Wall clock time and date at job start Tue Mar 31 2020 12:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46684 * 2 1 4 4 C 1.52994 * 109.46879 * 119.99498 * 2 1 3 5 5 C 1.53005 * 115.56520 * 34.31528 * 4 2 1 6 6 C 1.53004 * 117.49891 * 248.62302 * 4 2 1 7 7 C 1.53002 * 117.49519 * 180.02562 * 4 2 1 8 8 H 1.09000 * 117.52032 * 0.02562 * 7 4 2 9 9 C 1.50698 * 117.49662 * 214.97849 * 7 4 2 10 10 O 1.21276 * 120.00767 * 359.97438 * 9 7 4 11 11 N 1.34785 * 119.99901 * 179.97438 * 9 7 4 12 12 C 1.46885 * 120.49854 * 180.02562 * 11 9 7 13 13 C 1.53324 * 108.76719 * 235.63148 * 12 11 9 14 14 C 1.52664 * 109.21280 * 307.56774 * 13 12 11 15 15 C 1.53493 * 113.61149 * 285.94519 * 14 13 12 16 16 N 1.47671 * 85.98912 * 269.03817 * 15 14 13 17 17 C 1.36932 * 134.45909 * 155.68261 * 16 15 14 18 18 H 1.07996 * 120.00367 * 179.97438 * 17 16 15 19 19 C 1.38819 * 120.00007 * 359.97438 * 17 16 15 20 20 N 1.31621 * 120.00004 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00101 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.46743 * 90.00249 * 21 19 17 23 23 H 1.48496 * 109.47134 * 210.00295 * 21 19 17 24 24 H 1.48502 * 109.47039 * 330.00213 * 21 19 17 25 25 C 1.47663 * 91.08041 * 335.67381 * 16 15 14 26 26 C 1.52797 * 113.12964 * 57.40878 * 14 13 12 27 27 C 1.46896 * 120.49545 * 0.02562 * 11 9 7 28 28 H 1.08994 * 109.47658 * 300.00178 * 1 2 3 29 29 H 1.09002 * 109.46964 * 60.00550 * 1 2 3 30 30 H 1.09005 * 109.46810 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47010 * 240.00147 * 2 1 3 32 32 H 1.09002 * 109.46971 * 299.99445 * 3 2 1 33 33 H 1.08997 * 109.47614 * 59.99887 * 3 2 1 34 34 H 1.09003 * 109.47166 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47019 * 205.68519 * 5 4 2 36 36 H 1.09003 * 109.46679 * 325.68788 * 5 4 2 37 37 H 1.09001 * 109.46630 * 85.68295 * 5 4 2 38 38 H 1.08995 * 117.49607 * 145.02553 * 6 4 2 39 39 H 1.08998 * 117.51655 * 359.97438 * 6 4 2 40 40 H 1.08997 * 109.59108 * 115.84361 * 12 11 9 41 41 H 1.09008 * 109.58815 * 355.41355 * 12 11 9 42 42 H 1.09002 * 109.52447 * 67.50585 * 13 12 11 43 43 H 1.09004 * 109.52459 * 187.63209 * 13 12 11 44 44 H 1.09000 * 113.78716 * 23.30500 * 15 14 13 45 45 H 1.09000 * 113.79133 * 154.76620 * 15 14 13 46 46 H 0.96991 * 120.00220 * 179.97438 * 20 19 17 47 47 H 1.09001 * 113.78995 * 270.04975 * 25 16 15 48 48 H 1.09002 * 113.78635 * 138.59201 * 25 16 15 49 49 H 1.08997 * 109.50248 * 182.68256 * 26 14 13 50 50 H 1.08999 * 109.55635 * 62.54533 * 26 14 13 51 51 H 1.09002 * 109.58678 * 244.15220 * 27 11 9 52 52 H 1.08999 * 109.58708 * 4.43994 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.1852 -1.8962 1.7285 6 6 2.7418 0.1229 2.3151 7 6 3.5550 -0.8274 1.4346 8 1 4.1887 -0.3833 0.6669 9 6 4.0913 -2.0817 2.0749 10 8 3.3293 -2.9591 2.4218 11 7 5.4180 -2.2286 2.2620 12 6 5.9527 -3.4468 2.8844 13 6 6.7968 -3.0494 4.1011 14 6 7.8268 -2.0048 3.6785 15 6 8.9875 -2.5830 2.8572 16 7 9.6756 -2.7652 4.1511 17 6 10.6669 -3.5955 4.6015 18 1 11.0043 -3.5279 5.6252 19 6 11.2383 -4.5242 3.7424 20 7 10.8275 -4.6063 2.4946 21 14 12.5902 -5.6573 4.3571 22 1 11.9855 -6.9007 4.8989 23 1 13.4995 -5.9980 3.2336 24 1 13.3602 -4.9741 5.4274 25 6 8.8662 -1.6931 4.7642 26 6 7.1976 -0.7591 3.0563 27 6 6.3508 -1.1726 1.8464 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 1.3351 -2.0421 2.7982 36 1 0.1338 -1.6835 1.5346 37 1 1.4777 -2.8000 1.1939 38 1 2.5946 -0.1590 3.3577 39 1 2.8408 1.1918 2.1264 40 1 6.5751 -3.9811 2.1666 41 1 5.1293 -4.0857 3.2039 42 1 6.1499 -2.6318 4.8726 43 1 7.3091 -3.9287 4.4920 44 1 8.7457 -3.5182 2.3522 45 1 9.4678 -1.8560 2.2023 46 1 11.2270 -5.2549 1.8942 47 1 9.3106 -0.7017 4.6761 48 1 8.5281 -1.9210 5.7751 49 1 7.9840 -0.0765 2.7342 50 1 6.5643 -0.2639 3.7923 51 1 7.0009 -1.5493 1.0567 52 1 5.7899 -0.3133 1.4792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035827978.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:08 Heat of formation + Delta-G solvation = 38.688466 kcal Electronic energy + Delta-G solvation = -28449.107639 eV Core-core repulsion = 24836.961282 eV Total energy + Delta-G solvation = -3612.146357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.68227 -39.37081 -37.84588 -35.62637 -33.34635 -32.46495 -30.94381 -30.45016 -29.35407 -26.95913 -26.42866 -25.08706 -24.51864 -23.47918 -23.21990 -22.34109 -21.06322 -19.30687 -18.29902 -17.65438 -16.96864 -16.70109 -15.71506 -15.55880 -14.98964 -14.74920 -14.69408 -14.51529 -13.98056 -13.81522 -13.66409 -13.40616 -13.28294 -13.06795 -12.76700 -12.57354 -12.36542 -12.13325 -12.07829 -11.88461 -11.80555 -11.60557 -11.57495 -11.23500 -11.10911 -11.00419 -10.88441 -10.86214 -10.71786 -10.35985 -10.19380 -10.11286 -9.81677 -9.70788 -9.46392 -9.36047 -9.25832 -8.77837 -8.29705 -6.84121 -5.74876 -3.06217 2.62396 3.13931 3.39731 3.44739 3.46390 3.69617 4.35108 4.47324 4.49525 4.63747 4.70510 4.82969 4.92506 5.03663 5.06914 5.11710 5.26713 5.34361 5.35159 5.36773 5.44960 5.49753 5.53235 5.62351 5.62891 5.67036 5.74032 5.77131 5.79581 5.85803 5.93558 5.97359 5.99013 5.99875 6.09396 6.10037 6.15318 6.25027 6.32325 6.42066 6.44819 6.49806 6.58068 6.66851 6.87700 6.94051 7.24757 7.39587 7.59583 7.65070 8.01025 8.38454 9.07390 9.73270 10.63874 11.42131 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.030195 B = 0.002686 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.068753 B =10421.940522 C =10666.266847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.152 4.152 4 C -0.086 4.086 5 C -0.107 4.107 6 C -0.150 4.150 7 C -0.185 4.185 8 H 0.121 0.879 9 C 0.542 3.458 10 O -0.545 6.545 11 N -0.600 5.600 12 C 0.114 3.886 13 C -0.094 4.094 14 C -0.109 4.109 15 C 0.175 3.825 16 N -0.610 5.610 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.125 3.875 26 C -0.116 4.116 27 C 0.110 3.890 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.023 0.977 46 H 0.253 0.747 47 H 0.032 0.968 48 H 0.041 0.959 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.072 0.928 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.764 12.427 -4.937 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.209 4.209 4 C -0.087 4.087 5 C -0.164 4.164 6 C -0.188 4.188 7 C -0.206 4.206 8 H 0.139 0.861 9 C 0.330 3.670 10 O -0.423 6.423 11 N -0.333 5.333 12 C -0.008 4.008 13 C -0.132 4.132 14 C -0.111 4.111 15 C 0.050 3.950 16 N -0.336 5.336 17 C -0.348 4.348 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.001 4.001 26 C -0.155 4.155 27 C -0.013 4.013 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.040 0.960 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.059 0.941 49 H 0.091 0.909 50 H 0.078 0.922 51 H 0.090 0.910 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.889 11.680 -4.772 22.715 hybrid contribution 1.340 -0.439 0.228 1.429 sum -17.548 11.241 -4.543 21.330 Atomic orbital electron populations 1.21892 0.94761 1.02101 1.01541 1.20613 0.95924 0.95350 0.96018 1.21990 1.01100 0.95918 1.01857 1.21591 0.91006 0.99040 0.97016 1.21450 0.97184 0.95770 1.01975 1.23280 1.01779 0.97116 0.96577 1.22367 0.95637 0.98181 1.04411 0.86120 1.19632 0.81774 0.87219 0.78350 1.90662 1.56372 1.43269 1.52020 1.48074 1.05565 1.19546 1.60089 1.21658 0.97758 0.85953 0.95390 1.21450 0.95893 0.99642 0.96231 1.22416 0.94868 0.94511 0.99273 1.22237 0.86066 0.97746 0.88987 1.45960 1.42796 1.36652 1.08156 1.19009 1.10589 1.09833 0.95378 0.90456 1.24752 1.00126 0.99823 0.95768 1.69807 1.44738 1.37977 1.04342 0.86160 0.81532 0.80883 0.77427 1.21579 1.21711 1.20795 1.22576 0.89888 0.92129 0.95483 1.21819 0.98786 0.98037 0.96878 1.21779 0.91935 0.90108 0.97491 0.92497 0.92847 0.91965 0.90790 0.92615 0.92135 0.92516 0.91827 0.92783 0.91534 0.88548 0.87479 0.90897 0.89549 0.92812 0.89599 0.91012 0.95971 0.93743 0.95073 0.94122 0.90852 0.92204 0.91015 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.20 37.16 0.30 -0.72 16 2 C -0.06 -0.48 3.15 -90.62 -0.29 -0.77 16 3 C -0.15 -1.00 7.79 37.16 0.29 -0.71 16 4 C -0.09 -0.85 2.47 -154.51 -0.38 -1.23 16 5 C -0.11 -1.21 7.73 37.16 0.29 -0.92 16 6 C -0.15 -1.42 8.91 -26.75 -0.24 -1.65 16 7 C -0.19 -2.02 4.35 -91.79 -0.40 -2.42 16 8 H 0.12 1.14 6.23 -51.93 -0.32 0.81 16 9 C 0.54 7.85 7.46 -10.98 -0.08 7.76 16 10 O -0.54 -9.36 12.50 5.56 0.07 -9.29 16 11 N -0.60 -8.73 2.94 -172.64 -0.51 -9.23 16 12 C 0.11 1.87 6.30 -3.66 -0.02 1.85 16 13 C -0.09 -1.63 5.20 -26.74 -0.14 -1.77 16 14 C -0.11 -1.94 0.78 -154.36 -0.12 -2.06 16 15 C 0.17 3.94 6.32 -3.15 -0.02 3.92 16 16 N -0.61 -15.35 3.53 -179.71 -0.63 -15.99 16 17 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.04 11.39 55.49 0.63 -26.41 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.13 2.52 8.07 -3.15 -0.03 2.50 16 26 C -0.12 -1.62 5.26 -26.65 -0.14 -1.76 16 27 C 0.11 1.39 6.20 -3.64 -0.02 1.37 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.45 6.45 -51.93 -0.33 0.12 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.38 6.98 -51.93 -0.36 0.02 16 34 H 0.06 0.37 7.07 -51.93 -0.37 0.00 16 35 H 0.06 0.82 7.01 -51.93 -0.36 0.46 16 36 H 0.05 0.50 5.59 -51.93 -0.29 0.21 16 37 H 0.07 0.87 7.26 -51.93 -0.38 0.50 16 38 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 39 H 0.11 0.81 5.85 -51.93 -0.30 0.50 16 40 H 0.07 1.28 7.52 -51.93 -0.39 0.89 16 41 H 0.09 1.45 6.98 -51.92 -0.36 1.09 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.72 8.01 -51.93 -0.42 1.31 16 44 H 0.07 1.81 6.47 -51.93 -0.34 1.47 16 45 H 0.02 0.52 8.07 -51.93 -0.42 0.10 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.03 0.61 8.09 -51.93 -0.42 0.19 16 48 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 49 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 52 H 0.08 0.79 5.60 -51.93 -0.29 0.50 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -31.28 386.15 -10.02 -41.30 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -9.12 Total: -0.11 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -1.25 Total: -3.26 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.51 Total: -51.63 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.07 Total: -9.29 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.28 -10.02 -41.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035827978.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.990 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds