Wall clock time and date at job start Tue Mar 31 2020 13:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32998 * 120.00444 * 2 1 4 4 C 1.50690 * 120.00063 * 180.02562 * 3 2 1 5 5 C 1.47098 * 119.99634 * 0.02562 * 3 2 1 6 6 O 1.21612 * 119.99987 * 258.64784 * 5 3 2 7 7 N 1.34776 * 120.00024 * 78.64893 * 5 3 2 8 8 C 1.46928 * 120.63135 * 355.13280 * 7 5 3 9 9 C 1.53187 * 108.77850 * 126.36900 * 8 7 5 10 10 C 1.53046 * 109.31089 * 54.63444 * 9 8 7 11 11 C 1.53031 * 109.53991 * 298.63443 * 10 9 8 12 12 H 1.09007 * 109.52868 * 301.40260 * 11 10 9 13 13 C 1.52998 * 109.50166 * 181.31687 * 11 10 9 14 14 C 1.53039 * 109.46209 * 180.16012 * 13 11 10 15 15 C 1.53194 * 109.31114 * 178.62817 * 14 13 11 16 16 N 1.46923 * 108.77646 * 54.63813 * 15 14 13 17 17 C 1.36936 * 120.63417 * 126.36732 * 16 15 14 18 18 H 1.08000 * 119.99594 * 332.81676 * 17 16 15 19 19 C 1.38807 * 120.00015 * 152.81355 * 17 16 15 20 20 N 1.31620 * 120.00508 * 332.58744 * 19 17 16 21 21 Si 1.86806 * 119.99918 * 152.58639 * 19 17 16 22 22 H 1.48496 * 109.47194 * 179.97438 * 21 19 17 23 23 H 1.48506 * 109.46729 * 60.00119 * 21 19 17 24 24 H 1.48501 * 109.47231 * 300.00495 * 21 19 17 25 25 C 1.46929 * 118.73761 * 306.64243 * 16 15 14 26 26 C 1.52764 * 109.00955 * 53.30921 * 25 16 15 27 27 C 1.46926 * 120.63350 * 175.10996 * 7 5 3 28 28 H 1.08996 * 109.47396 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46841 * 300.00049 * 1 2 3 30 30 H 1.09005 * 109.46836 * 59.99360 * 1 2 3 31 31 H 1.07998 * 119.99897 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.47286 * 275.07104 * 4 3 2 33 33 H 1.09000 * 109.47514 * 35.07774 * 4 3 2 34 34 H 1.09002 * 109.47289 * 155.07246 * 4 3 2 35 35 H 1.09007 * 109.58619 * 246.15698 * 8 7 5 36 36 H 1.09004 * 109.58528 * 6.58163 * 8 7 5 37 37 H 1.08996 * 109.49947 * 174.58669 * 9 8 7 38 38 H 1.09004 * 109.49704 * 294.68416 * 9 8 7 39 39 H 1.09000 * 109.45557 * 178.61555 * 10 9 8 40 40 H 1.09003 * 109.45886 * 58.65762 * 10 9 8 41 41 H 1.08998 * 109.45958 * 300.13851 * 13 11 10 42 42 H 1.09000 * 109.49382 * 58.68482 * 14 13 11 43 43 H 1.08994 * 109.52600 * 298.59680 * 14 13 11 44 44 H 1.09004 * 109.58905 * 294.84930 * 15 14 13 45 45 H 1.09001 * 109.58910 * 174.42789 * 15 14 13 46 46 H 0.97001 * 119.99622 * 354.65794 * 20 19 17 47 47 H 1.09004 * 109.58864 * 173.14403 * 25 16 15 48 48 H 1.09004 * 109.58755 * 293.56959 * 25 16 15 49 49 H 1.08992 * 109.56681 * 185.55345 * 26 25 16 50 50 H 1.08998 * 109.35776 * 65.49423 * 26 25 16 51 51 H 1.08998 * 109.58816 * 113.84118 * 27 7 5 52 52 H 1.09001 * 109.58626 * 353.41559 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6790 1.1516 -0.0006 5 6 1.4366 2.4257 0.0006 6 8 1.3117 3.0561 -1.0318 7 7 0.9012 2.8941 1.1452 8 6 0.9510 2.0949 2.3771 9 6 1.5760 2.9422 3.4898 10 6 0.7999 4.2546 3.6230 11 6 0.8897 5.0377 2.3113 12 1 1.9356 5.2340 2.0749 13 6 0.1413 6.3643 2.4561 14 6 0.2282 7.1449 1.1426 15 6 -0.5509 8.4566 1.2804 16 7 -0.0448 9.1866 2.4507 17 6 0.3771 10.4842 2.3348 18 1 0.7580 10.8459 1.3911 19 6 0.3153 11.3346 3.4302 20 7 -0.5845 11.1336 4.3695 21 14 1.5094 12.7642 3.5713 22 1 1.2367 13.5152 4.8230 23 1 1.3392 13.6681 2.4053 24 1 2.9009 12.2463 3.5972 25 6 0.0056 8.4960 3.7465 26 6 0.7734 7.1855 3.5824 27 6 0.2570 4.2140 1.1852 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 2.0470 -0.9353 -0.0004 32 1 4.0427 1.0606 1.0229 33 1 4.0421 0.3108 -0.5915 34 1 4.0422 2.0836 -0.4336 35 1 -0.0591 1.8025 2.6641 36 1 1.5580 1.2049 2.2109 37 1 1.5312 2.3959 4.4319 38 1 2.6155 3.1577 3.2427 39 1 1.2275 4.8488 4.4306 40 1 -0.2448 4.0377 3.8457 41 1 -0.9042 6.1674 2.6931 42 1 -0.2011 6.5497 0.3367 43 1 1.2720 7.3636 0.9173 44 1 -1.6106 8.2399 1.4151 45 1 -0.4106 9.0609 0.3841 46 1 -1.2537 10.4400 4.2596 47 1 0.5131 9.1261 4.4770 48 1 -1.0078 8.2824 4.0865 49 1 0.7321 6.6193 4.5127 50 1 1.8121 7.4039 3.3345 51 1 -0.8097 4.0945 1.3749 52 1 0.4060 4.7224 0.2325 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047232140.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:11 Heat of formation + Delta-G solvation = -22.789615 kcal Electronic energy + Delta-G solvation = -28514.302041 eV Core-core repulsion = 24899.489794 eV Total energy + Delta-G solvation = -3614.812247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.64659 -38.66879 -36.90517 -35.71236 -34.14505 -32.50309 -31.33664 -30.57014 -30.18456 -28.87363 -26.23124 -25.20046 -24.76938 -23.20848 -22.77262 -21.57641 -21.27486 -19.86927 -19.13747 -18.35884 -17.30034 -16.80778 -15.94220 -15.72159 -14.71483 -14.64652 -14.52156 -14.31316 -14.08830 -13.98650 -13.73307 -13.49113 -13.42208 -13.25685 -13.18888 -13.05379 -12.87111 -12.66990 -12.35200 -12.15846 -11.98238 -11.88024 -11.67160 -11.55219 -11.14841 -10.90005 -10.73050 -10.65124 -10.60832 -10.29129 -10.18698 -10.05270 -9.94757 -9.75055 -9.51221 -9.22250 -9.20854 -8.73222 -8.29336 -6.82050 -6.04353 -3.15734 1.42726 2.44484 2.90383 3.52452 3.55633 3.73710 4.21808 4.49825 4.56600 4.64178 4.72723 4.76150 4.84693 4.90168 5.08208 5.10234 5.18252 5.24329 5.26800 5.30854 5.33671 5.39250 5.44286 5.51589 5.55331 5.58217 5.65933 5.67833 5.69920 5.77783 5.89570 5.94187 5.98979 6.03846 6.05589 6.20121 6.22170 6.28333 6.29668 6.39734 6.47997 6.60376 6.63364 6.76251 6.82416 6.91897 7.14517 7.23018 7.26570 8.00182 8.06903 8.62747 9.18220 9.90894 10.36808 11.24988 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.025063 B = 0.002777 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.916652 B =10079.055271 C =10295.245632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C -0.162 4.162 4 C -0.104 4.104 5 C 0.557 3.443 6 O -0.537 6.537 7 N -0.605 5.605 8 C 0.106 3.894 9 C -0.134 4.134 10 C -0.117 4.117 11 C -0.094 4.094 12 H 0.071 0.929 13 C -0.069 4.069 14 C -0.130 4.130 15 C 0.148 3.852 16 N -0.599 5.599 17 C -0.349 4.349 18 H 0.054 0.946 19 C -0.024 4.024 20 N -0.914 5.914 21 Si 1.061 2.939 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.294 1.294 25 C 0.152 3.848 26 C -0.129 4.129 27 C 0.115 3.885 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.014 0.986 45 H 0.053 0.947 46 H 0.268 0.732 47 H 0.076 0.924 48 H 0.013 0.987 49 H 0.052 0.948 50 H 0.056 0.944 51 H 0.066 0.934 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.286 -25.352 -2.772 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 C -0.165 4.165 4 C -0.161 4.161 5 C 0.346 3.654 6 O -0.414 6.414 7 N -0.337 5.337 8 C -0.017 4.017 9 C -0.173 4.173 10 C -0.155 4.155 11 C -0.113 4.113 12 H 0.090 0.910 13 C -0.088 4.088 14 C -0.169 4.169 15 C 0.022 3.978 16 N -0.323 5.323 17 C -0.478 4.478 18 H 0.072 0.928 19 C -0.226 4.226 20 N -0.554 5.554 21 Si 0.891 3.109 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.221 1.221 25 C 0.026 3.974 26 C -0.168 4.168 27 C -0.007 4.007 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.032 0.968 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.031 0.969 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.084 0.916 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.700 -23.713 -2.357 24.289 hybrid contribution -0.480 -1.336 -1.002 1.738 sum 4.220 -25.049 -3.360 25.623 Atomic orbital electron populations 1.21024 0.92704 1.02895 1.02846 1.23313 0.96348 0.96792 0.97672 1.21509 0.97087 0.93023 1.04861 1.20664 0.89652 1.03406 1.02427 1.18550 0.78202 0.85409 0.83278 1.90819 1.59836 1.59230 1.31561 1.48156 1.57395 1.18879 1.09291 1.21788 1.01329 0.94241 0.84294 1.21933 1.00274 0.96962 0.98094 1.21647 1.00440 0.95346 0.98059 1.21581 1.00611 0.94954 0.94158 0.91049 1.21002 0.98781 0.92395 0.96628 1.22101 1.01352 0.97737 0.95726 1.20880 0.94160 0.91428 0.91358 1.44109 1.74015 1.10271 1.03905 1.19958 1.40095 0.87342 1.00440 0.92786 1.25788 1.00291 1.00906 0.95658 1.70781 1.13601 1.32994 1.38032 0.83585 0.75845 0.75685 0.75812 1.21140 1.22014 1.22121 1.20821 0.96197 0.91114 0.89273 1.22067 1.00396 0.97807 0.96505 1.21809 0.96045 0.81816 1.01011 0.91356 0.91062 0.91143 0.85770 0.90919 0.90970 0.91323 0.91368 0.89710 0.90786 0.91515 0.90826 0.91854 0.91890 0.92970 0.92345 0.96850 0.92868 0.92126 0.90579 0.96887 0.92942 0.92533 0.91589 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.10 36.01 0.33 -0.70 16 2 C -0.12 -0.92 9.14 -36.13 -0.33 -1.25 16 3 C -0.16 -1.56 4.14 -102.85 -0.43 -1.99 16 4 C -0.10 -0.82 10.02 36.00 0.36 -0.46 16 5 C 0.56 7.26 5.91 -12.67 -0.07 7.19 16 6 O -0.54 -9.31 16.54 5.27 0.09 -9.22 16 7 N -0.60 -6.90 2.90 -174.16 -0.51 -7.41 16 8 C 0.11 0.89 4.85 -3.71 -0.02 0.87 16 9 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 10 C -0.12 -1.27 4.86 -26.69 -0.13 -1.40 16 11 C -0.09 -1.23 1.92 -90.50 -0.17 -1.40 16 12 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 13 C -0.07 -1.10 1.74 -90.58 -0.16 -1.26 16 14 C -0.13 -2.33 5.05 -26.61 -0.13 -2.46 16 15 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 16 N -0.60 -15.28 2.85 -172.57 -0.49 -15.77 16 17 C -0.35 -9.97 9.46 -15.06 -0.14 -10.11 16 18 H 0.05 1.56 7.96 -52.49 -0.42 1.14 16 19 C -0.02 -0.70 4.61 -17.43 -0.08 -0.78 16 20 N -0.91 -27.68 12.45 55.49 0.69 -26.99 16 21 Si 1.06 25.63 30.00 -169.99 -5.10 20.53 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.15 3.55 4.72 -3.93 -0.02 3.54 16 26 C -0.13 -2.36 5.03 -26.83 -0.14 -2.50 16 27 C 0.11 1.48 5.17 -3.71 -0.02 1.46 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.53 6.23 -51.93 -0.32 0.21 16 30 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.45 8.11 -51.93 -0.42 0.03 16 34 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.07 0.51 7.83 -51.93 -0.41 0.10 16 36 H 0.08 0.60 5.81 -51.93 -0.30 0.29 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.84 6.33 -51.93 -0.33 0.51 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.84 6.49 -51.93 -0.34 0.50 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 46 H 0.27 8.19 6.92 -40.82 -0.28 7.91 16 47 H 0.08 2.01 6.36 -51.93 -0.33 1.68 16 48 H 0.01 0.31 7.92 -51.93 -0.41 -0.10 16 49 H 0.05 0.85 6.33 -51.93 -0.33 0.52 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.10 1.44 5.62 -51.93 -0.29 1.15 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -33.02 388.02 -10.11 -43.13 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -9.30 Total: -0.73 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.34 Total: -9.38 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.31 Total: -50.17 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.10 Total: 20.53 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.02 -10.11 -43.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047232140.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.337 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds