Wall clock time and date at job start Tue Mar 31 2020 12:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46855 * 2 1 4 4 C 1.52997 * 109.46929 * 119.99706 * 2 1 3 5 5 H 1.09004 * 109.47091 * 54.25170 * 4 2 1 6 6 C 1.53006 * 109.47310 * 294.25876 * 4 2 1 7 7 C 1.52994 * 109.46979 * 175.00323 * 6 4 2 8 8 O 1.42905 * 109.47035 * 179.97438 * 7 6 4 9 9 N 1.46898 * 109.47110 * 174.25403 * 4 2 1 10 10 C 1.46893 * 111.00184 * 279.22883 * 9 4 2 11 11 C 1.50700 * 109.47101 * 175.16163 * 10 9 4 12 12 C 1.38285 * 119.92328 * 269.72843 * 11 10 9 13 13 C 1.38114 * 120.06928 * 179.73038 * 12 11 10 14 14 C 1.38902 * 119.92828 * 0.54132 * 13 12 11 15 15 N 1.39667 * 120.07799 * 179.75370 * 14 13 12 16 16 C 1.46507 * 120.00238 * 179.97438 * 15 14 13 17 17 C 1.46497 * 119.99951 * 359.97438 * 15 14 13 18 18 C 1.50703 * 109.46996 * 90.00408 * 17 15 14 19 19 H 1.08004 * 119.99881 * 359.97438 * 18 17 15 20 20 C 1.37880 * 120.00023 * 180.02562 * 18 17 15 21 21 N 1.31510 * 120.00132 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47107 * 59.99211 * 22 20 18 24 24 H 1.48502 * 109.46723 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46786 * 299.99321 * 22 20 18 26 26 C 1.38918 * 119.85041 * 359.73200 * 14 13 12 27 27 C 1.38112 * 119.92168 * 0.02562 * 26 14 13 28 28 H 1.08994 * 109.46995 * 305.23469 * 1 2 3 29 29 H 1.09001 * 109.46913 * 65.23337 * 1 2 3 30 30 H 1.08994 * 109.46818 * 185.23151 * 1 2 3 31 31 H 1.08994 * 109.46891 * 239.99775 * 2 1 3 32 32 H 1.09004 * 109.47070 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46988 * 299.99501 * 3 2 1 34 34 H 1.08998 * 109.47315 * 59.99755 * 3 2 1 35 35 H 1.08994 * 109.47257 * 54.99797 * 6 4 2 36 36 H 1.09005 * 109.46195 * 294.99809 * 6 4 2 37 37 H 1.09005 * 109.47238 * 299.98848 * 7 6 4 38 38 H 1.08994 * 109.47555 * 59.99657 * 7 6 4 39 39 H 0.96698 * 114.00412 * 179.97438 * 8 7 6 40 40 H 1.00902 * 110.99889 * 43.18928 * 9 4 2 41 41 H 1.09003 * 109.47590 * 295.16389 * 10 9 4 42 42 H 1.09003 * 109.47083 * 55.16615 * 10 9 4 43 43 H 1.07994 * 119.96481 * 359.97438 * 12 11 10 44 44 H 1.08001 * 120.03485 * 180.27327 * 13 12 11 45 45 H 1.08999 * 109.46967 * 90.00097 * 16 15 14 46 46 H 1.08998 * 109.46866 * 209.99995 * 16 15 14 47 47 H 1.09000 * 109.46926 * 330.00078 * 16 15 14 48 48 H 1.09000 * 109.47430 * 210.00186 * 17 15 14 49 49 H 1.08996 * 109.47192 * 330.00278 * 17 15 14 50 50 H 0.96992 * 120.00176 * 180.02562 * 21 20 18 51 51 H 1.07991 * 120.03942 * 179.97438 * 26 14 13 52 52 H 1.07998 * 119.95843 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5951 -1.7149 1.3023 6 6 1.6513 0.0786 2.4944 7 6 2.0508 -0.7026 3.7476 8 8 1.6882 0.0446 4.9105 9 7 3.5025 -0.8424 1.1820 10 6 3.8985 -1.9713 0.3296 11 6 5.3987 -1.9923 0.1887 12 6 6.0040 -1.3042 -0.8469 13 6 7.3791 -1.3168 -0.9756 14 6 8.1534 -2.0309 -0.0701 15 7 9.5438 -2.0500 -0.2004 16 6 10.3589 -2.8032 0.7560 17 6 10.1872 -1.3168 -1.2934 18 6 10.5012 0.0860 -0.8408 19 1 10.2466 0.4000 0.1607 20 6 11.1127 0.9687 -1.7057 21 7 11.4223 0.5865 -2.9253 22 14 11.5026 2.7073 -1.1444 23 1 12.4182 2.6568 0.0235 24 1 12.1547 3.4505 -2.2524 25 1 10.2451 3.3964 -0.7582 26 6 7.5417 -2.7257 0.9657 27 6 6.1664 -2.7047 1.0916 28 1 -0.3633 0.5929 0.8394 29 1 -0.3633 0.4305 -0.9332 30 1 -0.3633 -1.0233 0.0937 31 1 1.8934 -0.5138 -0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 0.5741 0.2448 2.4977 36 1 2.1671 1.0389 2.4849 37 1 1.5350 -1.6629 3.7571 38 1 3.1280 -0.8688 3.7442 39 1 1.9120 -0.3916 5.7440 40 1 3.9222 0.0173 0.8616 41 1 3.5630 -2.9042 0.7829 42 1 3.4427 -1.8610 -0.6544 43 1 5.4011 -0.7532 -1.5534 44 1 7.8515 -0.7756 -1.7821 45 1 10.4936 -3.8228 0.3948 46 1 11.3320 -2.3234 0.8610 47 1 9.8576 -2.8237 1.7237 48 1 11.1104 -1.8225 -1.5762 49 1 9.5156 -1.2801 -2.1511 50 1 11.8528 1.2073 -3.5335 51 1 8.1407 -3.2821 1.6712 52 1 5.6903 -3.2450 1.8964 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266189695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:51 Heat of formation + Delta-G solvation = -53.898581 kcal Electronic energy + Delta-G solvation = -27160.170466 eV Core-core repulsion = 23544.009233 eV Total energy + Delta-G solvation = -3616.161233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.54360 -39.62319 -37.60396 -37.17580 -34.96194 -34.24597 -32.12774 -31.87345 -30.54292 -29.57923 -28.12677 -27.26226 -26.00648 -24.88670 -23.55380 -23.09377 -22.92362 -21.01573 -20.18153 -18.64013 -18.21623 -17.97347 -17.00746 -16.70638 -16.61288 -16.30045 -15.84252 -15.68141 -15.32194 -15.20175 -15.14532 -14.65411 -14.30021 -14.25893 -14.07827 -13.92100 -13.70939 -13.50304 -13.40546 -13.16705 -13.06135 -12.96276 -12.68054 -12.61719 -12.52873 -12.27735 -12.16111 -12.12474 -11.94525 -11.79380 -11.75162 -11.60872 -11.41590 -11.27902 -10.72653 -10.64943 -10.40565 -9.65590 -9.17951 -8.36636 -7.79814 -6.38380 0.71936 0.85685 1.36525 1.38186 1.46574 2.33565 2.63793 3.03664 3.05504 3.38426 3.53670 3.90347 4.01314 4.06150 4.15931 4.19208 4.26834 4.29092 4.40569 4.47421 4.53046 4.61984 4.65560 4.69136 4.72300 4.73042 4.80738 4.83883 4.87420 4.90772 4.93922 5.01151 5.02466 5.08223 5.14166 5.20006 5.22449 5.25551 5.30912 5.34464 5.40664 5.49923 5.59427 5.68413 5.70271 5.94331 6.06545 6.18634 6.27032 6.49840 6.50640 6.82166 6.94329 6.97323 7.33585 8.82318 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.012413 B = 0.002815 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.192285 B = 9942.960398 C =10581.923430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C -0.152 4.152 4 C 0.100 3.900 5 H 0.088 0.912 6 C -0.105 4.105 7 C 0.081 3.919 8 O -0.601 6.601 9 N -0.684 5.684 10 C 0.121 3.879 11 C -0.159 4.159 12 C -0.068 4.068 13 C -0.217 4.217 14 C 0.212 3.788 15 N -0.633 5.633 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.542 4.542 19 H 0.049 0.951 20 C 0.013 3.987 21 N -0.927 5.927 22 Si 0.960 3.040 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.273 1.273 26 C -0.219 4.219 27 C -0.048 4.048 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.394 0.606 40 H 0.338 0.662 41 H 0.087 0.913 42 H 0.037 0.963 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.009 0.991 49 H 0.010 0.990 50 H 0.267 0.733 51 H 0.132 0.868 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.250 -5.800 10.373 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.209 4.209 4 C -0.010 4.010 5 H 0.106 0.894 6 C -0.142 4.142 7 C 0.004 3.996 8 O -0.409 6.409 9 N -0.315 5.315 10 C -0.008 4.008 11 C -0.162 4.162 12 C -0.088 4.088 13 C -0.240 4.240 14 C 0.108 3.892 15 N -0.341 5.341 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.581 4.581 19 H 0.067 0.933 20 C -0.186 4.186 21 N -0.566 5.566 22 Si 0.785 3.215 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.199 1.199 26 C -0.241 4.241 27 C -0.067 4.067 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.243 0.757 40 H 0.158 0.842 41 H 0.105 0.895 42 H 0.055 0.945 43 H 0.138 0.862 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.027 0.973 49 H 0.028 0.972 50 H 0.076 0.924 51 H 0.149 0.851 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.077 -5.712 10.323 24.155 hybrid contribution 1.001 1.111 -0.863 1.726 sum -20.077 -4.601 9.460 22.666 Atomic orbital electron populations 1.21813 0.93913 1.02276 1.02019 1.21741 0.97323 0.96587 0.98686 1.21912 1.00481 0.96341 1.02205 1.21551 0.87463 0.99096 0.92921 0.89424 1.21522 1.01283 0.98988 0.92454 1.22138 0.99216 0.93578 0.84697 1.86393 1.86065 1.50854 1.17634 1.60797 1.07953 1.07766 1.55026 1.20653 0.89687 0.95085 0.95335 1.19544 0.95850 1.03190 0.97608 1.20817 0.92781 0.97523 0.97641 1.20747 0.94768 1.06103 1.02338 1.18224 0.83565 0.93414 0.94028 1.46966 1.02799 1.53113 1.31182 1.21598 0.95246 0.95004 0.92635 1.18755 0.91442 0.90113 0.85144 1.21755 1.39311 0.98037 0.99022 0.93311 1.25772 0.95232 1.02799 0.94790 1.70023 1.42375 1.37477 1.06765 0.85574 0.78552 0.79278 0.78092 1.19342 1.20324 1.19871 1.20826 0.95897 1.07076 1.00336 1.20881 0.91956 0.96527 0.97305 0.92170 0.92646 0.91949 0.91553 0.93570 0.92472 0.91967 0.90683 0.92376 0.93194 0.93078 0.75733 0.84197 0.89516 0.94459 0.86197 0.88880 0.92915 0.92599 0.90339 0.97334 0.97165 0.92361 0.85065 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.84 71.99 0.64 -1.17 16 2 C -0.12 -1.88 2.77 -10.79 -0.03 -1.91 16 3 C -0.15 -2.58 8.49 71.98 0.61 -1.97 16 4 C 0.10 1.58 1.79 44.92 0.08 1.66 16 5 H 0.09 1.25 7.92 -2.38 -0.02 1.23 16 6 C -0.10 -1.78 4.45 30.59 0.14 -1.65 16 7 C 0.08 1.40 6.93 71.98 0.50 1.90 16 8 O -0.60 -11.18 13.66 -148.98 -2.04 -13.22 16 9 N -0.68 -13.52 5.71 -495.58 -2.83 -16.36 16 10 C 0.12 2.47 5.63 85.56 0.48 2.95 16 11 C -0.16 -4.40 5.34 -19.84 -0.11 -4.51 16 12 C -0.07 -2.27 9.69 22.25 0.22 -2.06 16 13 C -0.22 -9.05 9.21 22.40 0.21 -8.85 16 14 C 0.21 8.68 6.55 38.21 0.25 8.93 16 15 N -0.63 -27.94 2.99 -726.56 -2.17 -30.11 16 16 C 0.10 3.44 10.19 127.77 1.30 4.74 16 17 C 0.27 14.17 4.91 85.63 0.42 14.60 16 18 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 19 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 20 C 0.01 0.75 5.46 84.66 0.46 1.22 16 21 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 22 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 26 C -0.22 -7.18 9.21 22.40 0.21 -6.97 16 27 C -0.05 -1.32 9.69 22.25 0.22 -1.11 16 28 H 0.06 0.75 6.74 -2.39 -0.02 0.73 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 1.10 7.00 -2.39 -0.02 1.08 16 32 H 0.05 0.89 6.49 -2.38 -0.02 0.87 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.04 6.45 -2.39 -0.02 1.02 16 35 H 0.07 1.20 6.49 -2.39 -0.02 1.18 16 36 H 0.06 1.17 6.65 -2.38 -0.02 1.15 16 37 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.05 0.99 7.75 -2.39 -0.02 0.98 16 39 H 0.39 3.89 9.12 -74.06 -0.68 3.21 16 40 H 0.34 7.63 6.61 -89.69 -0.59 7.04 16 41 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 42 H 0.04 0.74 6.92 -2.39 -0.02 0.72 16 43 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 44 H 0.09 4.52 6.14 -2.91 -0.02 4.50 16 45 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 47 H 0.08 2.33 6.20 -2.39 -0.01 2.32 16 48 H 0.01 0.48 8.07 -2.39 -0.02 0.46 16 49 H 0.01 0.59 6.20 -2.39 -0.01 0.58 16 50 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 51 H 0.13 3.75 6.14 -2.92 -0.02 3.73 16 52 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -65.57 405.04 0.74 -64.82 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.36 Total: 27.65 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 5.83 Total: -24.73 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -4.72 Total: -100.91 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -2.04 Total: -13.22 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.57 0.74 -64.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266189695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.924 kcal (2) G-P(sol) polarization free energy of solvation -65.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds