Wall clock time and date at job start Tue Mar 31 2020 12:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99914 * 2 1 4 4 C 1.52999 * 109.47460 * 6.28463 * 3 2 1 5 5 C 1.52999 * 109.47332 * 246.27895 * 3 2 1 6 6 C 1.53003 * 109.46816 * 59.06037 * 5 3 2 7 7 C 1.50702 * 109.46883 * 126.28225 * 3 2 1 8 8 O 1.21283 * 119.99969 * 117.16851 * 7 3 2 9 9 N 1.34776 * 120.00272 * 297.16589 * 7 3 2 10 10 C 1.47077 * 125.63130 * 185.74222 * 9 7 3 11 11 C 1.54456 * 107.29606 * 180.96568 * 10 9 7 12 12 C 1.54385 * 102.87241 * 21.50153 * 11 10 9 13 13 C 1.47574 * 125.62387 * 5.42704 * 9 7 3 14 14 C 1.52103 * 110.51092 * 207.35488 * 12 11 10 15 15 C 1.53342 * 109.44852 * 295.90775 * 14 12 11 16 16 N 1.46928 * 108.68640 * 306.70485 * 15 14 12 17 17 C 1.36940 * 120.55150 * 234.31621 * 16 15 14 18 18 H 1.08002 * 119.99356 * 31.10101 * 17 16 15 19 19 C 1.38812 * 120.00252 * 211.09486 * 17 16 15 20 20 N 1.31616 * 119.99805 * 11.34819 * 19 17 16 21 21 Si 1.86807 * 119.99952 * 191.35356 * 19 17 16 22 22 H 1.48498 * 109.46968 * 59.99941 * 21 19 17 23 23 H 1.48500 * 109.46911 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46779 * 299.99751 * 21 19 17 25 25 C 1.46943 * 118.89693 * 54.34525 * 16 15 14 26 26 C 1.52110 * 110.50654 * 83.33323 * 12 11 10 27 27 H 1.07994 * 120.00089 * 185.10445 * 1 2 3 28 28 H 1.08001 * 120.00084 * 5.09314 * 1 2 3 29 29 H 1.08000 * 119.99658 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46874 * 295.91423 * 4 3 2 31 31 H 1.08996 * 109.46994 * 55.90997 * 4 3 2 32 32 H 1.08997 * 109.47332 * 175.91452 * 4 3 2 33 33 H 1.08998 * 109.47655 * 299.05984 * 5 3 2 34 34 H 1.09005 * 109.47308 * 179.05729 * 5 3 2 35 35 H 1.08991 * 109.47260 * 299.42349 * 6 5 3 36 36 H 1.08999 * 109.47157 * 59.42602 * 6 5 3 37 37 H 1.09000 * 109.46883 * 179.42034 * 6 5 3 38 38 H 1.08997 * 109.87755 * 300.39234 * 10 9 7 39 39 H 1.09005 * 109.87911 * 61.54076 * 10 9 7 40 40 H 1.08997 * 110.73382 * 139.85214 * 11 10 9 41 41 H 1.09007 * 110.73410 * 263.15740 * 11 10 9 42 42 H 1.08999 * 110.37982 * 275.52877 * 13 9 7 43 43 H 1.09005 * 110.37640 * 37.88152 * 13 9 7 44 44 H 1.09001 * 109.47387 * 55.90354 * 14 12 11 45 45 H 1.09001 * 109.47548 * 175.91387 * 14 12 11 46 46 H 1.08999 * 109.60268 * 186.94359 * 15 14 12 47 47 H 1.09004 * 109.60091 * 66.45862 * 15 14 12 48 48 H 0.97008 * 119.99664 * 180.02562 * 20 19 17 49 49 H 1.09004 * 109.59826 * 185.88573 * 25 16 15 50 50 H 1.08997 * 109.73231 * 65.48550 * 25 16 15 51 51 H 1.09000 * 109.47930 * 184.08417 * 26 12 11 52 52 H 1.09006 * 109.47488 * 304.08998 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0768 2.4637 0.1579 5 6 2.8211 1.4567 -1.3206 6 6 1.8291 1.4182 -2.4848 7 6 3.0428 1.3197 1.1454 8 8 4.2334 1.3878 0.9244 9 7 2.5956 1.2571 2.4152 10 6 3.4256 1.3819 3.6230 11 6 2.4900 1.2223 4.8416 12 6 1.2776 0.4726 4.2486 13 6 1.1914 1.0585 2.8232 14 6 0.0161 0.7924 5.0359 15 6 0.1633 0.2701 6.4701 16 7 0.5270 -1.1525 6.4180 17 6 -0.2166 -2.0861 7.0895 18 1 -1.2765 -1.9333 7.2293 19 6 0.3920 -3.2288 7.5902 20 7 1.7049 -3.3155 7.6207 21 14 -0.6525 -4.6435 8.2205 22 1 -1.5161 -5.1485 7.1230 23 1 0.2315 -5.7373 8.6973 24 1 -1.5032 -4.1695 9.3416 25 6 1.7022 -1.5567 5.6340 26 6 1.5459 -1.0240 4.2047 27 1 -0.5400 -0.9315 0.0832 28 1 -0.5400 0.9316 -0.0830 29 1 1.8500 -0.9353 -0.0004 30 1 0.4143 2.4971 -0.7070 31 1 0.4864 2.3174 1.0623 32 1 1.6268 3.4019 0.2308 33 1 3.5359 0.6405 -1.4253 34 1 3.3526 2.4083 -1.3274 35 1 1.3048 0.4627 -2.4841 36 1 1.1081 2.2283 -2.3748 37 1 2.3677 1.5366 -3.4251 38 1 4.1846 0.5997 3.6336 39 1 3.9008 2.3626 3.6465 40 1 2.9683 0.6278 5.6200 41 1 2.1900 2.1964 5.2280 42 1 0.6607 2.0105 2.8330 43 1 0.6974 0.3545 2.1534 44 1 -0.1360 1.8716 5.0559 45 1 -0.8400 0.3135 4.5608 46 1 -0.7818 0.3867 7.0005 47 1 0.9453 0.8288 6.9843 48 1 2.1302 -4.1143 7.9703 49 1 1.7715 -2.6444 5.6135 50 1 2.6045 -1.1412 6.0826 51 1 0.7115 -1.5287 3.7178 52 1 2.4617 -1.2127 3.6443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040831921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:44 Heat of formation + Delta-G solvation = 2.197619 kcal Electronic energy + Delta-G solvation = -29369.308886 eV Core-core repulsion = 25755.580167 eV Total energy + Delta-G solvation = -3613.728719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.83374 -38.98155 -36.89628 -35.82655 -33.05237 -32.05979 -30.92424 -29.97696 -29.87956 -28.78215 -27.04062 -26.09089 -24.02245 -23.16761 -22.25898 -21.71760 -20.93626 -20.05815 -18.37562 -17.99254 -16.99004 -16.57819 -15.95062 -15.67751 -15.32601 -14.88465 -14.71241 -14.13822 -14.04586 -13.69236 -13.55958 -13.44644 -13.12461 -13.10082 -12.85107 -12.62851 -12.29685 -12.23717 -12.21348 -12.03342 -11.68071 -11.49168 -11.39908 -11.27406 -11.01944 -10.97186 -10.73982 -10.67866 -10.67470 -10.50854 -10.20326 -10.16197 -9.92673 -9.82510 -9.56704 -9.46605 -9.12878 -8.48749 -8.44560 -6.61260 -5.78722 -3.26215 2.04157 2.71345 3.09048 3.36926 3.42800 3.43256 4.40527 4.48056 4.52710 4.63750 4.76432 4.80003 5.01557 5.09318 5.14340 5.19424 5.32315 5.35159 5.40194 5.40897 5.42714 5.50191 5.64051 5.67611 5.71480 5.74518 5.77058 5.82421 5.90016 5.94293 5.98102 6.07168 6.08800 6.14856 6.18504 6.26007 6.31076 6.42889 6.44229 6.50853 6.56712 6.63056 6.69518 6.75374 6.86789 6.97272 7.37804 7.64710 7.70112 7.78276 8.23729 8.47632 9.22300 9.84194 10.41901 11.28936 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.020368 B = 0.003422 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.345128 B = 8181.038519 C = 8536.601688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 C -0.046 4.046 4 C -0.153 4.153 5 C -0.094 4.094 6 C -0.153 4.153 7 C 0.540 3.460 8 O -0.547 6.547 9 N -0.606 5.606 10 C 0.109 3.891 11 C -0.124 4.124 12 C -0.055 4.055 13 C 0.095 3.905 14 C -0.118 4.118 15 C 0.147 3.853 16 N -0.591 5.591 17 C -0.253 4.253 18 H 0.063 0.937 19 C 0.004 3.996 20 N -0.905 5.905 21 Si 0.903 3.097 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.173 3.827 26 C -0.124 4.124 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.254 0.746 49 H 0.088 0.912 50 H 0.019 0.981 51 H 0.054 0.946 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.099 11.186 -15.465 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.158 4.158 3 C -0.049 4.049 4 C -0.210 4.210 5 C -0.132 4.132 6 C -0.210 4.210 7 C 0.328 3.672 8 O -0.425 6.425 9 N -0.339 5.339 10 C -0.013 4.013 11 C -0.162 4.162 12 C -0.055 4.055 13 C -0.027 4.027 14 C -0.157 4.157 15 C 0.021 3.979 16 N -0.313 5.313 17 C -0.383 4.383 18 H 0.081 0.919 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.048 3.952 26 C -0.163 4.163 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.037 0.963 48 H 0.064 0.936 49 H 0.106 0.894 50 H 0.037 0.963 51 H 0.073 0.927 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.318 11.082 -15.568 19.155 hybrid contribution -0.456 -0.813 0.421 1.023 sum -1.775 10.270 -15.147 18.386 Atomic orbital electron populations 1.24026 0.95720 1.02683 0.99776 1.22633 0.95945 0.96801 1.00390 1.19867 0.95320 0.95382 0.94345 1.22148 0.98872 0.96735 1.03226 1.21293 0.97415 1.03174 0.91351 1.21874 0.99344 1.02172 0.97642 1.20049 0.88789 0.75938 0.82450 1.90677 1.16898 1.50759 1.84120 1.48488 1.09668 1.70845 1.04901 1.21992 0.94270 1.01086 0.83958 1.22736 0.95950 1.00832 0.96687 1.21038 0.95564 0.96684 0.92264 1.22878 0.82267 1.00222 0.97363 1.21848 0.95983 0.98977 0.98926 1.20907 0.98061 0.86652 0.92308 1.43995 1.31543 1.00494 1.55317 1.19130 0.90562 0.99630 1.28979 0.91945 1.25139 0.95447 1.00151 0.98694 1.69962 1.07515 1.28200 1.49208 0.86364 0.79418 0.82072 0.78824 1.21029 1.21636 1.20894 1.20819 0.88313 1.00714 0.85383 1.21996 0.99991 0.92758 1.01578 0.87826 0.87694 0.86939 0.90892 0.90993 0.92146 0.91095 0.91298 0.92297 0.92500 0.92650 0.91506 0.92117 0.88938 0.91151 0.91813 0.89557 0.93004 0.92133 0.92878 0.96349 0.93570 0.89399 0.96299 0.92684 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 12.03 29.01 0.35 -1.33 16 2 C -0.14 -1.47 5.81 -36.03 -0.21 -1.68 16 3 C -0.05 -0.51 0.51 -156.81 -0.08 -0.59 16 4 C -0.15 -1.40 6.68 37.16 0.25 -1.15 16 5 C -0.09 -1.00 4.28 -26.73 -0.11 -1.12 16 6 C -0.15 -1.25 9.33 37.16 0.35 -0.90 16 7 C 0.54 7.95 6.56 -10.98 -0.07 7.88 16 8 O -0.55 -9.88 16.31 5.56 0.09 -9.79 16 9 N -0.61 -8.59 3.29 -170.62 -0.56 -9.15 16 10 C 0.11 1.59 6.50 -2.96 -0.02 1.57 16 11 C -0.12 -1.82 4.91 -25.24 -0.12 -1.95 16 12 C -0.05 -0.83 0.55 -153.99 -0.08 -0.92 16 13 C 0.10 1.23 4.00 -2.75 -0.01 1.22 16 14 C -0.12 -1.84 4.84 -27.01 -0.13 -1.97 16 15 C 0.15 2.88 6.24 -3.63 -0.02 2.86 16 16 N -0.59 -14.12 2.97 -172.12 -0.51 -14.63 16 17 C -0.25 -6.75 9.57 -15.06 -0.14 -6.89 16 18 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 19 C 0.00 0.12 5.03 -17.43 -0.09 0.03 16 20 N -0.90 -25.76 11.05 55.49 0.61 -25.15 16 21 Si 0.90 21.35 29.57 -169.99 -5.03 16.33 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.17 3.96 4.97 -3.63 -0.02 3.94 16 26 C -0.12 -2.27 4.87 -27.01 -0.13 -2.40 16 27 H 0.10 0.90 8.06 -52.49 -0.42 0.47 16 28 H 0.10 0.82 5.78 -52.49 -0.30 0.52 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.07 0.54 5.48 -51.93 -0.28 0.26 16 31 H 0.07 0.66 4.55 -51.93 -0.24 0.42 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.48 7.17 -51.93 -0.37 0.11 16 36 H 0.06 0.41 6.33 -51.93 -0.33 0.09 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.54 6.18 -51.93 -0.32 1.22 16 41 H 0.07 0.93 7.98 -51.92 -0.41 0.52 16 42 H 0.06 0.74 6.73 -51.93 -0.35 0.39 16 43 H 0.09 1.09 4.43 -51.93 -0.23 0.86 16 44 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 47 H 0.02 0.37 7.62 -51.93 -0.40 -0.03 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.09 2.31 6.05 -51.93 -0.31 2.00 16 50 H 0.02 0.46 6.55 -51.93 -0.34 0.12 16 51 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 52 H 0.05 0.86 7.82 -51.93 -0.41 0.46 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -29.99 377.20 -8.91 -38.91 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -8.90 Total: 1.19 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -0.31 Total: -3.40 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.46 Total: -48.93 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.99 -8.91 -38.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040831921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.106 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds