Wall clock time and date at job start Tue Mar 31 2020 13:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99905 * 2 1 4 4 C 1.52995 * 109.47235 * 359.97438 * 3 2 1 5 5 C 1.53011 * 109.46783 * 240.00016 * 3 2 1 6 6 C 1.52995 * 109.47412 * 120.00192 * 3 2 1 7 7 C 1.50697 * 109.47087 * 180.02562 * 6 3 2 8 8 O 1.21282 * 120.00187 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00029 * 179.97438 * 7 6 3 10 10 C 1.48119 * 127.84127 * 359.97438 * 9 7 6 11 11 C 1.54331 * 104.69230 * 140.28883 * 10 9 7 12 12 H 1.09001 * 112.59821 * 262.02861 * 11 10 9 13 13 C 1.54169 * 109.65500 * 137.80055 * 11 10 9 14 14 C 1.54843 * 104.32556 * 223.42034 * 13 11 10 15 15 C 1.54840 * 102.73500 * 38.18879 * 14 13 11 16 16 C 1.54166 * 104.32903 * 321.81229 * 15 14 13 17 17 C 1.53005 * 111.81953 * 261.25095 * 16 15 14 18 18 N 1.46505 * 109.46904 * 298.97995 * 17 16 15 19 19 C 1.36931 * 119.99788 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 17 22 22 N 1.31617 * 119.99873 * 180.27450 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.27770 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00079 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99901 * 23 21 19 27 27 C 1.50619 * 127.74572 * 180.33828 * 9 7 6 28 28 H 1.07998 * 119.99649 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99800 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00551 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47418 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47419 * 300.00292 * 4 3 2 33 33 H 1.08997 * 109.47018 * 60.00298 * 4 3 2 34 34 H 1.08996 * 109.46627 * 299.99829 * 5 3 2 35 35 H 1.09001 * 109.46871 * 59.99771 * 5 3 2 36 36 H 1.08997 * 109.46567 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.47399 * 59.99789 * 6 3 2 38 38 H 1.08997 * 109.46723 * 299.99630 * 6 3 2 39 39 H 1.09005 * 110.39470 * 21.48933 * 10 9 7 40 40 H 1.08996 * 110.39635 * 259.09154 * 10 9 7 41 41 H 1.08999 * 110.46159 * 104.70976 * 13 11 10 42 42 H 1.08999 * 110.56878 * 342.18935 * 13 11 10 43 43 H 1.08994 * 110.75931 * 279.87537 * 14 13 11 44 44 H 1.09005 * 110.91542 * 156.56829 * 14 13 11 45 45 H 1.08998 * 110.46422 * 203.09931 * 15 14 13 46 46 H 1.08999 * 110.46501 * 80.52011 * 15 14 13 47 47 H 1.09003 * 109.46946 * 178.98754 * 17 16 15 48 48 H 1.08993 * 109.47679 * 58.98297 * 17 16 15 49 49 H 0.97000 * 119.99792 * 0.02562 * 18 17 16 50 50 H 0.97000 * 120.00553 * 180.02562 * 22 21 19 51 51 H 1.09004 * 110.78240 * 101.35943 * 27 9 7 52 52 H 1.09001 * 111.15169 * 338.17597 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2494 6 6 2.9432 1.3862 1.2492 7 6 3.6961 2.6916 1.2494 8 8 3.5445 3.4794 0.3398 9 7 4.5381 2.9838 2.2605 10 6 4.8523 2.1574 3.4488 11 6 6.3701 2.3389 3.6616 12 1 6.9531 1.5205 3.2390 13 6 6.6660 2.5123 5.1646 14 6 7.6942 3.6686 5.2218 15 6 7.1894 4.6292 4.1172 16 6 6.7052 3.6945 2.9908 17 6 7.7547 3.5421 1.8879 18 7 8.0257 4.8507 1.2875 19 6 8.9371 4.9623 0.2717 20 1 9.4559 4.0857 -0.0872 21 6 9.1897 6.2013 -0.3011 22 7 10.0617 6.3078 -1.2811 23 14 8.2919 7.7175 0.3191 24 1 9.0745 8.3421 1.4157 25 1 8.1349 8.6893 -0.7928 26 1 6.9525 7.3263 0.8275 27 6 5.3663 4.2289 2.4401 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.6143 3.4120 -0.0011 32 1 0.4429 2.4101 -0.8908 33 1 0.4424 2.4105 0.8891 34 1 3.6514 0.5576 -1.2492 35 1 2.3165 1.3283 -2.1393 36 1 3.4885 2.3299 -1.2491 37 1 3.6515 0.5578 1.2492 38 1 2.3165 1.3286 2.1391 39 1 4.6184 1.1103 3.2560 40 1 4.3014 2.5167 4.3179 41 1 7.0961 1.5992 5.5762 42 1 5.7586 2.7821 5.7049 43 1 8.6960 3.3066 4.9907 44 1 7.6767 4.1571 6.1961 45 1 8.0021 5.2634 3.7631 46 1 6.3645 5.2371 4.4887 47 1 7.3812 2.8616 1.1226 48 1 8.6740 3.1404 2.3139 49 1 7.5595 5.6379 1.6096 50 1 10.2385 7.1736 -1.6812 51 1 4.9012 4.9024 3.1600 52 1 5.5229 4.7377 1.4889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112373913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:17 Heat of formation + Delta-G solvation = -22.850332 kcal Electronic energy + Delta-G solvation = -28764.174751 eV Core-core repulsion = 25149.359871 eV Total energy + Delta-G solvation = -3614.814880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68553 -40.41993 -37.90010 -36.61711 -35.59806 -33.70950 -32.24440 -31.35605 -30.73237 -29.10886 -28.22179 -27.17278 -26.51464 -24.94708 -23.71214 -23.00223 -21.34102 -20.26976 -20.07591 -19.31725 -18.95024 -17.96875 -16.98358 -16.73820 -16.60389 -16.38456 -16.10793 -15.89164 -15.48058 -15.24113 -14.94083 -14.76742 -14.49418 -14.42775 -14.08910 -13.88938 -13.64759 -13.46644 -13.17323 -12.98665 -12.91247 -12.73564 -12.65297 -12.28922 -12.27180 -12.05268 -11.99801 -11.92187 -11.81993 -11.81502 -11.69973 -11.51793 -11.43886 -11.39514 -11.38020 -11.02344 -10.42632 -10.22257 -9.65169 -9.33559 -8.08220 -5.40611 1.29794 1.34687 1.40777 1.42682 1.69918 2.00164 2.42274 3.22243 3.27917 3.44261 3.61671 3.68218 3.82186 3.90442 3.96906 4.13159 4.17311 4.23627 4.32120 4.37005 4.43138 4.46410 4.47202 4.54546 4.60614 4.69729 4.72326 4.76853 4.80541 4.86779 4.88926 4.96354 4.97957 5.02037 5.03501 5.06753 5.11538 5.18010 5.19794 5.23729 5.30646 5.41969 5.43599 5.45639 5.57071 5.58691 5.69740 5.78643 5.97546 6.16027 6.68114 7.02566 7.26870 7.78859 7.97990 9.13774 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.004189 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.416633 B = 6682.378680 C = 8323.921286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 C -0.019 4.019 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.112 4.112 7 C 0.519 3.481 8 O -0.576 6.576 9 N -0.628 5.628 10 C 0.109 3.891 11 C -0.092 4.092 12 H 0.087 0.913 13 C -0.102 4.102 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.076 4.076 17 C 0.181 3.819 18 N -0.752 5.752 19 C -0.233 4.233 20 H 0.053 0.947 21 C -0.061 4.061 22 N -0.983 5.983 23 Si 0.950 3.050 24 H -0.268 1.268 25 H -0.295 1.295 26 H -0.261 1.261 27 C 0.112 3.888 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.082 0.918 47 H 0.003 0.997 48 H 0.028 0.972 49 H 0.365 0.635 50 H 0.258 0.742 51 H 0.088 0.912 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.177 -14.931 17.272 29.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.167 4.167 3 C -0.020 4.020 4 C -0.208 4.208 5 C -0.206 4.206 6 C -0.152 4.152 7 C 0.311 3.689 8 O -0.456 6.456 9 N -0.362 5.362 10 C -0.012 4.012 11 C -0.112 4.112 12 H 0.106 0.894 13 C -0.140 4.140 14 C -0.155 4.155 15 C -0.157 4.157 16 C -0.077 4.077 17 C 0.054 3.946 18 N -0.398 5.398 19 C -0.364 4.364 20 H 0.071 0.929 21 C -0.253 4.253 22 N -0.634 5.634 23 Si 0.777 3.223 24 H -0.193 1.193 25 H -0.222 1.222 26 H -0.186 1.186 27 C -0.010 4.010 28 H 0.130 0.870 29 H 0.118 0.882 30 H 0.140 0.860 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.100 0.900 47 H 0.021 0.979 48 H 0.046 0.954 49 H 0.199 0.801 50 H 0.067 0.933 51 H 0.106 0.894 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.193 -14.646 16.564 29.279 hybrid contribution 0.320 1.454 -0.904 1.742 sum -18.873 -13.192 15.660 27.847 Atomic orbital electron populations 1.24158 0.95958 1.02750 0.99903 1.22883 0.96102 0.96863 1.00823 1.19353 0.94660 0.94120 0.93848 1.22102 0.98482 0.98680 1.01508 1.22004 0.99430 1.02073 0.97100 1.21698 0.99119 0.93702 1.00635 1.21069 0.78685 0.89377 0.79815 1.90621 1.65809 1.52720 1.36473 1.49822 1.42841 1.20406 1.23129 1.22806 0.94349 0.96826 0.87260 1.22727 0.95925 0.95276 0.97248 0.89445 1.22401 0.99809 0.98899 0.92854 1.22462 0.98860 0.96087 0.98128 1.22518 1.00854 0.97592 0.94763 1.22213 0.93016 0.97530 0.94968 1.20574 0.95389 0.86158 0.92441 1.42698 1.49138 1.06033 1.41932 1.19016 1.13973 0.94297 1.09147 0.92871 1.25464 1.00438 1.00660 0.98734 1.69874 1.39544 1.24699 1.29249 0.85479 0.79286 0.79745 0.77764 1.19331 1.22191 1.18562 1.22938 0.89998 0.87768 1.00319 0.86979 0.88153 0.86049 0.92697 0.92721 0.91770 0.92689 0.92942 0.92992 0.87158 0.86403 0.87792 0.88203 0.89574 0.89124 0.92522 0.89749 0.93349 0.89972 0.97941 0.95373 0.80133 0.93283 0.89386 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 13.70 67.78 0.93 -1.73 16 2 C -0.15 -2.34 8.76 25.64 0.22 -2.12 16 3 C -0.02 -0.41 0.74 -52.93 -0.04 -0.45 16 4 C -0.15 -3.46 6.83 71.98 0.49 -2.97 16 5 C -0.15 -3.94 8.16 71.99 0.59 -3.36 16 6 C -0.11 -2.12 3.73 29.85 0.11 -2.01 16 7 C 0.52 14.88 7.34 87.66 0.64 15.52 16 8 O -0.58 -22.20 11.68 -3.04 -0.04 -22.24 16 9 N -0.63 -16.15 3.36 -801.64 -2.70 -18.84 16 10 C 0.11 1.68 6.48 86.52 0.56 2.24 16 11 C -0.09 -1.72 3.52 -9.29 -0.03 -1.76 16 12 H 0.09 1.72 7.88 -2.39 -0.02 1.70 16 13 C -0.10 -1.34 6.38 31.62 0.20 -1.13 16 14 C -0.12 -2.15 6.90 31.85 0.22 -1.93 16 15 C -0.12 -2.99 5.68 31.62 0.18 -2.81 16 16 C -0.08 -2.14 0.61 -50.68 -0.03 -2.17 16 17 C 0.18 7.20 5.20 86.38 0.45 7.65 16 18 N -0.75 -37.18 4.39 -343.44 -1.51 -38.69 16 19 C -0.23 -14.10 10.47 84.04 0.88 -13.22 16 20 H 0.05 3.52 8.06 -2.91 -0.02 3.49 16 21 C -0.06 -3.81 5.50 84.86 0.47 -3.35 16 22 N -0.98 -65.69 13.97 21.65 0.30 -65.39 16 23 Si 0.95 48.10 27.74 68.60 1.90 50.01 16 24 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 26 H -0.26 -12.34 6.51 99.48 0.65 -11.69 16 27 C 0.11 3.44 6.08 86.02 0.52 3.96 16 28 H 0.11 1.17 8.06 -2.91 -0.02 1.15 16 29 H 0.10 1.46 5.69 -2.91 -0.02 1.44 16 30 H 0.12 1.57 8.06 -2.91 -0.02 1.55 16 31 H 0.05 1.66 5.51 -2.39 -0.01 1.65 16 32 H 0.05 1.19 7.50 -2.39 -0.02 1.17 16 33 H 0.06 1.21 7.50 -2.39 -0.02 1.20 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.80 5.51 -2.39 -0.01 1.79 16 37 H 0.11 1.69 7.95 -2.39 -0.02 1.67 16 38 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.07 7.30 -2.38 -0.02 1.06 16 40 H 0.10 1.06 7.26 -2.39 -0.02 1.05 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 0.83 7.25 -2.39 -0.02 0.81 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.05 1.52 7.16 -2.39 -0.02 1.51 16 46 H 0.08 1.75 7.19 -2.39 -0.02 1.74 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.36 17.36 4.46 -92.71 -0.41 16.95 16 50 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 51 H 0.09 2.31 7.20 -2.38 -0.02 2.30 16 52 H 0.04 1.80 6.98 -2.39 -0.02 1.78 16 Total: -1.00 -79.50 387.90 4.75 -74.76 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.41 Total: 30.02 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 6.37 Total: -9.63 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -3.90 Total: -122.92 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.04 Total: -22.24 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.90 Total: 50.01 kcal Total: -79.50 4.75 -74.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112373913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.906 kcal (2) G-P(sol) polarization free energy of solvation -79.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds