Wall clock time and date at job start Tue Mar 31 2020 13:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47151 * 2 1 4 4 C 1.52999 * 109.47151 * 120.00385 * 2 1 3 5 5 C 1.50702 * 109.46775 * 299.99788 * 4 2 1 6 6 O 1.21275 * 120.00098 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99801 * 179.97438 * 5 4 2 8 8 C 1.47659 * 134.46062 * 179.97438 * 7 5 4 9 9 C 1.53503 * 85.98199 * 204.30258 * 8 7 5 10 10 C 1.47673 * 134.45348 * 359.97438 * 7 5 4 11 11 C 1.52666 * 113.57531 * 91.01489 * 9 8 7 12 12 C 1.53339 * 109.10913 * 73.81774 * 11 9 8 13 13 N 1.46875 * 108.76551 * 52.40504 * 12 11 9 14 14 C 1.36933 * 120.46856 * 124.47084 * 13 12 11 15 15 H 1.08002 * 120.00001 * 331.99192 * 14 13 12 16 16 C 1.38814 * 120.00091 * 151.70768 * 14 13 12 17 17 N 1.31617 * 120.00097 * 342.49537 * 16 14 13 18 18 Si 1.86804 * 119.99998 * 162.49061 * 16 14 13 19 19 H 1.48501 * 109.46906 * 90.00157 * 18 16 14 20 20 H 1.48496 * 109.47087 * 210.00382 * 18 16 14 21 21 H 1.48505 * 109.46950 * 330.00233 * 18 16 14 22 22 C 1.46882 * 119.06670 * 304.74505 * 13 12 11 23 23 C 1.52679 * 113.56034 * 222.23710 * 9 8 7 24 24 C 1.53000 * 109.47051 * 240.00400 * 2 1 3 25 25 C 1.53003 * 117.50156 * 128.62108 * 24 2 1 26 26 C 1.52999 * 59.99981 * 252.50702 * 25 24 2 27 27 H 1.08997 * 109.46804 * 299.99687 * 1 2 3 28 28 H 1.08997 * 109.47059 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.46861 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46844 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47283 * 300.00312 * 3 2 1 32 32 H 1.08999 * 109.46317 * 60.00192 * 3 2 1 33 33 H 1.09005 * 109.46936 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.47364 * 59.99742 * 4 2 1 35 35 H 1.09004 * 113.79162 * 90.02987 * 8 7 5 36 36 H 1.09003 * 113.79234 * 318.57104 * 8 7 5 37 37 H 1.08998 * 113.79263 * 41.42527 * 10 7 5 38 38 H 1.09005 * 113.78699 * 269.95933 * 10 7 5 39 39 H 1.08997 * 109.53468 * 313.92408 * 11 9 8 40 40 H 1.09000 * 109.52990 * 193.70053 * 11 9 8 41 41 H 1.08994 * 109.58708 * 292.61505 * 12 11 9 42 42 H 1.09007 * 109.58729 * 172.19117 * 12 11 9 43 43 H 0.96999 * 119.99671 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.58837 * 175.04148 * 22 13 12 45 45 H 1.09005 * 109.59150 * 295.47243 * 22 13 12 46 46 H 1.08997 * 109.53088 * 46.07640 * 23 9 8 47 47 H 1.09001 * 109.52638 * 166.29938 * 23 9 8 48 48 H 1.09004 * 115.55156 * 274.32904 * 24 2 1 49 49 H 1.08993 * 117.49338 * 359.97438 * 25 24 2 50 50 H 1.08994 * 117.49877 * 145.01797 * 25 24 2 51 51 H 1.08992 * 117.50019 * 252.50913 * 26 25 24 52 52 H 1.09000 * 117.49721 * 107.48781 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4796 6 8 0.8402 0.9749 2.3684 7 7 1.8629 -0.4717 3.7038 8 6 1.5604 -0.0434 5.0841 9 6 2.8496 -0.7770 5.4793 10 6 2.6646 -1.6075 4.2020 11 6 4.0901 0.1126 5.4557 12 6 4.0546 1.0556 6.6644 13 7 3.8539 0.2572 7.8808 14 6 4.7374 0.3460 8.9232 15 1 5.7684 0.6081 8.7365 16 6 4.3066 0.1050 10.2206 17 7 3.0214 0.1326 10.5031 18 14 5.5510 -0.2586 11.5656 19 1 5.9727 1.0128 12.2066 20 1 4.9339 -1.1457 12.5841 21 1 6.7355 -0.9320 10.9751 22 6 2.6956 -0.6425 7.9609 23 6 2.7188 -1.5923 6.7635 24 6 2.0401 -0.7212 -1.2493 25 6 3.0742 0.0053 -2.1118 26 6 1.6358 -0.1494 -2.6097 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1301 -0.7209 1.2494 34 1 1.6767 -1.7490 1.2492 35 1 0.6558 -0.4914 5.4953 36 1 1.6063 1.0359 5.2297 37 1 3.5879 -1.7712 3.6464 38 1 2.0883 -2.5206 4.3509 39 1 4.1010 0.6985 4.5367 40 1 4.9847 -0.5082 5.5041 41 1 3.2331 1.7630 6.5519 42 1 4.9984 1.5965 6.7338 43 1 2.7204 -0.0362 11.4097 44 1 2.7445 -1.2198 8.8842 45 1 1.7762 -0.0572 7.9417 46 1 1.7944 -2.1693 6.7362 47 1 3.5691 -2.2681 6.8542 48 1 2.1268 -1.8044 -1.1644 49 1 3.3908 0.9971 -1.7893 50 1 3.8416 -0.6000 -2.5942 51 1 1.4569 -0.8564 -3.4197 52 1 1.0065 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050513598.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:33 Heat of formation + Delta-G solvation = 39.297102 kcal Electronic energy + Delta-G solvation = -28248.250962 eV Core-core repulsion = 24636.130997 eV Total energy + Delta-G solvation = -3612.119965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.78568 -39.59027 -37.82303 -35.86240 -33.63694 -32.49894 -30.75230 -29.90164 -28.59824 -27.40837 -26.64286 -25.89142 -24.14211 -23.37600 -22.43250 -22.36112 -20.87535 -19.10739 -18.42868 -18.03281 -17.10203 -16.49335 -15.99351 -15.73576 -15.66297 -14.84752 -14.60554 -14.47835 -14.00509 -13.77134 -13.62811 -13.49446 -13.41300 -13.06693 -12.72417 -12.45809 -12.30011 -11.96804 -11.83327 -11.74098 -11.69047 -11.44217 -11.37454 -11.18345 -11.11817 -11.00832 -10.86138 -10.72368 -10.50645 -10.46749 -10.29249 -10.14419 -10.04833 -9.86169 -9.64757 -9.62616 -9.17052 -8.49327 -8.45227 -6.67320 -5.80539 -3.22763 2.73304 2.94540 3.36165 3.43599 3.45611 3.58661 4.30342 4.48382 4.51009 4.61100 4.67928 4.71913 4.88618 4.97531 5.10170 5.12233 5.22334 5.31122 5.37217 5.39657 5.44372 5.50031 5.54362 5.58038 5.59886 5.65089 5.65260 5.72004 5.82873 5.87835 5.91311 5.94498 5.98343 6.02892 6.06695 6.10254 6.18915 6.26376 6.41505 6.44270 6.47627 6.56334 6.60636 6.66115 6.80475 6.94655 7.31925 7.63123 7.78435 7.89528 8.30661 8.44332 9.20329 9.83793 10.40037 11.27759 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.002497 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.478467 B =11210.557368 C =11397.850068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.014 4.014 3 C -0.156 4.156 4 C -0.123 4.123 5 C 0.533 3.467 6 O -0.539 6.539 7 N -0.640 5.640 8 C 0.118 3.882 9 C -0.074 4.074 10 C 0.101 3.899 11 C -0.107 4.107 12 C 0.147 3.853 13 N -0.590 5.590 14 C -0.253 4.253 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.902 5.902 18 Si 0.900 3.100 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.171 3.829 23 C -0.127 4.127 24 C -0.144 4.144 25 C -0.185 4.185 26 C -0.178 4.178 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.018 0.982 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.089 0.911 45 H 0.018 0.982 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.101 0.899 49 H 0.101 0.899 50 H 0.089 0.911 51 H 0.090 0.910 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -4.939 -21.518 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.163 4.163 5 C 0.324 3.676 6 O -0.418 6.418 7 N -0.375 5.375 8 C -0.004 4.004 9 C -0.075 4.075 10 C -0.022 4.022 11 C -0.146 4.146 12 C 0.020 3.980 13 N -0.313 5.313 14 C -0.382 4.382 15 H 0.082 0.918 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.730 3.270 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.045 3.955 23 C -0.167 4.167 24 C -0.162 4.162 25 C -0.222 4.222 26 C -0.215 4.215 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.036 0.964 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.108 0.892 51 H 0.108 0.892 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.670 -4.348 -21.608 22.202 hybrid contribution 0.591 -0.446 0.622 0.967 sum -2.079 -4.794 -20.986 21.627 Atomic orbital electron populations 1.22072 0.93857 1.01344 1.03406 1.19749 0.96036 0.94950 0.90684 1.22222 1.00144 0.95449 1.03483 1.21658 1.02354 1.00125 0.92172 1.20280 0.79649 0.84548 0.83164 1.90563 1.38652 1.27022 1.85557 1.50180 1.51975 1.30392 1.04952 1.23245 0.97776 1.01327 0.78073 1.21976 0.95543 0.95849 0.94145 1.23455 0.94512 0.90534 0.93652 1.21755 0.95480 0.98153 0.99258 1.20880 0.98721 0.91948 0.86426 1.43998 1.28510 1.44892 1.13873 1.19166 0.90114 1.43713 0.85229 0.91786 1.25036 0.95769 1.01673 0.97142 1.70032 1.12953 1.52406 1.19196 0.86334 0.80844 0.78011 0.81802 1.21428 1.21577 1.20509 1.20675 0.88791 0.90723 0.95321 1.22059 1.00431 0.98662 0.95537 1.22361 1.03722 0.98717 0.91392 1.23150 0.92381 1.02707 1.03960 1.22907 0.98232 1.03287 0.97038 0.89666 0.93122 0.93639 0.93146 0.93153 0.89519 0.89156 0.89376 0.90051 0.90076 0.90460 0.89901 0.93007 0.91787 0.96405 0.92682 0.93637 0.89256 0.96425 0.92856 0.91996 0.88068 0.88044 0.89234 0.89158 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.02 37.16 0.30 -1.35 16 2 C -0.01 -0.14 0.62 -154.50 -0.10 -0.24 16 3 C -0.16 -1.74 6.77 37.16 0.25 -1.49 16 4 C -0.12 -1.29 4.50 -27.88 -0.13 -1.41 16 5 C 0.53 7.41 7.47 -10.98 -0.08 7.33 16 6 O -0.54 -9.03 12.07 5.56 0.07 -8.97 16 7 N -0.64 -8.80 3.44 -180.24 -0.62 -9.42 16 8 C 0.12 1.80 7.62 -3.15 -0.02 1.78 16 9 C -0.07 -1.11 0.77 -154.43 -0.12 -1.23 16 10 C 0.10 1.20 7.74 -3.16 -0.02 1.18 16 11 C -0.11 -1.75 5.21 -26.73 -0.14 -1.89 16 12 C 0.15 2.97 6.38 -3.66 -0.02 2.95 16 13 N -0.59 -14.13 2.97 -172.51 -0.51 -14.64 16 14 C -0.25 -6.73 9.55 -15.06 -0.14 -6.87 16 15 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 16 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 17 N -0.90 -25.56 11.21 55.49 0.62 -24.94 16 18 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 C 0.17 3.81 5.20 -3.91 -0.02 3.79 16 23 C -0.13 -2.15 5.24 -26.97 -0.14 -2.29 16 24 C -0.14 -1.23 5.15 -90.62 -0.47 -1.70 16 25 C -0.19 -1.48 9.57 -26.73 -0.26 -1.73 16 26 C -0.18 -1.41 9.38 -26.73 -0.25 -1.66 16 27 H 0.08 1.16 5.51 -51.93 -0.29 0.87 16 28 H 0.05 0.51 7.29 -51.93 -0.38 0.14 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.52 6.98 -51.93 -0.36 0.16 16 31 H 0.05 0.51 7.07 -51.93 -0.37 0.15 16 32 H 0.09 1.20 5.51 -51.93 -0.29 0.92 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.08 1.38 7.41 -51.93 -0.38 1.00 16 37 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.05 0.80 8.01 -51.93 -0.42 0.38 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.38 7.49 -51.93 -0.39 -0.01 16 42 H 0.05 1.11 7.92 -51.92 -0.41 0.70 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.09 2.27 5.98 -51.93 -0.31 1.96 16 45 H 0.02 0.41 8.08 -51.93 -0.42 0.00 16 46 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 49 H 0.10 0.84 5.85 -51.93 -0.30 0.54 16 50 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.09 0.77 7.07 -51.93 -0.37 0.40 16 LS Contribution 388.57 15.07 5.86 5.86 Total: -1.00 -29.39 388.57 -10.36 -39.75 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -9.29 Total: 1.03 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.45 Total: -4.86 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.51 Total: -49.00 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.07 Total: -8.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.39 -10.36 -39.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050513598.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.051 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds