Wall clock time and date at job start Tue Mar 31 2020 12:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 C 1.53001 * 109.47175 * 239.99988 * 2 1 3 5 5 C 1.52999 * 109.47371 * 119.99671 * 2 1 3 6 6 H 1.09001 * 115.55313 * 154.41471 * 5 2 1 7 7 C 1.53005 * 117.49753 * 8.75078 * 5 2 1 8 8 C 1.52999 * 117.52017 * 300.12271 * 5 2 1 9 9 H 1.08999 * 117.49690 * 359.97438 * 8 5 2 10 10 C 1.50706 * 117.49905 * 214.96715 * 8 5 2 11 11 O 1.21283 * 119.99893 * 359.97438 * 10 8 5 12 12 N 1.34776 * 119.99722 * 179.97438 * 10 8 5 13 13 C 1.46501 * 119.99596 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.46931 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.46924 * 180.02562 * 14 13 12 16 16 C 1.29451 * 117.70033 * 94.99932 * 15 14 13 17 17 C 1.50317 * 123.65635 * 180.86184 * 16 15 14 18 18 N 1.47008 * 109.16159 * 349.01533 * 17 16 15 19 19 C 1.36945 * 121.37421 * 222.96942 * 18 17 16 20 20 H 1.07995 * 119.99772 * 155.97460 * 19 18 17 21 21 C 1.38808 * 119.99944 * 335.97672 * 19 18 17 22 22 N 1.31621 * 120.00357 * 344.51353 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 164.51590 * 21 19 18 24 24 H 1.48500 * 109.47316 * 89.99992 * 23 21 19 25 25 H 1.48498 * 109.47265 * 209.99797 * 23 21 19 26 26 H 1.48501 * 109.47218 * 329.99903 * 23 21 19 27 27 C 1.47332 * 117.25100 * 42.95356 * 18 17 16 28 28 C 1.49974 * 117.69106 * 274.73732 * 15 14 13 29 29 H 1.09003 * 109.47072 * 299.99965 * 1 2 3 30 30 H 1.08991 * 109.47256 * 59.99963 * 1 2 3 31 31 H 1.09000 * 109.46754 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47027 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.47194 * 300.00075 * 3 2 1 34 34 H 1.09003 * 109.47227 * 60.00130 * 3 2 1 35 35 H 1.09000 * 109.47163 * 299.99606 * 4 2 1 36 36 H 1.09004 * 109.46763 * 59.99964 * 4 2 1 37 37 H 1.09003 * 109.47146 * 179.97438 * 4 2 1 38 38 H 1.08996 * 117.49849 * 359.97438 * 7 5 2 39 39 H 1.09001 * 117.49825 * 144.96710 * 7 5 2 40 40 H 0.96997 * 120.00153 * 0.02562 * 12 10 8 41 41 H 1.09003 * 109.46822 * 300.00292 * 13 12 10 42 42 H 1.08995 * 109.47174 * 59.99842 * 13 12 10 43 43 H 1.08993 * 109.47007 * 299.99541 * 14 13 12 44 44 H 1.08995 * 109.47461 * 59.99846 * 14 13 12 45 45 H 1.08001 * 118.16977 * 0.87580 * 16 15 14 46 46 H 1.08987 * 109.52797 * 108.92552 * 17 16 15 47 47 H 1.09007 * 109.51828 * 229.11998 * 17 16 15 48 48 H 0.96995 * 120.00120 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.77776 * 57.80510 * 27 18 17 50 50 H 1.09004 * 109.77980 * 178.61209 * 27 18 17 51 51 H 1.09005 * 109.31377 * 281.29290 * 28 15 14 52 52 H 1.08995 * 109.31526 * 40.71957 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.0330 -1.1627 1.1648 7 6 1.0109 -1.4565 2.1101 8 6 1.6337 -0.1515 2.6098 9 1 1.0032 0.7376 2.6152 10 6 2.6371 -0.2437 3.7306 11 8 3.7191 -0.7556 3.5352 12 7 2.3319 0.2427 4.9499 13 6 3.3074 0.1536 6.0392 14 6 2.7152 0.7737 7.3062 15 6 3.7189 0.6826 8.4266 16 6 4.4808 1.7078 8.6369 17 6 5.5384 1.7549 9.7040 18 7 5.3755 0.5980 10.5962 19 6 5.4793 0.7258 11.9557 20 1 4.9962 0.0097 12.6038 21 6 6.2054 1.7759 12.5006 22 7 7.0364 2.4630 11.7458 23 14 6.0033 2.2137 14.3053 24 1 6.9825 1.4441 15.1141 25 1 6.2416 3.6676 14.4916 26 1 4.6253 1.8776 14.7449 27 6 5.0957 -0.7047 9.9674 28 6 3.7607 -0.5873 9.2233 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 -0.0295 -1.4262 1.7867 39 1 1.3267 -2.3821 2.5916 40 1 1.4664 0.6518 5.1062 41 1 3.5489 -0.8929 6.2259 42 1 4.2136 0.6913 5.7604 43 1 2.4734 1.8200 7.1198 44 1 1.8092 0.2356 7.5849 45 1 4.3491 2.5779 8.0107 46 1 6.5246 1.7220 9.2412 47 1 5.4352 2.6754 10.2787 48 1 7.5435 3.1970 12.1265 49 1 5.8922 -0.9546 9.2665 50 1 5.0226 -1.4762 10.7340 51 1 2.9416 -0.5888 9.9425 52 1 3.6484 -1.4383 8.5516 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160656830.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:02 Heat of formation + Delta-G solvation = 2.836820 kcal Electronic energy + Delta-G solvation = -26585.916078 eV Core-core repulsion = 22972.215077 eV Total energy + Delta-G solvation = -3613.701001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.45528 -38.63083 -37.79878 -35.41505 -34.14638 -33.51628 -31.36876 -29.84280 -28.80668 -27.80265 -27.63068 -25.77153 -24.21840 -23.22126 -22.83147 -22.26583 -20.95768 -20.20764 -18.73448 -17.65301 -17.50546 -16.30956 -15.99114 -15.52469 -15.38885 -14.95530 -14.73855 -14.40006 -14.07298 -14.01485 -13.90247 -13.57772 -13.32309 -13.06092 -12.90391 -12.71353 -12.58940 -12.19357 -12.10933 -11.99780 -11.97890 -11.57067 -11.55164 -11.40880 -11.39038 -10.98987 -10.95326 -10.89778 -10.70445 -10.57263 -10.31986 -10.30582 -10.24503 -9.90731 -9.78917 -9.51787 -9.10805 -8.63584 -7.90351 -6.70297 -5.76818 -3.15404 2.38907 2.82272 3.14879 3.38911 3.45510 3.47866 3.54367 4.20893 4.35810 4.45729 4.51358 4.61961 4.73730 4.78989 4.89408 5.12746 5.14781 5.19459 5.24792 5.28583 5.31520 5.34534 5.41542 5.41841 5.55121 5.56132 5.57950 5.63546 5.66745 5.67666 5.79529 5.81811 5.88285 5.99049 6.02967 6.05838 6.08034 6.17599 6.23421 6.38979 6.41688 6.57671 6.81036 6.92930 7.25652 7.34126 7.40722 7.44764 7.76987 7.90432 8.15398 8.41283 9.22674 9.85673 10.44444 11.33597 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.036822 B = 0.001860 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.229575 B =15052.780990 C =15232.227230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.141 4.141 4 C -0.139 4.139 5 C -0.106 4.106 6 H 0.117 0.883 7 C -0.153 4.153 8 C -0.188 4.188 9 H 0.121 0.879 10 C 0.539 3.461 11 O -0.540 6.540 12 N -0.727 5.727 13 C 0.124 3.876 14 C -0.091 4.091 15 C -0.143 4.143 16 C -0.147 4.147 17 C 0.196 3.804 18 N -0.596 5.596 19 C -0.245 4.245 20 H 0.068 0.932 21 C -0.003 4.003 22 N -0.909 5.909 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.143 3.857 28 C -0.091 4.091 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.399 0.601 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.038 0.962 47 H 0.090 0.910 48 H 0.253 0.747 49 H 0.024 0.976 50 H 0.056 0.944 51 H 0.062 0.938 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.785 -3.952 -23.779 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.041 4.041 3 C -0.198 4.198 4 C -0.196 4.196 5 C -0.125 4.125 6 H 0.135 0.865 7 C -0.191 4.191 8 C -0.209 4.209 9 H 0.139 0.861 10 C 0.325 3.675 11 O -0.418 6.418 12 N -0.377 5.377 13 C 0.001 3.999 14 C -0.129 4.129 15 C -0.143 4.143 16 C -0.166 4.166 17 C 0.071 3.929 18 N -0.319 5.319 19 C -0.374 4.374 20 H 0.086 0.914 21 C -0.200 4.200 22 N -0.555 5.555 23 Si 0.734 3.266 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.016 3.984 28 C -0.130 4.130 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.233 0.767 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.056 0.944 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.873 -4.177 -23.820 28.391 hybrid contribution -0.506 0.682 1.098 1.388 sum -15.379 -3.495 -22.722 27.659 Atomic orbital electron populations 1.22031 0.94599 1.01920 1.01812 1.20114 0.95266 0.95275 0.93432 1.21857 1.01527 0.94813 1.01603 1.21835 1.01289 1.00208 0.96267 1.22451 1.00231 1.01013 0.88779 0.86470 1.23215 0.99308 0.94179 1.02363 1.22275 1.02835 1.00276 0.95536 0.86077 1.19681 0.87302 0.77643 0.82864 1.90712 1.24011 1.44292 1.82744 1.46039 1.19530 1.61688 1.10486 1.21441 0.91630 1.01773 0.85032 1.20903 0.98298 1.00690 0.92991 1.20231 0.99006 0.97418 0.97694 1.23119 0.97735 0.96445 0.99312 1.19703 0.92157 0.92561 0.88437 1.44135 1.83481 1.01676 1.02593 1.19173 1.25393 1.11351 0.81488 0.91437 1.24991 0.96638 1.00618 0.97789 1.70019 1.26874 1.23390 1.35200 0.86263 0.77831 0.77480 0.85020 1.21449 1.21599 1.20588 1.20991 0.92886 0.89330 0.95168 1.20792 1.00676 0.93937 0.97593 0.92543 0.92501 0.92105 0.92334 0.92598 0.92627 0.92446 0.92533 0.92381 0.87254 0.88403 0.76712 0.91345 0.91327 0.91576 0.91486 0.89096 0.94422 0.89157 0.93649 0.95804 0.92564 0.91922 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 7.07 37.16 0.26 -0.50 16 2 C -0.04 -0.27 0.88 -154.51 -0.14 -0.40 16 3 C -0.14 -0.96 8.32 37.16 0.31 -0.65 16 4 C -0.14 -0.84 8.46 37.16 0.31 -0.53 16 5 C -0.11 -0.89 4.66 -90.62 -0.42 -1.31 16 6 H 0.12 1.23 7.64 -51.93 -0.40 0.84 16 7 C -0.15 -1.13 9.27 -26.73 -0.25 -1.38 16 8 C -0.19 -1.61 5.04 -91.77 -0.46 -2.08 16 9 H 0.12 0.81 7.07 -51.93 -0.37 0.44 16 10 C 0.54 6.63 7.61 -10.98 -0.08 6.55 16 11 O -0.54 -9.00 16.26 5.55 0.09 -8.91 16 12 N -0.73 -7.91 5.56 -60.29 -0.33 -8.24 16 13 C 0.12 1.65 5.66 -4.04 -0.02 1.63 16 14 C -0.09 -1.20 5.32 -27.88 -0.15 -1.34 16 15 C -0.14 -2.49 5.11 -100.99 -0.52 -3.01 16 16 C -0.15 -2.88 9.47 -35.78 -0.34 -3.21 16 17 C 0.20 4.79 5.23 -5.10 -0.03 4.77 16 18 N -0.60 -15.27 3.01 -173.57 -0.52 -15.79 16 19 C -0.24 -6.80 9.71 -15.06 -0.15 -6.95 16 20 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 21 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 22 N -0.91 -26.60 11.08 55.49 0.61 -25.98 16 23 Si 0.90 21.89 29.58 -169.99 -5.03 16.86 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.14 3.07 6.59 -3.44 -0.02 3.04 16 28 C -0.09 -1.63 5.95 -28.08 -0.17 -1.80 16 29 H 0.06 0.28 7.07 -51.93 -0.37 -0.09 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.29 6.97 -51.93 -0.36 -0.07 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.38 7.30 -51.93 -0.38 0.00 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.11 0.60 5.85 -51.93 -0.30 0.30 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 3.15 8.47 -40.82 -0.35 2.80 16 41 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.81 7.78 -51.93 -0.40 0.40 16 44 H 0.07 0.80 8.11 -51.93 -0.42 0.37 16 45 H 0.09 1.58 7.73 -52.49 -0.41 1.18 16 46 H 0.04 0.99 8.14 -51.94 -0.42 0.57 16 47 H 0.09 2.43 6.41 -51.92 -0.33 2.10 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 51 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.05 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 406.47 15.07 6.13 6.13 Total: -1.00 -32.05 406.47 -10.54 -42.58 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -9.54 Total: 0.69 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.94 Total: -7.33 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.24 Total: -50.01 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.05 -10.54 -42.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160656830.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.420 kcal (2) G-P(sol) polarization free energy of solvation -32.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds