Wall clock time and date at job start Tue Mar 31 2020 12:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99459 * 2 1 4 4 C 1.50692 * 120.00302 * 180.02562 * 2 1 3 5 5 C 1.53002 * 109.47216 * 246.50113 * 4 2 1 6 6 C 1.53003 * 109.47057 * 126.50143 * 4 2 1 7 7 C 1.50700 * 109.47041 * 6.50005 * 4 2 1 8 8 O 1.21285 * 120.00075 * 238.16834 * 7 4 2 9 9 N 1.34777 * 120.00202 * 58.17290 * 7 4 2 10 10 C 1.46936 * 120.55346 * 183.05797 * 9 7 4 11 11 C 1.53340 * 108.68212 * 125.62704 * 10 9 7 12 12 C 1.52113 * 109.44146 * 53.30714 * 11 10 9 13 13 C 1.54384 * 110.50952 * 64.09023 * 12 11 10 14 14 C 1.54450 * 102.87479 * 83.32803 * 13 12 11 15 15 N 1.47089 * 107.29628 * 21.50921 * 14 13 12 16 16 C 1.36928 * 125.62792 * 180.97255 * 15 14 13 17 17 H 1.08000 * 119.99854 * 177.26095 * 16 15 14 18 18 C 1.38814 * 120.00538 * 357.25084 * 16 15 14 19 19 N 1.31614 * 120.00431 * 159.03583 * 18 16 15 20 20 Si 1.86797 * 119.99593 * 339.03717 * 18 16 15 21 21 H 1.48502 * 109.47135 * 185.89832 * 20 18 16 22 22 H 1.48499 * 109.47511 * 305.90027 * 20 18 16 23 23 H 1.48505 * 109.47164 * 65.90124 * 20 18 16 24 24 C 1.47573 * 108.74095 * 1.22772 * 15 14 13 25 25 C 1.52105 * 111.60060 * 300.68939 * 12 11 10 26 26 C 1.46926 * 120.55187 * 3.03869 * 9 7 4 27 27 H 1.07997 * 120.00706 * 5.78129 * 1 2 3 28 28 H 1.07998 * 119.99649 * 185.77808 * 1 2 3 29 29 H 1.08999 * 109.47561 * 239.99975 * 3 2 1 30 30 H 1.08998 * 109.47596 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.47193 * 120.00499 * 3 2 1 32 32 H 1.09002 * 109.47192 * 184.84309 * 5 4 2 33 33 H 1.09003 * 109.46973 * 304.84071 * 5 4 2 34 34 H 1.08997 * 109.46962 * 64.83910 * 5 4 2 35 35 H 1.08998 * 109.46726 * 304.73886 * 6 4 2 36 36 H 1.08995 * 109.47077 * 64.74364 * 6 4 2 37 37 H 1.09002 * 109.46645 * 184.74244 * 6 4 2 38 38 H 1.09001 * 109.59836 * 5.87080 * 10 9 7 39 39 H 1.09003 * 109.73275 * 245.46571 * 10 9 7 40 40 H 1.08999 * 109.47945 * 293.31210 * 11 10 9 41 41 H 1.09007 * 109.47883 * 173.29875 * 11 10 9 42 42 H 1.08998 * 110.73290 * 324.98300 * 13 12 11 43 43 H 1.08999 * 110.73276 * 201.67709 * 13 12 11 44 44 H 1.09000 * 109.88210 * 262.07943 * 14 13 12 45 45 H 1.09004 * 109.88260 * 140.92691 * 14 13 12 46 46 H 0.97003 * 119.99988 * 5.01634 * 19 18 16 47 47 H 1.09001 * 110.37729 * 95.26543 * 24 15 14 48 48 H 1.09005 * 110.37751 * 217.61401 * 24 15 14 49 49 H 1.08999 * 109.47479 * 179.29549 * 25 12 11 50 50 H 1.08997 * 109.47612 * 299.31451 * 25 12 11 51 51 H 1.09007 * 109.60034 * 354.12856 * 26 9 7 52 52 H 1.09003 * 109.60377 * 114.60148 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.8167 -1.4597 1.3222 6 6 3.0617 -1.3170 -1.1602 7 6 1.0922 -2.4458 -0.1619 8 8 1.0339 -3.3164 0.6805 9 7 0.2883 -2.4988 -1.2424 10 6 -0.7094 -3.5687 -1.3793 11 6 -2.0852 -2.9311 -1.6074 12 6 -2.0066 -1.9624 -2.7775 13 6 -1.6765 -2.7170 -4.0833 14 6 -3.0590 -3.2290 -4.5438 15 7 -4.0754 -2.3842 -3.8982 16 6 -5.4309 -2.5233 -4.0330 17 1 -6.0976 -1.8777 -3.4807 18 6 -5.9483 -3.4940 -4.8798 19 7 -7.1844 -3.9164 -4.7192 20 14 -4.8900 -4.2008 -6.2472 21 1 -5.7111 -5.1057 -7.0912 22 1 -4.3558 -3.0948 -7.0817 23 1 -3.7617 -4.9640 -5.6557 24 6 -3.3930 -1.3582 -3.0861 25 6 -0.9873 -0.8618 -2.5258 26 6 0.3948 -1.4874 -2.3028 27 1 -0.5401 0.9305 -0.0942 28 1 -0.5399 -0.9306 0.0942 29 1 2.6901 1.3630 -0.8899 30 1 1.3551 2.1336 0.0005 31 1 2.6901 1.3629 0.8900 32 1 3.4293 -2.3606 1.2883 33 1 3.4562 -0.5911 1.4799 34 1 2.1011 -1.5374 2.1407 35 1 2.5352 -1.1229 -2.0946 36 1 3.8142 -0.5451 -0.9998 37 1 3.5465 -2.2919 -1.2120 38 1 -0.7304 -4.1678 -0.4690 39 1 -0.4549 -4.2028 -2.2286 40 1 -2.3897 -2.3929 -0.7098 41 1 -2.8147 -3.7102 -1.8290 42 1 -1.0020 -3.5505 -3.8873 43 1 -1.2497 -2.0397 -4.8231 44 1 -3.1907 -4.2668 -4.2378 45 1 -3.1426 -3.1466 -5.6275 46 1 -7.7575 -3.4989 -4.0572 47 1 -3.2890 -0.4330 -3.6529 48 1 -3.9423 -1.1785 -2.1619 49 1 -0.9503 -0.1965 -3.3884 50 1 -1.2762 -0.2943 -1.6412 51 1 1.1017 -0.7144 -2.0012 52 1 0.7360 -1.9585 -3.2247 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035214180.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:47 Heat of formation + Delta-G solvation = 29.823502 kcal Electronic energy + Delta-G solvation = -29789.045090 eV Core-core repulsion = 26176.514319 eV Total energy + Delta-G solvation = -3612.530771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39133 -39.17400 -37.00025 -36.05913 -33.13557 -32.33653 -31.28383 -31.14009 -29.04841 -27.99088 -27.45750 -27.14574 -24.19618 -23.62698 -22.92188 -22.48056 -20.72091 -20.18033 -18.73725 -18.15473 -17.23274 -16.50511 -16.15220 -15.83408 -15.34016 -15.19888 -14.53922 -14.39488 -14.29944 -13.70808 -13.66811 -13.60127 -13.33977 -13.16890 -13.04990 -12.86386 -12.68930 -12.46353 -12.42393 -12.23470 -12.10805 -11.75554 -11.69907 -11.46887 -11.38927 -11.21877 -11.13488 -10.96995 -10.90450 -10.36174 -10.30668 -10.17984 -9.89151 -9.60436 -9.46177 -9.11522 -8.91282 -8.58819 -8.51355 -7.02661 -6.29070 -3.14616 1.93484 2.53308 2.93243 3.41953 3.50579 3.71535 4.16737 4.32383 4.62763 4.69549 4.74262 4.75904 4.80189 4.88653 4.99277 5.05105 5.14715 5.21186 5.27640 5.28999 5.34412 5.34780 5.40116 5.47432 5.54641 5.56463 5.59205 5.65254 5.67277 5.72655 5.76432 5.79407 5.84604 5.88977 5.95076 6.01386 6.04472 6.09160 6.28851 6.33849 6.35302 6.37843 6.44417 6.53898 6.57073 6.68534 6.79783 6.82405 7.36356 7.69538 8.10531 8.35894 9.08177 9.61866 10.28273 11.21879 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.003542 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.368289 B = 7903.294510 C = 8084.043094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.133 4.133 3 C -0.113 4.113 4 C -0.044 4.044 5 C -0.123 4.123 6 C -0.152 4.152 7 C 0.526 3.474 8 O -0.543 6.543 9 N -0.603 5.603 10 C 0.109 3.891 11 C -0.111 4.111 12 C -0.069 4.069 13 C -0.123 4.123 14 C 0.112 3.888 15 N -0.611 5.611 16 C -0.324 4.324 17 H 0.077 0.923 18 C -0.025 4.025 19 N -0.927 5.927 20 Si 1.070 2.930 21 H -0.303 1.303 22 H -0.300 1.300 23 H -0.283 1.283 24 C 0.148 3.852 25 C -0.125 4.125 26 C 0.093 3.907 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.025 0.975 46 H 0.261 0.739 47 H 0.021 0.979 48 H 0.042 0.958 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.102 0.898 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.172 9.346 7.757 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.134 4.134 3 C -0.169 4.169 4 C -0.047 4.047 5 C -0.180 4.180 6 C -0.209 4.209 7 C 0.314 3.686 8 O -0.420 6.420 9 N -0.335 5.335 10 C -0.013 4.013 11 C -0.149 4.149 12 C -0.070 4.070 13 C -0.160 4.160 14 C -0.013 4.013 15 N -0.339 5.339 16 C -0.451 4.451 17 H 0.095 0.905 18 C -0.224 4.224 19 N -0.569 5.569 20 Si 0.905 3.095 21 H -0.231 1.231 22 H -0.229 1.229 23 H -0.210 1.210 24 C 0.022 3.978 25 C -0.163 4.163 26 C -0.029 4.029 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.039 0.961 48 H 0.061 0.939 49 H 0.093 0.907 50 H 0.097 0.903 51 H 0.120 0.880 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.042 7.724 6.988 25.286 hybrid contribution -0.252 1.297 0.951 1.628 sum 22.790 9.021 7.939 25.764 Atomic orbital electron populations 1.24139 0.95331 1.03024 0.99173 1.21321 0.94988 0.94262 1.02790 1.20814 1.00254 0.93705 1.02172 1.19798 0.95012 0.91363 0.98528 1.21628 0.99826 1.01769 0.94803 1.22190 0.98550 1.02952 0.97219 1.20408 0.80784 0.86577 0.80862 1.90681 1.69074 1.40178 1.42095 1.48124 1.36042 1.28553 1.20819 1.21751 0.87507 0.89319 1.02702 1.21636 0.96056 0.99639 0.97553 1.21084 0.96037 0.95129 0.94789 1.22654 0.97449 0.99533 0.96397 1.21995 0.88163 0.95659 0.95498 1.44860 1.01853 1.32499 1.54643 1.20102 0.79581 1.19880 1.25555 0.90523 1.25731 0.99271 0.96308 1.01130 1.70926 1.08644 1.38502 1.38845 0.83860 0.73845 0.75586 0.76244 1.23097 1.22932 1.20992 1.21518 0.90029 0.91585 0.94629 1.21946 0.93871 0.97815 1.02702 1.22332 0.98706 0.91536 0.90359 0.87670 0.87447 0.91587 0.91699 0.91460 0.91929 0.91969 0.91829 0.90661 0.91171 0.91880 0.89255 0.91280 0.91955 0.89526 0.91398 0.91665 0.93601 0.95735 0.92926 0.96124 0.93950 0.90730 0.90319 0.87985 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 8.94 29.01 0.26 -1.48 16 2 C -0.13 -1.14 3.30 -101.07 -0.33 -1.47 16 3 C -0.11 -0.70 9.45 36.00 0.34 -0.36 16 4 C -0.04 -0.42 0.61 -156.81 -0.10 -0.51 16 5 C -0.12 -1.14 7.75 37.16 0.29 -0.86 16 6 C -0.15 -1.13 7.67 37.16 0.28 -0.85 16 7 C 0.53 6.76 5.15 -10.99 -0.06 6.71 16 8 O -0.54 -8.95 15.35 5.55 0.09 -8.86 16 9 N -0.60 -7.23 2.01 -172.57 -0.35 -7.57 16 10 C 0.11 1.47 6.11 -3.63 -0.02 1.45 16 11 C -0.11 -1.67 4.87 -27.01 -0.13 -1.80 16 12 C -0.07 -1.03 0.55 -153.98 -0.08 -1.12 16 13 C -0.12 -1.93 4.91 -25.25 -0.12 -2.06 16 14 C 0.11 2.38 4.21 -2.96 -0.01 2.37 16 15 N -0.61 -14.69 3.35 -170.17 -0.57 -15.26 16 16 C -0.32 -9.28 10.53 -15.06 -0.16 -9.44 16 17 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 18 C -0.02 -0.74 5.49 -17.43 -0.10 -0.84 16 19 N -0.93 -29.40 13.70 55.49 0.76 -28.64 16 20 Si 1.07 26.97 24.56 -169.99 -4.17 22.80 16 21 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 22 H -0.30 -7.33 6.90 56.52 0.39 -6.94 16 23 H -0.28 -6.48 5.22 56.52 0.30 -6.18 16 24 C 0.15 2.86 6.16 -2.75 -0.02 2.84 16 25 C -0.13 -1.43 4.36 -27.01 -0.12 -1.54 16 26 C 0.09 0.93 3.79 -3.63 -0.01 0.91 16 27 H 0.11 0.89 7.76 -52.49 -0.41 0.49 16 28 H 0.11 1.30 5.27 -52.49 -0.28 1.02 16 29 H 0.07 0.34 7.41 -51.93 -0.38 -0.04 16 30 H 0.06 0.38 7.79 -51.93 -0.40 -0.03 16 31 H 0.07 0.38 7.41 -51.93 -0.38 0.00 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.44 7.26 -51.93 -0.38 0.06 16 34 H 0.06 0.69 7.99 -51.93 -0.41 0.27 16 35 H 0.07 0.53 4.88 -51.93 -0.25 0.27 16 36 H 0.07 0.40 7.46 -51.93 -0.39 0.01 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 1.31 7.01 -51.93 -0.36 0.94 16 39 H 0.07 0.90 6.56 -51.93 -0.34 0.56 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.53 7.82 -51.93 -0.41 1.13 16 42 H 0.07 0.96 6.18 -51.93 -0.32 0.64 16 43 H 0.06 0.94 7.98 -51.93 -0.41 0.52 16 44 H 0.05 1.04 6.37 -51.93 -0.33 0.71 16 45 H 0.03 0.56 4.36 -51.93 -0.23 0.34 16 46 H 0.26 8.17 8.73 -40.82 -0.36 7.82 16 47 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 48 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 49 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 50 H 0.08 0.88 5.02 -51.93 -0.26 0.62 16 51 H 0.10 0.86 2.93 -51.93 -0.15 0.71 16 52 H 0.07 0.65 7.62 -51.93 -0.40 0.25 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -33.33 362.43 -7.59 -40.92 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.71 Total: -0.80 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.09 Total: -8.05 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.16 Total: -51.47 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 26.97 SS G_CDS: -4.17 Total: 22.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.33 -7.59 -40.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035214180.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.743 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds