Wall clock time and date at job start Tue Mar 31 2020 12:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47504 * 2 1 4 4 C 1.50701 * 109.46670 * 119.99979 * 2 1 3 5 5 O 1.21278 * 119.99891 * 126.73440 * 4 2 1 6 6 N 1.34778 * 120.00296 * 306.73029 * 4 2 1 7 7 C 1.46828 * 120.29686 * 354.79345 * 6 4 2 8 8 C 1.52965 * 107.38911 * 235.03671 * 7 6 4 9 9 C 1.53550 * 109.96066 * 298.41118 * 8 7 6 10 10 H 1.08998 * 110.97477 * 289.23964 * 9 8 7 11 11 C 1.51778 * 112.11839 * 53.07177 * 9 8 7 12 12 H 1.09000 * 104.98662 * 206.70181 * 11 9 8 13 13 C 1.53384 * 105.83471 * 95.18316 * 11 9 8 14 14 C 1.54476 * 102.54071 * 29.49097 * 13 11 9 15 15 N 1.46869 * 106.65168 * 332.25844 * 14 13 11 16 16 C 1.36936 * 125.33427 * 195.40416 * 15 14 13 17 17 H 1.08000 * 120.00027 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99758 * 359.75560 * 16 15 14 19 19 N 1.31617 * 120.00263 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99705 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47020 * 60.00114 * 20 18 16 22 22 H 1.48494 * 109.46744 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46872 * 299.99952 * 20 18 16 24 24 C 1.45645 * 120.30750 * 174.81555 * 6 4 2 25 25 C 1.53000 * 109.46822 * 239.99464 * 2 1 3 26 26 C 1.53774 * 113.61184 * 160.53646 * 25 2 1 27 27 C 1.53956 * 87.01875 * 220.05033 * 26 25 2 28 28 C 1.53773 * 87.11250 * 25.36406 * 27 26 25 29 29 H 1.09003 * 109.46852 * 305.80269 * 1 2 3 30 30 H 1.08999 * 109.46724 * 65.79138 * 1 2 3 31 31 H 1.08999 * 109.47632 * 185.79472 * 1 2 3 32 32 H 1.08999 * 109.47346 * 159.19470 * 3 2 1 33 33 H 1.09000 * 109.46643 * 279.19413 * 3 2 1 34 34 H 1.08993 * 109.47178 * 39.19134 * 3 2 1 35 35 H 1.08991 * 109.87998 * 354.51019 * 7 6 4 36 36 H 1.09005 * 109.87428 * 115.50064 * 7 6 4 37 37 H 1.08998 * 109.38569 * 58.68612 * 8 7 6 38 38 H 1.09002 * 109.39028 * 178.47255 * 8 7 6 39 39 H 1.08995 * 110.79364 * 271.22551 * 13 11 9 40 40 H 1.09005 * 110.79266 * 147.75321 * 13 11 9 41 41 H 1.08998 * 110.01773 * 212.96049 * 14 13 11 42 42 H 1.09001 * 110.05937 * 91.58142 * 14 13 11 43 43 H 0.96997 * 120.00359 * 180.02562 * 19 18 16 44 44 H 1.09000 * 108.43758 * 22.16190 * 24 6 4 45 45 H 1.08992 * 108.31241 * 264.75217 * 24 6 4 46 46 H 1.08995 * 112.85185 * 291.73076 * 25 2 1 47 47 H 1.09004 * 113.61598 * 334.56674 * 26 25 2 48 48 H 1.09006 * 113.61969 * 105.47091 * 26 25 2 49 49 H 1.09002 * 113.53555 * 270.80682 * 27 26 25 50 50 H 1.09005 * 113.66546 * 139.93543 * 27 26 25 51 51 H 1.09004 * 113.61319 * 220.09744 * 28 27 26 52 52 H 1.08991 * 113.61884 * 89.18889 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.8267 -1.6206 1.1235 6 7 1.5988 -0.3343 2.4500 7 6 0.7271 0.8380 2.5972 8 6 1.3964 1.7827 3.5969 9 6 1.5353 1.0902 4.9604 10 1 0.5635 0.9757 5.4406 11 6 2.2296 -0.2549 4.8500 12 1 1.8569 -0.8347 5.6945 13 6 3.7097 0.0121 5.1515 14 6 3.6437 1.2209 6.1111 15 7 2.4135 1.9527 5.7822 16 6 2.1221 3.2306 6.1788 17 1 1.1878 3.6868 5.8867 18 6 3.0251 3.9375 6.9609 19 7 4.1617 3.3797 7.3208 20 14 2.6279 5.6809 7.5014 21 1 1.3810 5.6772 8.3077 22 1 3.7465 6.2120 8.3210 23 1 2.4408 6.5397 6.3044 24 6 1.9910 -1.0867 3.6338 25 6 2.0400 -0.7214 -1.2492 26 6 3.4978 -0.3838 -1.6034 27 6 3.0515 -0.3671 -3.0768 28 6 1.6407 -0.0321 -2.5647 29 1 -0.3633 0.6012 0.8335 30 1 -0.3633 0.4214 -0.9373 31 1 -0.3634 -1.0224 0.1038 32 1 3.0670 1.4647 0.3650 33 1 2.0064 1.8396 -1.0145 34 1 1.4104 2.0505 0.6493 35 1 0.6121 1.3375 1.6353 36 1 -0.2484 0.5296 2.9733 37 1 2.3837 2.0599 3.2276 38 1 0.7877 2.6797 3.7105 39 1 4.2497 0.2701 4.2406 40 1 4.1657 -0.8475 5.6427 41 1 4.5114 1.8635 5.9619 42 1 3.6081 0.8764 7.1446 43 1 4.7925 3.8735 7.8677 44 1 2.9050 -1.6353 3.4064 45 1 1.2045 -1.8073 3.8577 46 1 1.8304 -1.7909 -1.2355 47 1 3.8227 0.5891 -1.2346 48 1 4.2007 -1.1830 -1.3682 49 1 3.1198 -1.3401 -3.5633 50 1 3.5048 0.4328 -3.6623 51 1 0.8464 -0.5480 -3.1042 52 1 1.4569 1.0370 -2.4591 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036781512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:42 Heat of formation + Delta-G solvation = 27.367937 kcal Electronic energy + Delta-G solvation = -29482.998792 eV Core-core repulsion = 25870.361540 eV Total energy + Delta-G solvation = -3612.637252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08759 -39.19889 -37.80081 -35.60052 -34.20481 -32.52772 -31.55459 -29.49273 -28.18208 -27.69239 -26.04003 -25.42462 -25.16440 -23.91677 -22.62390 -21.95208 -20.26555 -19.75939 -18.54435 -17.99640 -16.88606 -16.58993 -16.37101 -15.47728 -15.21880 -14.82357 -14.76947 -14.53212 -14.00676 -13.94860 -13.70713 -13.36873 -13.04966 -12.79687 -12.62085 -12.41831 -12.32505 -12.08876 -11.83084 -11.80731 -11.69602 -11.60277 -11.35369 -11.26941 -11.14646 -10.86751 -10.76705 -10.64698 -10.42500 -10.37966 -10.16175 -10.09317 -10.02691 -9.79665 -9.59038 -9.51645 -9.21930 -8.61543 -8.32934 -6.83637 -5.67848 -3.05440 2.82502 3.19802 3.38921 3.43236 3.44927 4.30591 4.46747 4.49939 4.53515 4.74229 4.76746 4.91105 5.02040 5.06985 5.15907 5.21904 5.31634 5.37744 5.40794 5.42101 5.52153 5.54754 5.61357 5.63416 5.64864 5.70144 5.75229 5.80732 5.87003 5.91948 5.95697 6.01279 6.03407 6.07342 6.12479 6.17371 6.22560 6.29140 6.36247 6.41767 6.46302 6.61477 6.66407 6.84918 6.92817 7.09657 7.55455 7.64444 7.65647 7.86346 8.31519 8.38735 9.22453 9.82810 10.48065 11.39514 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.019190 B = 0.003508 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.755477 B = 7980.283689 C = 8431.394537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.070 4.070 3 C -0.153 4.153 4 C 0.524 3.476 5 O -0.546 6.546 6 N -0.597 5.597 7 C 0.082 3.918 8 C -0.139 4.139 9 C 0.174 3.826 10 H 0.040 0.960 11 C -0.107 4.107 12 H 0.062 0.938 13 C -0.135 4.135 14 C 0.167 3.833 15 N -0.600 5.600 16 C -0.224 4.224 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.135 3.865 25 C -0.080 4.080 26 C -0.134 4.134 27 C -0.144 4.144 28 C -0.138 4.138 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.017 0.983 43 H 0.252 0.748 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 -7.124 -17.203 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.073 4.073 3 C -0.210 4.210 4 C 0.312 3.688 5 O -0.423 6.423 6 N -0.329 5.329 7 C -0.040 4.040 8 C -0.180 4.180 9 C 0.066 3.934 10 H 0.057 0.943 11 C -0.126 4.126 12 H 0.081 0.919 13 C -0.173 4.173 14 C 0.043 3.957 15 N -0.324 5.324 16 C -0.352 4.352 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.012 3.988 25 C -0.099 4.099 26 C -0.171 4.171 27 C -0.181 4.181 28 C -0.175 4.175 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.035 0.965 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.101 0.899 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.490 -7.449 -17.056 19.711 hybrid contribution -0.225 0.896 0.634 1.121 sum -6.714 -6.552 -16.422 18.913 Atomic orbital electron populations 1.22273 0.92905 1.02924 1.03393 1.20650 0.96895 0.96549 0.93189 1.22238 1.02175 0.93645 1.02935 1.20517 0.80635 0.83443 0.84220 1.90645 1.34075 1.31210 1.86386 1.47682 1.49249 1.29960 1.06023 1.22536 0.93183 0.86683 1.01644 1.22512 1.01225 0.97958 0.96257 1.20531 0.93631 0.88647 0.90570 0.94266 1.20728 0.98269 0.97238 0.96407 0.91942 1.22669 0.94081 1.00068 1.00520 1.21374 0.91401 0.89572 0.93391 1.44708 1.16143 1.11826 1.59743 1.18957 1.02110 0.88045 1.26097 0.90594 1.24787 0.96838 0.98572 1.00302 1.69923 1.09437 1.36328 1.41227 0.86210 0.77075 0.84283 0.78257 1.21264 1.21651 1.21199 1.20314 1.00947 0.93330 0.84251 1.22313 0.96545 0.99550 0.91466 1.23001 0.96588 1.02359 0.95189 1.22836 0.96885 1.01504 0.96890 1.23053 0.97041 1.00969 0.96477 0.90372 0.91491 0.92328 0.91761 0.91083 0.90868 0.87829 0.91736 0.91327 0.91337 0.92594 0.92217 0.90015 0.96469 0.93754 0.89814 0.93033 0.89012 0.89859 0.91302 0.90510 0.91683 0.91717 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 7.94 37.16 0.30 -1.14 16 2 C -0.07 -0.78 0.41 -155.66 -0.06 -0.84 16 3 C -0.15 -1.61 6.83 37.16 0.25 -1.36 16 4 C 0.52 7.76 6.33 -10.98 -0.07 7.69 16 5 O -0.55 -9.79 15.19 5.56 0.08 -9.71 16 6 N -0.60 -8.71 2.99 -176.33 -0.53 -9.24 16 7 C 0.08 1.07 4.35 -3.88 -0.02 1.05 16 8 C -0.14 -2.37 5.19 -26.46 -0.14 -2.50 16 9 C 0.17 3.40 3.43 -67.44 -0.23 3.17 16 10 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -1.88 2.45 -92.88 -0.23 -2.10 16 12 H 0.06 1.07 8.04 -51.93 -0.42 0.66 16 13 C -0.13 -2.63 6.37 -25.76 -0.16 -2.79 16 14 C 0.17 4.08 5.53 -3.07 -0.02 4.06 16 15 N -0.60 -14.76 3.04 -163.70 -0.50 -15.26 16 16 C -0.22 -6.01 9.83 -15.06 -0.15 -6.16 16 17 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 19 N -0.92 -26.78 10.22 55.49 0.57 -26.21 16 20 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.13 2.10 5.98 -6.34 -0.04 2.06 16 25 C -0.08 -0.86 2.44 -89.81 -0.22 -1.08 16 26 C -0.13 -1.47 7.04 -25.83 -0.18 -1.66 16 27 C -0.14 -1.26 8.09 -25.83 -0.21 -1.47 16 28 C -0.14 -1.16 6.45 -25.92 -0.17 -1.32 16 29 H 0.08 0.68 4.57 -51.93 -0.24 0.44 16 30 H 0.07 0.50 7.36 -51.93 -0.38 0.12 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.79 7.20 -51.93 -0.37 0.42 16 33 H 0.07 0.62 5.63 -51.93 -0.29 0.33 16 34 H 0.07 0.74 5.48 -51.93 -0.28 0.45 16 35 H 0.10 1.13 2.06 -51.93 -0.11 1.03 16 36 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 2.25 6.43 -51.93 -0.33 1.91 16 42 H 0.02 0.46 8.11 -51.93 -0.42 0.03 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.08 1.40 6.75 -51.93 -0.35 1.05 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 47 H 0.08 0.92 6.01 -51.93 -0.31 0.61 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.08 0.65 6.13 -51.93 -0.32 0.34 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -30.63 372.07 -10.09 -40.73 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.86 Total: 2.09 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.44 Total: -4.74 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.46 Total: -50.71 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.63 -10.09 -40.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036781512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.094 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds