Wall clock time and date at job start Tue Mar 31 2020 12:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 C 1.53001 * 109.47274 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47394 * 180.02562 * 4 3 2 6 6 C 1.42906 * 114.00010 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47024 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47020 * 64.99964 * 7 6 5 9 9 C 1.46902 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46656 * 179.97438 * 9 8 7 11 11 C 1.38280 * 119.92897 * 269.72802 * 10 9 8 12 12 C 1.38103 * 120.07444 * 179.72759 * 11 10 9 13 13 C 1.38906 * 119.92389 * 0.54815 * 12 11 10 14 14 N 1.39674 * 120.07564 * 179.75193 * 13 12 11 15 15 C 1.46496 * 120.00521 * 179.97438 * 14 13 12 16 16 C 1.46506 * 119.99758 * 359.97200 * 14 13 12 17 17 C 1.50695 * 109.47155 * 90.00571 * 16 14 13 18 18 H 1.07999 * 119.99981 * 359.97438 * 17 16 14 19 19 C 1.37877 * 120.00359 * 180.02562 * 17 16 14 20 20 N 1.31516 * 119.99598 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00282 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47179 * 59.99763 * 21 19 17 23 23 H 1.48495 * 109.46941 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47032 * 299.99913 * 21 19 17 25 25 C 1.38905 * 119.85375 * 359.72287 * 13 12 11 26 26 C 1.38108 * 119.92517 * 0.02562 * 25 13 12 27 27 H 1.08991 * 109.47392 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46979 * 300.00297 * 1 2 3 29 29 H 1.09002 * 109.47197 * 59.99408 * 1 2 3 30 30 H 1.08996 * 109.47004 * 239.99664 * 2 1 3 31 31 H 1.09006 * 109.46961 * 120.00150 * 2 1 3 32 32 H 1.09005 * 109.47106 * 60.00422 * 3 2 1 33 33 H 1.08997 * 109.47149 * 299.99771 * 3 2 1 34 34 H 1.09005 * 109.46979 * 59.99702 * 4 3 2 35 35 H 1.09002 * 109.47197 * 300.00592 * 4 3 2 36 36 H 1.08999 * 109.47154 * 59.99792 * 6 5 4 37 37 H 1.09001 * 109.46971 * 300.00053 * 6 5 4 38 38 H 1.09002 * 109.47142 * 305.00174 * 7 6 5 39 39 H 1.09000 * 109.46991 * 184.99919 * 7 6 5 40 40 H 1.00896 * 111.00309 * 56.04370 * 8 7 6 41 41 H 1.08990 * 109.47358 * 299.99539 * 9 8 7 42 42 H 1.09004 * 109.47457 * 60.00221 * 9 8 7 43 43 H 1.07998 * 119.95898 * 359.97438 * 11 10 9 44 44 H 1.08003 * 120.03747 * 180.27137 * 12 11 10 45 45 H 1.08996 * 109.47702 * 89.99190 * 15 14 13 46 46 H 1.08997 * 109.47558 * 209.99831 * 15 14 13 47 47 H 1.09006 * 109.46777 * 329.99813 * 15 14 13 48 48 H 1.09004 * 109.46781 * 210.00196 * 16 14 13 49 49 H 1.08997 * 109.47198 * 329.99952 * 16 14 13 50 50 H 0.97003 * 119.99619 * 180.02562 * 20 19 17 51 51 H 1.08006 * 120.04526 * 179.97438 * 25 13 12 52 52 H 1.08001 * 119.96705 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4710 2.9024 -0.0012 7 6 5.8656 4.3807 -0.0010 8 7 5.4273 5.0043 1.2548 9 6 5.7906 6.4273 1.2906 10 6 5.3253 7.0318 2.5904 11 6 4.0651 7.5943 2.6776 12 6 3.6336 8.1441 3.8687 13 6 4.4713 8.1419 4.9767 14 7 4.0400 8.7017 6.1814 15 6 4.9246 8.6980 7.3492 16 6 2.7029 9.2927 6.2773 17 6 1.7167 8.2371 6.7061 18 1 2.0522 7.2269 6.8885 19 6 0.3858 8.5606 6.8645 20 7 -0.0229 9.7907 6.6419 21 14 -0.8368 7.2519 7.3954 22 1 -0.4390 6.7109 8.7199 23 1 -2.1921 7.8510 7.4927 24 1 -0.8512 6.1535 6.3961 25 6 5.7388 7.5811 4.8841 26 6 6.1621 7.0283 3.6914 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8901 33 1 1.6768 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8909 35 1 3.9338 0.9284 0.8891 36 1 5.8730 2.4195 -0.8918 37 1 5.8745 2.4182 0.8881 38 1 5.3891 4.8840 -0.8423 39 1 6.9483 4.4677 -0.0914 40 1 5.8044 4.5150 2.0525 41 1 6.8728 6.5281 1.2095 42 1 5.3139 6.9451 0.4583 43 1 3.4161 7.6000 1.8143 44 1 2.6475 8.5793 3.9374 45 1 5.5259 9.6071 7.3525 46 1 4.3256 8.6553 8.2587 47 1 5.5808 7.8287 7.3051 48 1 2.7139 10.0990 7.0107 49 1 2.4106 9.6897 5.3052 50 1 -0.9591 10.0184 6.7537 51 1 6.3929 7.5780 5.7435 52 1 7.1476 6.5924 3.6185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299330337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:21 Heat of formation + Delta-G solvation = -31.709732 kcal Electronic energy + Delta-G solvation = -26175.799808 eV Core-core repulsion = 22560.600756 eV Total energy + Delta-G solvation = -3615.199052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.02635 -38.35679 -36.56606 -35.40381 -34.64297 -32.68250 -30.95834 -30.38863 -29.33911 -27.90221 -27.71654 -25.39634 -23.87864 -23.45478 -22.21688 -21.94559 -21.47788 -21.18041 -19.52078 -16.95723 -16.63708 -16.52959 -16.41486 -15.63970 -15.33413 -15.19098 -14.63210 -14.41542 -14.23878 -14.22242 -13.77997 -13.64804 -13.42014 -13.12214 -12.91067 -12.81766 -12.67239 -12.27621 -12.11738 -11.83888 -11.77464 -11.57752 -11.39020 -11.36044 -11.21465 -11.19403 -11.00346 -10.91228 -10.84283 -10.63955 -10.58187 -10.22453 -9.86784 -9.72875 -9.67296 -8.81427 -8.46993 -8.28348 -8.20432 -6.42926 -5.98327 -4.14045 2.16433 2.26687 3.31318 3.35343 3.39380 3.51336 4.16304 4.24095 4.44744 4.69087 4.71576 4.72022 4.86726 4.98272 5.00230 5.08835 5.19258 5.24607 5.24989 5.29770 5.38752 5.39603 5.43337 5.58824 5.60442 5.61008 5.65739 5.69684 5.75678 5.83822 5.89370 5.91533 6.03416 6.06313 6.11927 6.12294 6.30843 6.44175 6.48885 6.68813 6.95057 7.02858 7.09877 7.17751 7.23493 7.31302 7.42186 7.50179 7.65669 7.84342 8.18883 8.30463 8.52604 8.94728 9.52720 10.98924 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.007996 B = 0.002997 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.954956 B = 9339.735381 C =12219.962886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.120 4.120 4 C 0.061 3.939 5 O -0.369 6.369 6 C 0.067 3.933 7 C 0.059 3.941 8 N -0.676 5.676 9 C 0.116 3.884 10 C -0.172 4.172 11 C -0.049 4.049 12 C -0.188 4.188 13 C 0.241 3.759 14 N -0.616 5.616 15 C 0.099 3.901 16 C 0.249 3.751 17 C -0.531 4.531 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.223 4.223 26 C -0.069 4.069 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.339 0.661 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.131 0.869 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.036 0.964 50 H 0.264 0.736 51 H 0.112 0.888 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.418 -14.210 -13.243 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.015 4.015 5 O -0.288 6.288 6 C -0.010 4.010 7 C -0.070 4.070 8 N -0.307 5.307 9 C -0.012 4.012 10 C -0.175 4.175 11 C -0.069 4.069 12 C -0.210 4.210 13 C 0.134 3.866 14 N -0.322 5.322 15 C -0.045 4.045 16 C 0.130 3.870 17 C -0.570 4.570 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.246 4.246 26 C -0.089 4.089 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.157 0.843 41 H 0.044 0.956 42 H 0.090 0.910 43 H 0.130 0.870 44 H 0.149 0.851 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.054 0.946 50 H 0.074 0.926 51 H 0.130 0.870 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.402 -13.696 -13.255 21.713 hybrid contribution 0.369 -1.042 0.598 1.257 sum 10.770 -14.738 -12.657 22.213 Atomic orbital electron populations 1.21760 0.95388 1.01598 1.02274 1.21436 0.96327 0.96187 1.01904 1.21544 0.93469 0.97009 1.03747 1.22485 0.95306 0.84284 0.99473 1.88041 1.20223 1.25302 1.95192 1.22486 0.82340 0.96667 0.99556 1.21976 0.97060 0.93385 0.94590 1.60469 1.64349 1.02616 1.03275 1.20655 0.96668 0.87861 0.96002 1.19168 0.96165 1.07076 0.95042 1.20651 0.94346 0.95134 0.96732 1.20900 1.01102 1.06851 0.92163 1.17955 0.91921 0.90154 0.86568 1.47094 1.16897 1.61042 1.07145 1.21461 0.93999 0.99587 0.89492 1.19276 0.76590 0.93292 0.97879 1.21546 0.92612 0.96523 1.46352 0.92312 1.24957 0.98268 0.95523 0.95285 1.69924 1.16508 1.17952 1.49087 0.86581 0.80015 0.81799 0.79237 1.20274 1.21187 1.20016 1.20503 0.96597 1.08949 0.98519 1.20496 0.97926 0.98079 0.92371 0.92744 0.92357 0.92619 0.92136 0.91929 0.90694 0.91204 0.94023 0.93704 0.93368 0.93621 0.90226 0.94223 0.84256 0.95621 0.91012 0.86984 0.85087 0.94676 0.91486 0.92743 0.95248 0.94610 0.92609 0.87008 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.12 -1.16 5.58 -26.73 -0.15 -1.31 16 4 C 0.06 0.60 5.94 37.16 0.22 0.82 16 5 O -0.37 -4.59 10.29 -35.23 -0.36 -4.95 16 6 C 0.07 0.65 6.22 37.16 0.23 0.88 16 7 C 0.06 0.60 6.07 -3.82 -0.02 0.58 16 8 N -0.68 -8.62 6.44 -115.05 -0.74 -9.37 16 9 C 0.12 1.51 5.81 -4.97 -0.03 1.48 16 10 C -0.17 -2.74 5.39 -104.58 -0.56 -3.31 16 11 C -0.05 -0.89 9.69 -39.62 -0.38 -1.28 16 12 C -0.19 -3.93 9.21 -39.38 -0.36 -4.30 16 13 C 0.24 5.00 6.55 -83.79 -0.55 4.45 16 14 N -0.62 -13.46 2.99 -181.01 -0.54 -14.00 16 15 C 0.10 1.77 10.19 59.84 0.61 2.38 16 16 C 0.25 6.36 4.91 -5.19 -0.03 6.33 16 17 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 21 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.22 -3.95 9.21 -39.38 -0.36 -4.31 16 26 C -0.07 -1.09 9.69 -39.61 -0.38 -1.48 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.34 4.22 8.72 -39.29 -0.34 3.88 16 41 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 42 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 43 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 44 H 0.13 3.02 6.14 -52.48 -0.32 2.70 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 47 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16 48 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 49 H 0.04 0.96 6.20 -51.93 -0.32 0.64 16 50 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 51 H 0.11 1.79 6.14 -52.48 -0.32 1.46 16 52 H 0.10 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 420.96 15.07 6.34 6.34 Total: -1.00 -30.23 420.96 -11.19 -41.41 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -9.62 Total: 3.57 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -1.98 Total: -14.40 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.55 Total: -48.61 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.36 Total: -4.95 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -30.23 -11.19 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299330337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.702 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds