Wall clock time and date at job start Tue Mar 31 2020 13:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99905 * 2 1 4 4 C 1.52995 * 109.47235 * 359.97438 * 3 2 1 5 5 C 1.53011 * 109.46783 * 240.00016 * 3 2 1 6 6 C 1.52995 * 109.47412 * 120.00192 * 3 2 1 7 7 C 1.50697 * 109.47087 * 180.02562 * 6 3 2 8 8 O 1.21282 * 120.00187 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00029 * 179.97438 * 7 6 3 10 10 C 1.48119 * 127.84127 * 359.97438 * 9 7 6 11 11 C 1.54331 * 104.69230 * 140.28883 * 10 9 7 12 12 H 1.09001 * 112.59821 * 262.02861 * 11 10 9 13 13 C 1.54169 * 109.65500 * 137.80055 * 11 10 9 14 14 C 1.54843 * 104.32556 * 223.42034 * 13 11 10 15 15 C 1.54840 * 102.73500 * 38.18879 * 14 13 11 16 16 C 1.54166 * 104.32903 * 321.81229 * 15 14 13 17 17 C 1.53005 * 111.81953 * 261.25095 * 16 15 14 18 18 N 1.46505 * 109.46904 * 298.97995 * 17 16 15 19 19 C 1.36931 * 119.99788 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 17 22 22 N 1.31617 * 119.99873 * 180.27450 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.27770 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00079 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99901 * 23 21 19 27 27 C 1.50619 * 127.74572 * 180.33828 * 9 7 6 28 28 H 1.07998 * 119.99649 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99800 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00551 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47418 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47419 * 300.00292 * 4 3 2 33 33 H 1.08997 * 109.47018 * 60.00298 * 4 3 2 34 34 H 1.08996 * 109.46627 * 299.99829 * 5 3 2 35 35 H 1.09001 * 109.46871 * 59.99771 * 5 3 2 36 36 H 1.08997 * 109.46567 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.47399 * 59.99789 * 6 3 2 38 38 H 1.08997 * 109.46723 * 299.99630 * 6 3 2 39 39 H 1.09005 * 110.39470 * 21.48933 * 10 9 7 40 40 H 1.08996 * 110.39635 * 259.09154 * 10 9 7 41 41 H 1.08999 * 110.46159 * 104.70976 * 13 11 10 42 42 H 1.08999 * 110.56878 * 342.18935 * 13 11 10 43 43 H 1.08994 * 110.75931 * 279.87537 * 14 13 11 44 44 H 1.09005 * 110.91542 * 156.56829 * 14 13 11 45 45 H 1.08998 * 110.46422 * 203.09931 * 15 14 13 46 46 H 1.08999 * 110.46501 * 80.52011 * 15 14 13 47 47 H 1.09003 * 109.46946 * 178.98754 * 17 16 15 48 48 H 1.08993 * 109.47679 * 58.98297 * 17 16 15 49 49 H 0.97000 * 119.99792 * 0.02562 * 18 17 16 50 50 H 0.97000 * 120.00553 * 180.02562 * 22 21 19 51 51 H 1.09004 * 110.78240 * 101.35943 * 27 9 7 52 52 H 1.09001 * 111.15169 * 338.17597 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2494 6 6 2.9432 1.3862 1.2492 7 6 3.6961 2.6916 1.2494 8 8 3.5445 3.4794 0.3398 9 7 4.5381 2.9838 2.2605 10 6 4.8523 2.1574 3.4488 11 6 6.3701 2.3389 3.6616 12 1 6.9531 1.5205 3.2390 13 6 6.6660 2.5123 5.1646 14 6 7.6942 3.6686 5.2218 15 6 7.1894 4.6292 4.1172 16 6 6.7052 3.6945 2.9908 17 6 7.7547 3.5421 1.8879 18 7 8.0257 4.8507 1.2875 19 6 8.9371 4.9623 0.2717 20 1 9.4559 4.0857 -0.0872 21 6 9.1897 6.2013 -0.3011 22 7 10.0617 6.3078 -1.2811 23 14 8.2919 7.7175 0.3191 24 1 9.0745 8.3421 1.4157 25 1 8.1349 8.6893 -0.7928 26 1 6.9525 7.3263 0.8275 27 6 5.3663 4.2289 2.4401 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.6143 3.4120 -0.0011 32 1 0.4429 2.4101 -0.8908 33 1 0.4424 2.4105 0.8891 34 1 3.6514 0.5576 -1.2492 35 1 2.3165 1.3283 -2.1393 36 1 3.4885 2.3299 -1.2491 37 1 3.6515 0.5578 1.2492 38 1 2.3165 1.3286 2.1391 39 1 4.6184 1.1103 3.2560 40 1 4.3014 2.5167 4.3179 41 1 7.0961 1.5992 5.5762 42 1 5.7586 2.7821 5.7049 43 1 8.6960 3.3066 4.9907 44 1 7.6767 4.1571 6.1961 45 1 8.0021 5.2634 3.7631 46 1 6.3645 5.2371 4.4887 47 1 7.3812 2.8616 1.1226 48 1 8.6740 3.1404 2.3139 49 1 7.5595 5.6379 1.6096 50 1 10.2385 7.1736 -1.6812 51 1 4.9012 4.9024 3.1600 52 1 5.5229 4.7377 1.4889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112373913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:18 Heat of formation + Delta-G solvation = -2.678177 kcal Electronic energy + Delta-G solvation = -28763.300020 eV Core-core repulsion = 25149.359871 eV Total energy + Delta-G solvation = -3613.940149 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63248 -39.38613 -36.95136 -34.90684 -34.41440 -31.78755 -31.37313 -29.97427 -29.74742 -27.97876 -27.26173 -25.67843 -25.57788 -23.47408 -22.45853 -21.88056 -20.33916 -19.07204 -18.67984 -18.17460 -17.69121 -16.85398 -15.95577 -15.73078 -15.40472 -15.08909 -14.81163 -14.49372 -14.29742 -14.02134 -13.77621 -13.54358 -13.25401 -12.99223 -12.96209 -12.68186 -12.42482 -12.08163 -11.98035 -11.76192 -11.72678 -11.54133 -11.31004 -11.15965 -11.06561 -10.96607 -10.90510 -10.83454 -10.71251 -10.62333 -10.56804 -10.41688 -10.26751 -10.01763 -9.54269 -9.53986 -9.31437 -8.86341 -8.57279 -7.19041 -5.73026 -3.08152 2.10504 2.76093 2.99752 3.40250 3.43091 3.48543 4.28958 4.39070 4.60349 4.62865 4.64360 4.66929 4.82313 4.97393 5.08279 5.13261 5.20173 5.24147 5.26233 5.32720 5.42231 5.44918 5.49522 5.53624 5.55346 5.59516 5.65644 5.70416 5.77649 5.80483 5.81373 5.84823 5.94765 6.01884 6.02831 6.07284 6.09775 6.16196 6.24452 6.34289 6.37291 6.41000 6.44633 6.52883 6.59341 6.67249 6.68220 6.75098 7.69991 8.02561 8.32883 8.45807 9.24632 9.97022 10.16599 11.45600 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.004189 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.416633 B = 6682.378680 C = 8323.921286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.020 4.020 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.122 4.122 7 C 0.532 3.468 8 O -0.526 6.526 9 N -0.625 5.625 10 C 0.109 3.891 11 C -0.096 4.096 12 H 0.090 0.910 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.118 4.118 16 C -0.080 4.080 17 C 0.180 3.820 18 N -0.752 5.752 19 C -0.241 4.241 20 H 0.089 0.911 21 C 0.005 3.995 22 N -0.935 5.935 23 Si 0.881 3.119 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.114 3.886 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.026 0.974 48 H 0.030 0.970 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.068 0.932 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.492 -13.088 13.408 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.160 4.160 3 C -0.021 4.021 4 C -0.212 4.212 5 C -0.208 4.208 6 C -0.162 4.162 7 C 0.321 3.679 8 O -0.403 6.403 9 N -0.360 5.360 10 C -0.015 4.015 11 C -0.116 4.116 12 H 0.109 0.891 13 C -0.153 4.153 14 C -0.158 4.158 15 C -0.156 4.156 16 C -0.081 4.081 17 C 0.053 3.947 18 N -0.398 5.398 19 C -0.371 4.371 20 H 0.107 0.893 21 C -0.190 4.190 22 N -0.583 5.583 23 Si 0.711 3.289 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.008 4.008 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.086 0.914 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.496 -12.753 12.632 24.378 hybrid contribution -0.557 0.943 0.386 1.161 sum -17.053 -11.810 13.018 24.490 Atomic orbital electron populations 1.23997 0.96169 1.01960 1.01534 1.22973 0.95914 0.97662 0.99405 1.19386 0.94913 0.93121 0.94632 1.22180 0.98496 0.99879 1.00664 1.22072 0.99156 1.04021 0.95532 1.21666 0.98948 0.95779 0.99791 1.20233 0.78674 0.88466 0.80479 1.90620 1.64178 1.50936 1.34588 1.49676 1.43630 1.20594 1.22094 1.22501 0.95304 0.95621 0.88024 1.22704 0.94912 0.98052 0.95949 0.89141 1.22426 0.99360 0.98856 0.94649 1.22467 0.99030 0.95929 0.98394 1.22514 1.01265 0.97453 0.94355 1.22323 0.95243 0.94377 0.96164 1.20481 0.93825 0.88828 0.91599 1.42713 1.50239 1.03966 1.42919 1.19025 1.14052 0.95470 1.08551 0.89320 1.24645 0.99054 0.97169 0.98149 1.69695 1.37324 1.23921 1.27329 0.86592 0.79790 0.84300 0.78185 1.21084 1.21693 1.20269 1.23066 0.88650 0.86514 1.02539 0.88835 0.87846 0.87542 0.89418 0.92815 0.93437 0.93329 0.93026 0.89131 0.89029 0.89302 0.90644 0.91064 0.91621 0.91530 0.91152 0.91780 0.90104 0.91814 0.95652 0.95212 0.80631 0.93098 0.91373 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 13.70 29.01 0.40 -1.31 16 2 C -0.14 -1.32 8.76 -36.03 -0.32 -1.64 16 3 C -0.02 -0.22 0.74 -155.66 -0.11 -0.34 16 4 C -0.16 -1.82 6.83 37.16 0.25 -1.57 16 5 C -0.15 -1.95 8.16 37.16 0.30 -1.65 16 6 C -0.12 -1.30 3.73 -27.89 -0.10 -1.41 16 7 C 0.53 7.73 7.34 -10.99 -0.08 7.65 16 8 O -0.53 -9.63 11.68 5.56 0.06 -9.56 16 9 N -0.63 -8.51 3.36 -167.31 -0.56 -9.07 16 10 C 0.11 1.07 6.48 -2.45 -0.02 1.05 16 11 C -0.10 -1.05 3.52 -88.30 -0.31 -1.37 16 12 H 0.09 1.00 7.88 -51.93 -0.41 0.60 16 13 C -0.12 -1.03 6.38 -25.15 -0.16 -1.19 16 14 C -0.12 -1.29 6.90 -24.79 -0.17 -1.47 16 15 C -0.12 -1.58 5.68 -25.15 -0.14 -1.72 16 16 C -0.08 -1.16 0.61 -152.19 -0.09 -1.25 16 17 C 0.18 3.46 5.20 -4.04 -0.02 3.44 16 18 N -0.75 -17.88 4.39 -59.90 -0.26 -18.14 16 19 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -29.93 13.97 55.49 0.78 -29.15 16 23 Si 0.88 22.60 27.74 -169.99 -4.72 17.89 16 24 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 26 H -0.28 -6.73 6.51 56.52 0.37 -6.36 16 27 C 0.11 1.77 6.08 -1.04 -0.01 1.76 16 28 H 0.09 0.67 8.06 -52.49 -0.42 0.24 16 29 H 0.10 0.89 5.69 -52.49 -0.30 0.59 16 30 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.09 1.27 5.51 -51.93 -0.29 0.99 16 32 H 0.05 0.59 7.50 -51.93 -0.39 0.20 16 33 H 0.05 0.49 7.50 -51.93 -0.39 0.10 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.46 5.51 -51.93 -0.29 1.18 16 37 H 0.09 0.86 7.95 -51.93 -0.41 0.45 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.59 7.30 -51.93 -0.38 0.22 16 40 H 0.07 0.60 7.26 -51.93 -0.38 0.22 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.53 7.25 -51.93 -0.38 0.15 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 1.29 7.16 -51.93 -0.37 0.92 16 46 H 0.06 0.77 7.19 -51.93 -0.37 0.40 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.36 8.38 4.46 -40.82 -0.18 8.20 16 50 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 51 H 0.07 0.95 7.20 -51.93 -0.37 0.58 16 52 H 0.10 1.89 6.98 -51.93 -0.36 1.52 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -33.18 387.90 -8.78 -41.96 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -9.09 Total: 8.27 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.83 Total: -8.03 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.05 Total: -56.36 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.06 Total: -9.56 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.72 Total: 17.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.18 -8.78 -41.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112373913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.280 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds