Wall clock time and date at job start Tue Mar 31 2020 12:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46852 * 2 1 4 4 C 1.53000 * 109.47191 * 119.99895 * 2 1 3 5 5 C 1.53002 * 109.47196 * 175.00370 * 4 2 1 6 6 C 1.52997 * 109.46707 * 180.02562 * 5 4 2 7 7 N 1.46907 * 109.46766 * 179.97438 * 6 5 4 8 8 C 1.52142 * 110.66603 * 54.51122 * 7 6 5 9 9 C 1.54383 * 102.89132 * 159.13916 * 8 7 6 10 10 H 1.09002 * 117.60676 * 116.44194 * 9 8 7 11 11 C 1.53003 * 118.12441 * 271.96225 * 9 8 7 12 12 C 1.53006 * 60.54487 * 93.22041 * 11 9 8 13 13 C 1.50698 * 119.52303 * 111.73566 * 12 11 9 14 14 O 1.21285 * 120.00374 * 289.30385 * 13 12 11 15 15 N 1.34784 * 120.00115 * 109.30859 * 13 12 11 16 16 C 1.47061 * 136.05256 * 359.62219 * 15 13 12 17 17 C 1.53245 * 88.08279 * 207.20580 * 16 15 13 18 18 C 1.50695 * 114.50542 * 220.45911 * 17 16 15 19 19 H 1.08001 * 119.99909 * 93.84811 * 18 17 16 20 20 C 1.37871 * 119.99931 * 273.84377 * 18 17 16 21 21 N 1.31519 * 119.99986 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00128 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46622 * 90.00141 * 22 20 18 24 24 H 1.48502 * 109.47204 * 209.99901 * 22 20 18 25 25 H 1.48493 * 109.47256 * 330.00285 * 22 20 18 26 26 C 1.47063 * 136.05926 * 179.97438 * 15 13 12 27 27 C 1.48565 * 110.99899 * 169.99911 * 7 6 5 28 28 H 1.08995 * 109.47567 * 300.00053 * 1 2 3 29 29 H 1.09004 * 109.46781 * 60.00388 * 1 2 3 30 30 H 1.09001 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47116 * 240.00048 * 2 1 3 32 32 H 1.09000 * 109.47220 * 60.00112 * 3 2 1 33 33 H 1.09002 * 109.47179 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47354 * 299.99858 * 3 2 1 35 35 H 1.08998 * 109.46753 * 55.00098 * 4 2 1 36 36 H 1.08999 * 109.47143 * 295.00573 * 4 2 1 37 37 H 1.08994 * 109.47235 * 59.99755 * 5 4 2 38 38 H 1.08997 * 109.46517 * 299.99982 * 5 4 2 39 39 H 1.08998 * 109.47671 * 60.00572 * 6 5 4 40 40 H 1.08997 * 109.47484 * 299.99227 * 6 5 4 41 41 H 1.08997 * 110.22960 * 41.38615 * 8 7 6 42 42 H 1.09003 * 112.21772 * 277.81960 * 8 7 6 43 43 H 1.09003 * 117.44162 * 200.86270 * 11 9 8 44 44 H 1.08995 * 117.44620 * 345.61626 * 11 9 8 45 45 H 1.08999 * 113.47363 * 321.94147 * 16 15 13 46 46 H 1.09004 * 113.46411 * 92.38282 * 16 15 13 47 47 H 1.08997 * 114.01504 * 87.71799 * 17 16 15 48 48 H 0.96995 * 119.99856 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.46782 * 267.62187 * 26 15 13 50 50 H 1.09003 * 113.46618 * 38.00245 * 26 15 13 51 51 H 1.08999 * 110.40820 * 82.18082 * 27 7 6 52 52 H 1.08994 * 110.40763 * 319.73488 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1880 6 6 4.0747 -1.5527 2.4370 7 7 5.5387 -1.6586 2.3779 8 6 6.1686 -0.2883 2.1775 9 6 7.6156 -0.4985 2.6728 10 1 8.4199 -0.3838 1.9461 11 6 7.9069 -0.2863 4.1597 12 6 7.5689 -1.6895 3.6521 13 6 8.6329 -2.7567 3.6552 14 8 9.5580 -2.6931 2.8734 15 7 8.5565 -3.7819 4.5268 16 6 7.6346 -4.1975 5.5946 17 6 8.8142 -4.9092 6.2655 18 6 8.4778 -6.2526 6.8596 19 1 8.6293 -7.1520 6.2812 20 6 7.9767 -6.3336 8.1414 21 7 7.6835 -7.5061 8.6601 22 14 7.7141 -4.7779 9.1416 23 1 6.3419 -4.2624 8.9039 24 1 7.8853 -5.0825 10.5850 25 1 8.7062 -3.7521 8.7311 26 6 9.3616 -4.9740 4.8327 27 6 6.0908 -2.1344 3.6725 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6054 -1.7198 1.2951 36 1 1.7516 -0.1583 2.1370 37 1 3.9994 0.1676 1.1421 38 1 3.8532 -1.3939 0.3003 39 1 3.6402 -2.5513 2.4824 40 1 3.7864 -0.9902 3.3249 41 1 5.6601 0.4539 2.7930 42 1 6.1655 0.0177 1.1313 43 1 8.9404 -0.0912 4.4463 44 1 7.1504 0.2291 4.7514 45 1 7.2429 -3.3646 6.1785 46 1 6.8541 -4.8778 5.2537 47 1 9.3921 -4.2738 6.9367 48 1 7.3307 -7.5630 9.5618 49 1 9.0455 -5.8630 4.2871 50 1 10.4358 -4.8003 4.7691 51 1 6.0214 -3.2201 3.7393 52 1 5.5646 -1.6670 4.5048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277533721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:22 Heat of formation + Delta-G solvation = 22.030568 kcal Electronic energy + Delta-G solvation = -27382.849039 eV Core-core repulsion = 23769.980341 eV Total energy + Delta-G solvation = -3612.868698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.58140 -39.03848 -37.60327 -36.89266 -34.73027 -32.67039 -31.22881 -30.04843 -28.46928 -27.53680 -26.62365 -25.60835 -25.13070 -23.56627 -22.14251 -21.46041 -20.50530 -20.25740 -19.53087 -18.17034 -17.20059 -16.71400 -16.09033 -15.87408 -15.30424 -15.09965 -14.89382 -14.60550 -14.24452 -14.08083 -13.88616 -13.55028 -13.52316 -13.31290 -12.89075 -12.69411 -12.61559 -12.53673 -12.23001 -12.05268 -11.89761 -11.78369 -11.66126 -11.60306 -11.32470 -11.28851 -10.97458 -10.96113 -10.80053 -10.69623 -10.67546 -10.48721 -10.08803 -10.02290 -9.74725 -9.38560 -9.13338 -8.69773 -8.59992 -8.05191 -6.22589 -4.25516 2.83025 3.17902 3.26784 3.28715 3.34698 3.60034 3.70819 4.28064 4.28755 4.40071 4.51931 4.56921 4.59678 4.75879 4.85838 4.93398 4.97872 5.01327 5.07569 5.17204 5.26242 5.30414 5.32740 5.37741 5.39905 5.45500 5.51421 5.54346 5.58137 5.61767 5.62683 5.73916 5.76563 5.82293 5.85413 5.89366 5.91361 5.95242 6.06085 6.10684 6.11545 6.14283 6.22856 6.31247 6.38978 6.49138 6.57362 6.83545 7.16015 7.52987 8.30220 8.38117 8.64215 8.81020 9.37929 10.89365 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.002776 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.116835 B =10082.937780 C =11159.983294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.114 4.114 5 C -0.119 4.119 6 C 0.041 3.959 7 N -0.507 5.507 8 C 0.060 3.940 9 C -0.131 4.131 10 H 0.125 0.875 11 C -0.123 4.123 12 C -0.162 4.162 13 C 0.582 3.418 14 O -0.557 6.557 15 N -0.638 5.638 16 C 0.087 3.913 17 C -0.013 4.013 18 C -0.510 4.510 19 H 0.081 0.919 20 C 0.077 3.923 21 N -0.892 5.892 22 Si 0.873 3.127 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.262 1.262 26 C 0.115 3.885 27 C 0.075 3.925 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.035 0.965 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.267 0.733 49 H 0.081 0.919 50 H 0.061 0.939 51 H 0.093 0.907 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.705 17.940 -12.693 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.087 4.087 7 N -0.232 5.232 8 C -0.067 4.067 9 C -0.150 4.150 10 H 0.143 0.857 11 C -0.161 4.161 12 C -0.166 4.166 13 C 0.371 3.629 14 O -0.437 6.437 15 N -0.371 5.371 16 C -0.036 4.036 17 C -0.032 4.032 18 C -0.547 4.547 19 H 0.099 0.901 20 C -0.126 4.126 21 N -0.529 5.529 22 Si 0.700 3.300 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.187 1.187 26 C -0.007 4.007 27 C -0.053 4.053 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.072 0.928 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.099 0.901 50 H 0.080 0.920 51 H 0.111 0.889 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.187 17.637 -13.531 24.886 hybrid contribution -0.568 1.168 1.343 1.868 sum -11.755 18.805 -12.188 25.305 Atomic orbital electron populations 1.21847 0.95359 1.01718 1.01616 1.21113 0.95561 0.96384 0.98514 1.21896 1.01266 0.95972 1.01518 1.21623 0.95262 1.00619 0.97719 1.21685 0.95118 1.00615 0.98230 1.22345 0.88029 1.01043 0.97301 1.66575 1.05375 1.20874 1.30343 1.23304 0.91520 0.90392 1.01457 1.23479 0.98584 1.00195 0.92777 0.85696 1.23136 1.03285 0.94071 0.95609 1.22336 0.95290 0.89745 1.09189 1.18532 0.84906 0.80949 0.78542 1.90646 1.35594 1.77594 1.39870 1.49781 1.29763 1.22813 1.34770 1.23782 0.96586 0.97029 0.86172 1.20869 0.92716 0.97574 0.92060 1.20759 1.43437 0.90986 0.99559 0.90146 1.25001 0.94420 0.95862 0.97338 1.69891 1.43271 1.23573 1.16139 0.86888 0.79248 0.84156 0.79702 1.19979 1.21188 1.18688 1.23131 0.95710 0.85547 0.96282 1.22542 0.90422 1.01895 0.90416 0.92780 0.92839 0.92687 0.91187 0.92841 0.92389 0.92943 0.91787 0.92104 0.91638 0.91052 0.90360 0.94693 0.93086 0.89001 0.87460 0.88348 0.92790 0.89711 0.91614 0.92351 0.90132 0.92013 0.88881 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.10 -0.65 2.92 -90.62 -0.26 -0.91 16 3 C -0.15 -0.94 8.95 37.16 0.33 -0.61 16 4 C -0.11 -0.83 4.68 -26.73 -0.13 -0.95 16 5 C -0.12 -0.98 4.72 -26.73 -0.13 -1.11 16 6 C 0.04 0.41 5.09 -3.82 -0.02 0.39 16 7 N -0.51 -6.31 5.55 -226.70 -1.26 -7.56 16 8 C 0.06 0.64 5.10 -0.11 0.00 0.64 16 9 C -0.13 -1.68 6.68 -89.23 -0.60 -2.28 16 10 H 0.13 1.69 8.14 -51.93 -0.42 1.26 16 11 C -0.12 -1.53 9.85 -26.73 -0.26 -1.79 16 12 C -0.16 -2.47 2.69 -154.28 -0.42 -2.89 16 13 C 0.58 11.30 7.68 -10.98 -0.08 11.21 16 14 O -0.56 -12.48 17.59 5.55 0.10 -12.38 16 15 N -0.64 -12.54 3.63 -185.38 -0.67 -13.21 16 16 C 0.09 1.69 6.12 -8.64 -0.05 1.63 16 17 C -0.01 -0.28 2.98 -91.38 -0.27 -0.55 16 18 C -0.51 -13.10 9.39 -34.44 -0.32 -13.43 16 19 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 20 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 21 N -0.89 -25.54 13.96 55.43 0.77 -24.76 16 22 Si 0.87 19.80 27.42 -169.99 -4.66 15.14 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.26 -5.71 6.22 56.52 0.35 -5.36 16 26 C 0.11 2.33 8.19 -8.50 -0.07 2.26 16 27 C 0.07 1.04 5.59 -2.18 -0.01 1.02 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.52 5.24 -51.93 -0.27 0.24 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.34 7.88 -51.93 -0.41 -0.07 16 41 H 0.05 0.48 8.03 -51.93 -0.42 0.07 16 42 H 0.09 0.88 7.76 -51.93 -0.40 0.48 16 43 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 47 H 0.07 1.46 6.50 -51.93 -0.34 1.13 16 48 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 50 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 51 H 0.09 1.42 7.05 -51.93 -0.37 1.06 16 52 H 0.05 0.65 7.82 -51.93 -0.41 0.25 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -29.78 405.40 -11.40 -41.18 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -9.74 Total: 1.44 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.05 Total: -5.95 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -1.16 Total: -45.54 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.10 Total: -12.38 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.66 Total: 15.14 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.78 -11.40 -41.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277533721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.215 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds