Wall clock time and date at job start Tue Mar 31 2020 12:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34781 * 120.00208 * 2 1 4 4 O 1.21281 * 120.00443 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99890 * 0.02562 * 3 2 1 6 6 C 1.54890 * 129.08776 * 299.94005 * 5 3 2 7 7 C 1.57168 * 77.91525 * 180.16253 * 6 5 3 8 8 C 1.52999 * 129.25126 * 179.20065 * 7 6 5 9 9 C 1.53003 * 109.46600 * 301.27806 * 8 7 6 10 10 C 1.52996 * 109.47535 * 61.27957 * 8 7 6 11 11 C 1.53001 * 109.47309 * 181.28317 * 8 7 6 12 12 C 1.54405 * 129.01518 * 179.97438 * 5 3 2 13 13 C 1.54894 * 129.08565 * 60.05905 * 5 3 2 14 14 C 1.46503 * 120.00183 * 180.02562 * 2 1 3 15 15 H 1.09001 * 110.88710 * 183.87330 * 14 2 1 16 16 C 1.55160 * 111.00158 * 59.99613 * 14 2 1 17 17 C 1.54325 * 102.94141 * 206.42382 * 16 14 2 18 18 N 1.47022 * 107.26808 * 22.19396 * 17 16 14 19 19 C 1.36943 * 125.64725 * 181.02022 * 18 17 16 20 20 H 1.08002 * 119.99788 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99622 * 0.30349 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99836 * 23 21 19 25 25 H 1.48497 * 109.47267 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47169 * 300.00118 * 23 21 19 27 27 C 1.47427 * 108.70607 * 1.28411 * 18 17 16 28 28 H 1.09004 * 109.46860 * 269.99832 * 1 2 3 29 29 H 1.09001 * 109.47395 * 29.99316 * 1 2 3 30 30 H 1.08997 * 109.47288 * 149.99708 * 1 2 3 31 31 H 1.08994 * 114.97799 * 291.95394 * 6 5 3 32 32 H 1.09000 * 114.97708 * 67.13155 * 6 5 3 33 33 H 1.09001 * 109.47002 * 60.00534 * 9 8 7 34 34 H 1.09005 * 109.46589 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47136 * 299.99984 * 9 8 7 36 36 H 1.09002 * 109.47100 * 59.99946 * 10 8 7 37 37 H 1.09001 * 109.46967 * 180.02562 * 10 8 7 38 38 H 1.09001 * 109.47290 * 300.00215 * 10 8 7 39 39 H 1.09001 * 109.47232 * 59.98882 * 11 8 7 40 40 H 1.08992 * 109.47613 * 179.97438 * 11 8 7 41 41 H 1.09002 * 109.46701 * 299.99672 * 11 8 7 42 42 H 1.09003 * 114.93325 * 293.12962 * 12 5 3 43 43 H 1.09000 * 114.93245 * 68.09798 * 12 5 3 44 44 H 1.09002 * 114.97679 * 292.86637 * 13 5 3 45 45 H 1.08998 * 114.97840 * 68.04725 * 13 5 3 46 46 H 1.08996 * 110.71761 * 88.06342 * 16 14 2 47 47 H 1.08996 * 110.87457 * 324.85806 * 16 14 2 48 48 H 1.09000 * 109.87990 * 262.77884 * 17 16 14 49 49 H 1.08991 * 109.88062 * 141.60908 * 17 16 14 50 50 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 51 51 H 1.09001 * 110.36238 * 94.47989 * 27 18 17 52 52 H 1.08998 * 110.36877 * 216.80572 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4724 0.0006 6 6 0.3770 3.0184 -1.0407 7 6 0.4172 4.1790 0.0184 8 6 -0.3278 5.5153 0.0189 9 6 0.0379 6.3034 -1.2406 10 6 -1.8359 5.2585 0.0400 11 6 0.0698 6.3205 1.2576 12 6 1.9383 3.9140 0.0012 13 6 0.3778 3.0179 1.0429 14 6 2.1975 -1.2687 -0.0006 15 1 3.2717 -1.0973 0.0683 16 6 1.8482 -2.1119 -1.2554 17 6 2.1063 -3.5582 -0.7827 18 7 2.0265 -3.5583 0.6854 19 6 2.2162 -4.6465 1.4948 20 1 2.1351 -4.5427 2.5668 21 6 2.5183 -5.8815 0.9378 22 7 2.6170 -6.0080 -0.3685 23 14 2.7847 -7.3642 2.0424 24 1 1.5545 -7.6189 2.8343 25 1 3.0912 -8.5541 1.2085 26 1 3.9195 -7.0984 2.9627 27 6 1.7021 -2.1944 1.1414 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 0.8075 3.2714 -2.0095 32 1 -0.5614 2.4676 -1.1054 33 1 -0.2454 5.7298 -2.1231 34 1 -0.4926 7.2556 -1.2400 35 1 1.1123 6.4864 -1.2556 36 1 -2.0963 4.6970 0.9372 37 1 -2.3666 6.2106 0.0398 38 1 -2.1192 4.6849 -0.8426 39 1 1.1443 6.5034 1.2427 40 1 -0.4605 7.2727 1.2578 41 1 -0.1906 5.7590 2.1549 42 1 2.4654 4.2036 0.9103 43 1 2.4471 4.2114 -0.9157 44 1 -0.5605 2.4671 1.1081 45 1 0.8091 3.2704 2.0116 46 1 2.5041 -1.8553 -2.0872 47 1 0.8032 -1.9782 -1.5346 48 1 3.0980 -3.8805 -1.1001 49 1 1.3482 -4.2238 -1.1952 50 1 2.8278 -6.8711 -0.7577 51 1 0.6264 -2.0867 1.2804 52 1 2.2298 -1.9687 2.0680 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033700367.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:01 Heat of formation + Delta-G solvation = 85.273714 kcal Electronic energy + Delta-G solvation = -28174.300899 eV Core-core repulsion = 24564.174629 eV Total energy + Delta-G solvation = -3610.126269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.46211 -39.32171 -37.21538 -36.22774 -34.75342 -32.09723 -29.28044 -27.89371 -27.78340 -27.66076 -26.84687 -25.70965 -25.60385 -25.37530 -24.12543 -21.83703 -20.11075 -19.65453 -18.57339 -17.80637 -16.95267 -16.83238 -16.16193 -15.01483 -14.78253 -14.66458 -14.54345 -14.48389 -14.38508 -14.32085 -14.06006 -13.44355 -12.99161 -12.77817 -12.65788 -12.61143 -12.38724 -12.29266 -12.02947 -11.98778 -11.72356 -11.59542 -11.53844 -11.33895 -11.14878 -11.06980 -11.03031 -10.94040 -10.81351 -10.73428 -10.28791 -10.25451 -10.21343 -10.11884 -9.82159 -9.70077 -9.47265 -8.61812 -8.32696 -6.84291 -5.70936 -3.05265 2.59924 3.08493 3.41716 3.45774 3.47139 3.87842 4.00228 4.11860 4.22914 4.39712 4.45285 4.51515 4.70015 4.78523 4.80959 5.08554 5.14861 5.31613 5.32237 5.34418 5.39212 5.40287 5.44460 5.46965 5.49841 5.58269 5.58918 5.59337 5.64470 5.69472 5.69578 5.72806 5.75723 5.76268 5.78609 5.82858 5.92196 6.04599 6.04760 6.17995 6.21452 6.31514 6.50713 6.59022 6.70713 6.97815 7.54393 7.59329 7.63068 7.82079 8.24583 8.36251 9.21434 9.81388 10.46548 11.40592 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.033098 B = 0.002470 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.764987 B =11335.570299 C =11421.609454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.593 5.593 3 C 0.570 3.430 4 O -0.537 6.537 5 C -0.157 4.157 6 C -0.103 4.103 7 C -0.105 4.105 8 C -0.005 4.005 9 C -0.140 4.140 10 C -0.140 4.140 11 C -0.141 4.141 12 C -0.088 4.088 13 C -0.097 4.097 14 C 0.123 3.877 15 H 0.106 0.894 16 C -0.153 4.153 17 C 0.180 3.820 18 N -0.603 5.603 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.132 3.868 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.045 0.955 50 H 0.253 0.747 51 H 0.022 0.978 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.804 25.101 -1.452 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.325 5.325 3 C 0.357 3.643 4 O -0.414 6.414 5 C -0.160 4.160 6 C -0.140 4.140 7 C -0.105 4.105 8 C -0.005 4.005 9 C -0.198 4.198 10 C -0.197 4.197 11 C -0.198 4.198 12 C -0.126 4.126 13 C -0.135 4.135 14 C 0.019 3.981 15 H 0.124 0.876 16 C -0.192 4.192 17 C 0.055 3.945 18 N -0.330 5.330 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.005 3.995 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.040 0.960 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.097 24.829 -1.484 26.485 hybrid contribution 0.120 -1.044 0.514 1.170 sum -8.977 23.785 -0.971 25.441 Atomic orbital electron populations 1.21962 0.79951 1.03308 1.01958 1.47689 1.06945 1.05701 1.72129 1.18677 0.86650 0.82945 0.75989 1.90694 1.13645 1.87042 1.50037 1.23758 0.98042 0.93644 1.00574 1.24647 0.97548 0.95190 0.96623 1.24358 0.96186 0.93271 0.96711 1.19531 0.94383 0.90603 0.96022 1.21827 1.01672 0.99510 0.96749 1.21826 0.94079 1.01647 1.02186 1.21826 1.01602 0.99420 0.96939 1.23739 0.94938 0.91691 1.02236 1.24111 0.97697 0.94964 0.96712 1.22532 0.97413 0.80898 0.97223 0.87556 1.23243 1.00490 0.98712 0.96756 1.21143 1.01014 0.88888 0.83462 1.44382 1.83060 1.03257 1.02291 1.19008 1.41327 0.86033 0.89365 0.90441 1.24812 1.01831 0.97708 0.96028 1.69944 1.54763 1.23588 1.08668 0.86174 0.78040 0.82129 0.79259 1.21165 1.21578 1.21116 1.21772 0.97027 0.85921 0.94770 0.92581 0.90947 0.90444 0.90532 0.90066 0.92442 0.92421 0.92449 0.92400 0.92447 0.92433 0.92440 0.92412 0.92431 0.90671 0.90650 0.90169 0.90695 0.91942 0.92122 0.93265 0.93703 0.93647 0.95996 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 8.24 59.84 0.49 1.35 16 2 N -0.59 -9.34 2.91 -171.35 -0.50 -9.84 16 3 C 0.57 9.25 7.78 -10.98 -0.09 9.17 16 4 O -0.54 -10.88 16.48 5.56 0.09 -10.79 16 5 C -0.16 -1.85 2.43 -172.27 -0.42 -2.27 16 6 C -0.10 -0.93 7.27 -24.70 -0.18 -1.11 16 7 C -0.11 -0.85 1.67 -169.85 -0.28 -1.14 16 8 C -0.01 -0.04 1.02 -154.51 -0.16 -0.19 16 9 C -0.14 -0.86 8.47 37.16 0.31 -0.54 16 10 C -0.14 -0.82 8.47 37.16 0.31 -0.51 16 11 C -0.14 -0.87 8.47 37.16 0.31 -0.56 16 12 C -0.09 -0.92 7.78 -26.72 -0.21 -1.13 16 13 C -0.10 -0.90 7.41 -25.99 -0.19 -1.10 16 14 C 0.12 2.36 3.47 -65.66 -0.23 2.13 16 15 H 0.11 2.29 7.02 -51.93 -0.36 1.93 16 16 C -0.15 -2.96 6.50 -24.89 -0.16 -3.12 16 17 C 0.18 4.43 5.37 -3.06 -0.02 4.41 16 18 N -0.60 -15.67 3.39 -169.94 -0.58 -16.24 16 19 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -27.30 10.31 55.49 0.57 -26.73 16 23 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.13 2.83 6.79 -2.41 -0.02 2.81 16 28 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.07 0.70 4.07 -51.93 -0.21 0.49 16 30 H 0.08 0.97 6.42 -51.93 -0.33 0.64 16 31 H 0.08 0.70 7.91 -51.93 -0.41 0.29 16 32 H 0.08 0.65 6.15 -51.93 -0.32 0.33 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.80 7.94 -51.93 -0.41 0.38 16 43 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 44 H 0.08 0.67 7.29 -51.93 -0.38 0.29 16 45 H 0.07 0.71 7.93 -51.93 -0.41 0.30 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.06 1.06 6.41 -51.93 -0.33 0.73 16 48 H 0.05 1.35 7.37 -51.93 -0.38 0.96 16 49 H 0.04 1.20 7.51 -51.93 -0.39 0.81 16 50 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 51 H 0.02 0.45 7.00 -51.93 -0.36 0.09 16 52 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -32.22 395.62 -9.57 -41.80 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -9.34 Total: -2.71 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.76 Total: 1.27 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.50 Total: -52.81 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.22 -9.57 -41.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033700367.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.071 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds