Wall clock time and date at job start Tue Mar 31 2020 12:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 C 1.53001 * 109.47274 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47394 * 180.02562 * 4 3 2 6 6 C 1.42906 * 114.00010 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47024 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47020 * 64.99964 * 7 6 5 9 9 C 1.46902 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46656 * 179.97438 * 9 8 7 11 11 C 1.38280 * 119.92897 * 269.72802 * 10 9 8 12 12 C 1.38103 * 120.07444 * 179.72759 * 11 10 9 13 13 C 1.38906 * 119.92389 * 0.54815 * 12 11 10 14 14 N 1.39674 * 120.07564 * 179.75193 * 13 12 11 15 15 C 1.46496 * 120.00521 * 179.97438 * 14 13 12 16 16 C 1.46506 * 119.99758 * 359.97200 * 14 13 12 17 17 C 1.50695 * 109.47155 * 90.00571 * 16 14 13 18 18 H 1.07999 * 119.99981 * 359.97438 * 17 16 14 19 19 C 1.37877 * 120.00359 * 180.02562 * 17 16 14 20 20 N 1.31516 * 119.99598 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00282 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47179 * 59.99763 * 21 19 17 23 23 H 1.48495 * 109.46941 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47032 * 299.99913 * 21 19 17 25 25 C 1.38905 * 119.85375 * 359.72287 * 13 12 11 26 26 C 1.38108 * 119.92517 * 0.02562 * 25 13 12 27 27 H 1.08991 * 109.47392 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46979 * 300.00297 * 1 2 3 29 29 H 1.09002 * 109.47197 * 59.99408 * 1 2 3 30 30 H 1.08996 * 109.47004 * 239.99664 * 2 1 3 31 31 H 1.09006 * 109.46961 * 120.00150 * 2 1 3 32 32 H 1.09005 * 109.47106 * 60.00422 * 3 2 1 33 33 H 1.08997 * 109.47149 * 299.99771 * 3 2 1 34 34 H 1.09005 * 109.46979 * 59.99702 * 4 3 2 35 35 H 1.09002 * 109.47197 * 300.00592 * 4 3 2 36 36 H 1.08999 * 109.47154 * 59.99792 * 6 5 4 37 37 H 1.09001 * 109.46971 * 300.00053 * 6 5 4 38 38 H 1.09002 * 109.47142 * 305.00174 * 7 6 5 39 39 H 1.09000 * 109.46991 * 184.99919 * 7 6 5 40 40 H 1.00896 * 111.00309 * 56.04370 * 8 7 6 41 41 H 1.08990 * 109.47358 * 299.99539 * 9 8 7 42 42 H 1.09004 * 109.47457 * 60.00221 * 9 8 7 43 43 H 1.07998 * 119.95898 * 359.97438 * 11 10 9 44 44 H 1.08003 * 120.03747 * 180.27137 * 12 11 10 45 45 H 1.08996 * 109.47702 * 89.99190 * 15 14 13 46 46 H 1.08997 * 109.47558 * 209.99831 * 15 14 13 47 47 H 1.09006 * 109.46777 * 329.99813 * 15 14 13 48 48 H 1.09004 * 109.46781 * 210.00196 * 16 14 13 49 49 H 1.08997 * 109.47198 * 329.99952 * 16 14 13 50 50 H 0.97003 * 119.99619 * 180.02562 * 20 19 17 51 51 H 1.08006 * 120.04526 * 179.97438 * 25 13 12 52 52 H 1.08001 * 119.96705 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 8 4.0464 2.7897 0.0000 6 6 5.4710 2.9024 -0.0012 7 6 5.8656 4.3807 -0.0010 8 7 5.4273 5.0043 1.2548 9 6 5.7906 6.4273 1.2906 10 6 5.3253 7.0318 2.5904 11 6 4.0651 7.5943 2.6776 12 6 3.6336 8.1441 3.8687 13 6 4.4713 8.1419 4.9767 14 7 4.0400 8.7017 6.1814 15 6 4.9246 8.6980 7.3492 16 6 2.7029 9.2927 6.2773 17 6 1.7167 8.2371 6.7061 18 1 2.0522 7.2269 6.8885 19 6 0.3858 8.5606 6.8645 20 7 -0.0229 9.7907 6.6419 21 14 -0.8368 7.2519 7.3954 22 1 -0.4390 6.7109 8.7199 23 1 -2.1921 7.8510 7.4927 24 1 -0.8512 6.1535 6.3961 25 6 5.7388 7.5811 4.8841 26 6 6.1621 7.0283 3.6914 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 0.8901 33 1 1.6768 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8909 35 1 3.9338 0.9284 0.8891 36 1 5.8730 2.4195 -0.8918 37 1 5.8745 2.4182 0.8881 38 1 5.3891 4.8840 -0.8423 39 1 6.9483 4.4677 -0.0914 40 1 5.8044 4.5150 2.0525 41 1 6.8728 6.5281 1.2095 42 1 5.3139 6.9451 0.4583 43 1 3.4161 7.6000 1.8143 44 1 2.6475 8.5793 3.9374 45 1 5.5259 9.6071 7.3525 46 1 4.3256 8.6553 8.2587 47 1 5.5808 7.8287 7.3051 48 1 2.7139 10.0990 7.0107 49 1 2.4106 9.6897 5.3052 50 1 -0.9591 10.0184 6.7537 51 1 6.3929 7.5780 5.7435 52 1 7.1476 6.5924 3.6185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299330337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:20 Heat of formation + Delta-G solvation = -48.634052 kcal Electronic energy + Delta-G solvation = -26176.533702 eV Core-core repulsion = 22560.600756 eV Total energy + Delta-G solvation = -3615.932946 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.45266 -39.18591 -37.83187 -36.48902 -35.58232 -34.71666 -32.07348 -31.87750 -30.28052 -29.62285 -28.82004 -26.86703 -25.45977 -24.16836 -23.56261 -23.02481 -22.86280 -21.88689 -21.00236 -18.63789 -18.15202 -17.69670 -17.28194 -16.90573 -16.68755 -16.12232 -16.09742 -15.63559 -15.41020 -15.30524 -15.08304 -14.96084 -14.52316 -14.28930 -14.11404 -14.02396 -13.93431 -13.55079 -13.18111 -13.16219 -13.06978 -12.99825 -12.78286 -12.66423 -12.52775 -12.38817 -12.19341 -12.10069 -11.93213 -11.80879 -11.77066 -11.63878 -11.52172 -11.40141 -10.64384 -10.47734 -10.38497 -9.65721 -9.18185 -8.36250 -7.79616 -6.37751 0.72191 0.84966 1.36103 1.38895 1.46822 2.34155 2.64029 2.79666 3.03472 3.05965 3.56316 3.99359 3.99544 4.07330 4.13841 4.20757 4.23984 4.28895 4.32537 4.41850 4.44310 4.47442 4.51499 4.59502 4.65937 4.69473 4.72381 4.74701 4.78971 4.88461 4.91161 4.92024 4.94924 5.00193 5.02729 5.05029 5.13474 5.20959 5.23695 5.33792 5.34563 5.43524 5.59628 5.66722 5.70169 5.94874 6.07082 6.15004 6.24692 6.41601 6.50369 6.59900 6.82599 6.94587 7.34025 8.82913 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.007996 B = 0.002997 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.954956 B = 9339.735381 C =12219.962886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.120 4.120 4 C 0.060 3.940 5 O -0.402 6.402 6 C 0.063 3.937 7 C 0.061 3.939 8 N -0.695 5.695 9 C 0.122 3.878 10 C -0.159 4.159 11 C -0.058 4.058 12 C -0.217 4.217 13 C 0.211 3.789 14 N -0.632 5.632 15 C 0.098 3.902 16 C 0.267 3.733 17 C -0.543 4.543 18 H 0.048 0.952 19 C 0.013 3.987 20 N -0.927 5.927 21 Si 0.961 3.039 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.216 4.216 26 C -0.061 4.061 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.342 0.658 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.010 0.990 49 H 0.009 0.991 50 H 0.267 0.733 51 H 0.135 0.865 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.864 -16.769 -14.108 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.157 4.157 4 C -0.016 4.016 5 O -0.322 6.322 6 C -0.013 4.013 7 C -0.067 4.067 8 N -0.328 5.328 9 C -0.006 4.006 10 C -0.161 4.161 11 C -0.077 4.077 12 C -0.240 4.240 13 C 0.107 3.893 14 N -0.340 5.340 15 C -0.045 4.045 16 C 0.145 3.855 17 C -0.582 4.582 18 H 0.067 0.933 19 C -0.187 4.187 20 N -0.566 5.566 21 Si 0.785 3.215 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.239 4.239 26 C -0.080 4.080 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.160 0.840 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.133 0.867 44 H 0.110 0.890 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.028 0.972 49 H 0.027 0.973 50 H 0.076 0.924 51 H 0.153 0.847 52 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.885 -16.272 -14.135 25.112 hybrid contribution -0.305 -0.275 0.742 0.848 sum 12.580 -16.547 -13.393 24.727 Atomic orbital electron populations 1.21782 0.95468 1.02230 1.01739 1.21414 0.96240 0.94921 1.02790 1.21545 0.93920 0.98041 1.02236 1.22576 0.94984 0.83578 1.00512 1.88001 1.21935 1.26784 1.95444 1.22637 0.81190 0.96617 1.00903 1.22025 0.98472 0.93346 0.92898 1.60390 1.65375 1.02465 1.04536 1.20602 0.98076 0.88024 0.93907 1.19545 0.94786 1.05054 0.96747 1.20777 0.95796 0.95343 0.95799 1.20765 1.00126 1.08986 0.94153 1.18227 0.93431 0.91710 0.85964 1.46958 1.16054 1.62122 1.08892 1.21602 0.93644 1.01590 0.87626 1.18755 0.78781 0.92410 0.95525 1.21755 0.93607 0.96424 1.46365 0.93346 1.25783 1.00065 0.97599 0.95226 1.70031 1.17028 1.19709 1.49872 0.85570 0.77889 0.79005 0.79018 1.19154 1.20203 1.20093 1.20796 0.95231 1.07663 1.00196 1.20937 0.99380 0.96547 0.91088 0.91511 0.93483 0.92618 0.90646 0.91550 0.93056 0.91853 0.92146 0.93308 0.91144 0.93001 0.91030 0.91596 0.84009 0.92952 0.91143 0.86666 0.88981 0.92872 0.92573 0.90262 0.97205 0.97294 0.92359 0.84741 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.12 -1.67 5.93 30.59 0.18 -1.49 16 3 C -0.12 -2.28 5.58 30.59 0.17 -2.11 16 4 C 0.06 1.09 5.94 71.98 0.43 1.52 16 5 O -0.40 -9.48 10.29 -148.98 -1.53 -11.01 16 6 C 0.06 1.06 6.22 71.98 0.45 1.51 16 7 C 0.06 1.07 6.07 86.30 0.52 1.59 16 8 N -0.70 -15.96 6.44 -517.91 -3.33 -19.29 16 9 C 0.12 2.81 5.81 85.56 0.50 3.30 16 10 C -0.16 -4.75 5.39 -19.84 -0.11 -4.86 16 11 C -0.06 -2.13 9.69 22.25 0.22 -1.92 16 12 C -0.22 -9.62 9.21 22.40 0.21 -9.41 16 13 C 0.21 8.93 6.55 38.21 0.25 9.18 16 14 N -0.63 -28.50 2.99 -726.58 -2.17 -30.67 16 15 C 0.10 3.48 10.19 127.77 1.30 4.78 16 16 C 0.27 14.46 4.91 85.63 0.42 14.88 16 17 C -0.54 -31.43 9.39 25.60 0.24 -31.19 16 18 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 19 C 0.01 0.72 5.46 84.65 0.46 1.18 16 20 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 21 Si 0.96 45.30 29.54 68.60 2.03 47.32 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 C -0.22 -7.21 9.21 22.40 0.21 -7.01 16 26 C -0.06 -1.71 9.69 22.25 0.22 -1.49 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.34 7.47 8.72 -89.70 -0.78 6.68 16 41 H 0.05 0.96 8.08 -2.39 -0.02 0.94 16 42 H 0.07 1.66 8.08 -2.38 -0.02 1.64 16 43 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 44 H 0.09 4.70 6.14 -2.91 -0.02 4.68 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 47 H 0.08 2.36 6.20 -2.38 -0.01 2.35 16 48 H 0.01 0.56 8.07 -2.38 -0.02 0.54 16 49 H 0.01 0.53 6.20 -2.39 -0.01 0.52 16 50 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 51 H 0.13 3.83 6.14 -2.91 -0.02 3.81 16 52 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -68.43 420.96 1.73 -66.70 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.08 Total: 25.42 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 6.37 Total: -23.07 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -5.22 Total: -105.36 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -1.53 Total: -11.01 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -68.43 1.73 -66.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299330337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.067 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds