56 0.10 -11.23 16 10 N -0.72 -11.06 5.33 -60.29 -0.32 -11.38 16 11 C 0.11 2.14 5.08 -4.04 -0.02 2.11 16 12 C 0.15 3.02 3.21 -66.95 -0.22 2.80 16 13 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 14 C -0.13 -2.09 6.10 -24.89 -0.15 -2.25 16 15 C -0.15 -2.72 7.09 -24.58 -0.17 -2.90 16 16 C 0.17 4.10 5.43 -2.53 -0.01 4.09 16 17 N -0.59 -14.66 3.13 -162.57 -0.51 -15.17 16 18 C -0.23 -6.45 9.77 -15.06 -0.15 -6.59 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 21 N -0.92 -26.77 10.53 55.49 0.58 -26.19 16 22 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.10 -0.94 7.95 -24.72 -0.20 -1.14 16 27 C -0.10 -0.93 7.84 -25.98 -0.20 -1.13 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.82 7.94 -51.93 -0.41 0.41 16 38 H 0.07 0.82 7.91 -51.93 -0.41 0.41 16 39 H 0.40 4.90 8.33 -40.82 -0.34 4.56 16 40 H 0.07 1.48 7.92 -51.93 -0.41 1.07 16 41 H 0.07 1.46 8.08 -51.93 -0.42 1.04 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.06 7.81 -51.93 -0.41 0.65 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.98 6.85 -51.93 -0.36 1.63 16 47 H 0.02 0.65 8.08 -51.93 -0.42 0.23 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 50 H 0.08 0.65 7.97 -51.93 -0.41 0.23 16 51 H 0.08 0.66 7.97 -51.93 -0.41 0.25 16 52 H 0.07 0.73 7.93 -51.93 -0.41 0.31 16 LS Contribution 408.77 15.07 6.16 6.16 Total: -1.00 -31.65 408.77 -10.47 -42.12 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -9.87 Total: 1.17 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.59 Total: -2.69 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.25 Total: -52.74 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.10 Total: -11.23 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.65 -10.47 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028341511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.246 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds