Wall clock time and date at job start Tue Mar 31 2020 12:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47167 * 2 1 4 4 C 1.50700 * 109.47465 * 120.00237 * 2 1 3 5 5 O 1.21280 * 119.99852 * 119.39972 * 4 2 1 6 6 N 1.34773 * 120.00251 * 299.12276 * 4 2 1 7 7 C 1.45732 * 117.75900 * 355.16928 * 6 4 2 8 8 C 1.53053 * 109.56301 * 141.07895 * 7 6 4 9 9 C 1.52942 * 108.49117 * 53.80092 * 8 7 6 10 10 C 1.52934 * 109.78967 * 294.00966 * 9 8 7 11 11 H 1.08996 * 110.51546 * 292.89820 * 10 9 8 12 12 C 1.44186 * 117.76484 * 174.90062 * 6 4 2 13 13 H 1.08997 * 109.22622 * 333.41462 * 12 6 4 14 14 C 1.54569 * 111.47646 * 93.66649 * 12 6 4 15 15 C 1.54053 * 103.66954 * 153.28656 * 14 12 6 16 16 N 1.46883 * 107.71218 * 342.84783 * 15 14 12 17 17 C 1.36934 * 125.58809 * 177.00728 * 16 15 14 18 18 H 1.07999 * 120.00568 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99894 * 0.02562 * 17 16 15 20 20 N 1.31623 * 119.99869 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99940 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47032 * 60.00556 * 21 19 17 23 23 H 1.48504 * 109.46979 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47533 * 300.00101 * 21 19 17 25 25 C 1.53005 * 109.47142 * 240.00466 * 2 1 3 26 26 C 1.53773 * 113.61871 * 163.51474 * 25 2 1 27 27 C 1.53773 * 87.08283 * 220.01860 * 26 25 2 28 28 C 1.53775 * 113.61552 * 66.01432 * 25 2 1 29 29 H 1.09004 * 109.46740 * 275.79737 * 1 2 3 30 30 H 1.09003 * 109.47405 * 35.79738 * 1 2 3 31 31 H 1.09000 * 109.47014 * 155.80345 * 1 2 3 32 32 H 1.09002 * 109.46884 * 171.74991 * 3 2 1 33 33 H 1.08997 * 109.47279 * 291.74649 * 3 2 1 34 34 H 1.09000 * 109.47021 * 51.75334 * 3 2 1 35 35 H 1.08999 * 109.45760 * 261.10672 * 7 6 4 36 36 H 1.09004 * 109.45767 * 21.06839 * 7 6 4 37 37 H 1.08993 * 109.63770 * 173.50297 * 8 7 6 38 38 H 1.09000 * 109.63175 * 293.90017 * 8 7 6 39 39 H 1.08999 * 109.42051 * 54.10816 * 9 8 7 40 40 H 1.09001 * 109.41869 * 173.98025 * 9 8 7 41 41 H 1.08995 * 110.62729 * 34.73523 * 14 12 6 42 42 H 1.09003 * 110.70999 * 271.87713 * 14 12 6 43 43 H 1.09000 * 109.81036 * 223.29058 * 15 14 12 44 44 H 1.09009 * 109.86754 * 102.42605 * 15 14 12 45 45 H 0.96999 * 120.00384 * 179.97438 * 20 19 17 46 46 H 1.09003 * 112.84535 * 294.82282 * 25 2 1 47 47 H 1.09003 * 113.61210 * 334.56933 * 26 25 2 48 48 H 1.09003 * 113.61240 * 105.46683 * 26 25 2 49 49 H 1.09001 * 113.61306 * 270.88164 * 27 26 25 50 50 H 1.08998 * 113.61852 * 139.98443 * 27 26 25 51 51 H 1.09003 * 113.61490 * 254.53585 * 28 25 2 52 52 H 1.09001 * 113.61535 * 25.35280 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7206 -1.7028 1.1191 6 7 1.7215 -0.2399 2.4545 7 6 0.9886 1.0173 2.5324 8 6 -0.0477 0.9376 3.6559 9 6 0.6650 0.5259 4.9449 10 6 1.2026 -0.8992 4.8068 11 1 0.3811 -1.6128 4.7431 12 6 2.1317 -1.0177 3.5972 13 1 2.2125 -2.0654 3.3079 14 6 3.4985 -0.5449 4.1424 15 6 3.4511 -0.9353 5.6319 16 7 2.0470 -1.1841 5.9842 17 6 1.5951 -1.6108 7.2043 18 1 0.5385 -1.7657 7.3649 19 6 2.4953 -1.8441 8.2350 20 7 3.7831 -1.6548 8.0395 21 14 1.8788 -2.4255 9.8997 22 1 1.1718 -3.7216 9.7407 23 1 3.0305 -2.5991 10.8210 24 1 0.9441 -1.4173 10.4612 25 6 2.0400 -0.7212 -1.2493 26 6 3.5191 -0.4402 -1.5622 27 6 3.1128 -0.3801 -3.0441 28 6 1.7053 0.0079 -2.5612 29 1 -0.3633 0.1038 1.0225 30 1 -0.3634 0.8335 -0.6011 31 1 -0.3633 -0.9374 -0.4212 32 1 3.1200 1.4460 0.1475 33 1 1.8021 1.9120 -0.9545 34 1 1.5613 1.9971 0.8071 35 1 1.6842 1.8311 2.7372 36 1 0.4827 1.2020 1.5846 37 1 -0.5163 1.9122 3.7918 38 1 -0.8073 0.1983 3.4017 39 1 1.4931 1.2087 5.1351 40 1 -0.0378 0.5680 5.7769 41 1 3.6033 0.5345 4.0326 42 1 4.3147 -1.0612 3.6369 43 1 3.8460 -0.1213 6.2399 44 1 4.0390 -1.8383 5.7971 45 1 4.4121 -1.8175 8.7598 46 1 1.7835 -1.7805 -1.2608 47 1 3.8755 0.5116 -1.1682 48 1 4.1814 -1.2726 -1.3245 49 1 3.1510 -1.3465 -3.5468 50 1 3.6157 0.4090 -3.6031 51 1 0.9033 -0.4627 -3.1300 52 1 1.5644 1.0820 -2.4402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049617321.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:02 Heat of formation + Delta-G solvation = 29.568286 kcal Electronic energy + Delta-G solvation = -29623.450425 eV Core-core repulsion = 26010.908587 eV Total energy + Delta-G solvation = -3612.541838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.25932 -39.24777 -37.51453 -35.80405 -33.98994 -32.52183 -31.95979 -28.95045 -28.35279 -27.72799 -26.02893 -25.44635 -24.86021 -24.30416 -22.37309 -21.93499 -20.30417 -19.85096 -18.56708 -18.12473 -16.89640 -16.59745 -16.27217 -15.32526 -15.11083 -15.03258 -14.72450 -14.26290 -14.14774 -14.03360 -13.75369 -13.35305 -13.13877 -12.76854 -12.72812 -12.34366 -12.28469 -12.02806 -11.91836 -11.81298 -11.74333 -11.49759 -11.33025 -11.26684 -10.93209 -10.87477 -10.69341 -10.60485 -10.48912 -10.38427 -10.32729 -10.12320 -10.10038 -9.94518 -9.62471 -9.54297 -9.18141 -8.57871 -8.21260 -6.84426 -5.69350 -3.04155 2.86405 3.24350 3.41334 3.45615 3.46886 4.30065 4.47884 4.50125 4.50913 4.72621 4.75431 4.91834 4.95335 5.07761 5.11303 5.17132 5.27666 5.33848 5.42027 5.47436 5.52664 5.56794 5.58455 5.60645 5.67122 5.68461 5.71843 5.73825 5.81682 5.86001 5.93361 5.94332 6.02106 6.03811 6.11260 6.16220 6.20899 6.27446 6.32949 6.42352 6.46449 6.61885 6.63714 6.78723 7.03529 7.15475 7.58614 7.63317 7.70691 7.85582 8.27007 8.47479 9.22699 9.82611 10.47989 11.41321 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.027226 B = 0.003346 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.199876 B = 8365.768386 C = 8872.918749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.071 4.071 3 C -0.163 4.163 4 C 0.514 3.486 5 O -0.536 6.536 6 N -0.585 5.585 7 C 0.086 3.914 8 C -0.134 4.134 9 C -0.130 4.130 10 C 0.162 3.838 11 H 0.053 0.947 12 C 0.138 3.862 13 H 0.088 0.912 14 C -0.149 4.149 15 C 0.179 3.821 16 N -0.596 5.596 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C -0.080 4.080 26 C -0.136 4.136 27 C -0.143 4.143 28 C -0.138 4.138 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.253 0.747 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 8.403 -20.141 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.075 4.075 3 C -0.220 4.220 4 C 0.302 3.698 5 O -0.412 6.412 6 N -0.316 5.316 7 C -0.036 4.036 8 C -0.173 4.173 9 C -0.170 4.170 10 C 0.053 3.947 11 H 0.071 0.929 12 C 0.034 3.966 13 H 0.107 0.893 14 C -0.189 4.189 15 C 0.054 3.946 16 N -0.320 5.320 17 C -0.356 4.356 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.743 3.257 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.099 4.099 26 C -0.173 4.173 27 C -0.181 4.181 28 C -0.175 4.175 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.760 7.799 -19.906 22.141 hybrid contribution -0.208 -0.227 1.097 1.139 sum -5.968 7.572 -18.809 21.136 Atomic orbital electron populations 1.22138 0.92866 1.02924 1.03177 1.20664 0.96834 0.96443 0.93514 1.22480 1.02213 0.94055 1.03255 1.20607 0.80190 0.84566 0.84465 1.90670 1.37551 1.26536 1.86483 1.47008 1.55874 1.22945 1.05796 1.22242 0.94626 0.85953 1.00826 1.21882 0.97694 1.01539 0.96187 1.22111 0.99909 0.99439 0.95551 1.20836 0.92813 0.94114 0.86940 0.92930 1.21093 0.94912 0.95459 0.85144 0.89350 1.23057 0.96372 0.99887 0.99538 1.21052 0.86123 0.99948 0.87457 1.44503 1.01529 1.78414 1.07541 1.18965 0.92406 1.37881 0.86373 0.90503 1.24804 0.95454 1.01740 0.98284 1.69968 1.00444 1.54485 1.31825 0.86200 0.77311 0.78602 0.83628 1.21161 1.21626 1.21219 1.22340 0.96463 0.99548 0.91547 1.22984 0.96618 1.02359 0.95319 1.22794 0.96969 1.01424 0.96866 1.23056 0.97141 1.00708 0.96628 0.90715 0.91409 0.91878 0.91803 0.91257 0.90504 0.92118 0.87835 0.91240 0.91773 0.92024 0.91969 0.92780 0.92035 0.94286 0.93035 0.93694 0.88806 0.89970 0.91252 0.90457 0.91766 0.91752 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 7.67 37.16 0.28 -1.09 16 2 C -0.07 -0.77 0.40 -155.66 -0.06 -0.83 16 3 C -0.16 -1.46 6.91 37.16 0.26 -1.20 16 4 C 0.51 7.86 6.29 -10.99 -0.07 7.80 16 5 O -0.54 -10.25 15.07 5.56 0.08 -10.17 16 6 N -0.58 -8.97 2.75 -167.41 -0.46 -9.43 16 7 C 0.09 1.03 3.67 -4.43 -0.02 1.01 16 8 C -0.13 -1.70 6.06 -26.73 -0.16 -1.86 16 9 C -0.13 -2.27 5.31 -26.79 -0.14 -2.41 16 10 C 0.16 3.31 3.27 -67.33 -0.22 3.09 16 11 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 12 C 0.14 2.66 2.72 -68.34 -0.19 2.47 16 13 H 0.09 1.91 7.16 -51.93 -0.37 1.54 16 14 C -0.15 -3.05 6.46 -25.36 -0.16 -3.21 16 15 C 0.18 4.47 5.39 -3.28 -0.02 4.45 16 16 N -0.60 -15.09 2.94 -163.88 -0.48 -15.57 16 17 C -0.23 -6.30 10.27 -15.06 -0.15 -6.45 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -27.18 10.29 55.49 0.57 -26.61 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.08 -0.86 2.29 -89.81 -0.21 -1.07 16 26 C -0.14 -1.47 7.04 -25.93 -0.18 -1.65 16 27 C -0.14 -1.23 8.08 -25.93 -0.21 -1.44 16 28 C -0.14 -1.12 7.10 -25.92 -0.18 -1.31 16 29 H 0.07 0.70 5.29 -51.93 -0.27 0.43 16 30 H 0.07 0.46 7.92 -51.93 -0.41 0.05 16 31 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 32 H 0.06 0.64 6.54 -51.93 -0.34 0.31 16 33 H 0.07 0.49 5.88 -51.93 -0.31 0.19 16 34 H 0.08 0.63 4.49 -51.93 -0.23 0.39 16 35 H 0.06 0.72 7.72 -51.93 -0.40 0.31 16 36 H 0.10 0.97 2.61 -51.93 -0.14 0.83 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 44 H 0.05 1.44 7.25 -51.92 -0.38 1.06 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.09 1.16 8.04 -51.93 -0.42 0.74 16 47 H 0.08 0.86 5.80 -51.93 -0.30 0.56 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.08 0.60 5.94 -51.93 -0.31 0.29 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -31.31 372.07 -10.10 -41.42 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.87 Total: 1.60 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.53 Total: -3.99 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.37 Total: -51.60 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.31 -10.10 -41.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049617321.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.986 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds