Wall clock time and date at job start Tue Mar 31 2020 12:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99797 * 2 1 4 4 N 1.46897 * 109.47001 * 124.22860 * 3 2 1 5 5 C 1.46900 * 110.99968 * 60.26719 * 4 3 2 6 6 C 1.50699 * 109.47084 * 66.04825 * 5 4 3 7 7 H 1.07996 * 120.00332 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00285 * 179.72456 * 6 5 4 9 9 N 1.31510 * 120.00344 * 180.27455 * 8 6 5 10 10 Si 1.86802 * 119.99592 * 0.27355 * 8 6 5 11 11 H 1.48499 * 109.47072 * 90.00173 * 10 8 6 12 12 H 1.48504 * 109.47150 * 210.00145 * 10 8 6 13 13 H 1.48497 * 109.47322 * 330.00131 * 10 8 6 14 14 C 1.46904 * 111.00214 * 296.31639 * 4 3 2 15 15 C 1.50697 * 109.46732 * 287.21576 * 14 4 3 16 16 O 1.21281 * 120.00105 * 354.26254 * 15 14 4 17 17 N 1.34776 * 119.99918 * 174.25908 * 15 14 4 18 18 C 1.47109 * 120.90714 * 0.02562 * 17 15 14 19 19 C 1.53115 * 109.11438 * 233.37275 * 18 17 15 20 20 C 1.53174 * 109.70286 * 306.16609 * 19 18 17 21 21 C 1.52780 * 109.17813 * 60.69589 * 20 19 18 22 22 H 1.09005 * 109.38723 * 57.70210 * 21 20 19 23 23 C 1.52797 * 110.70626 * 177.99564 * 21 20 19 24 24 C 1.53499 * 109.19940 * 180.32156 * 23 21 20 25 25 C 1.52911 * 110.18930 * 300.98451 * 24 23 21 26 26 C 1.53145 * 109.85494 * 58.66723 * 25 24 23 27 27 C 1.46680 * 120.90997 * 179.71816 * 17 15 14 28 28 H 1.09003 * 109.51136 * 244.91739 * 27 17 15 29 29 H 1.08000 * 119.99790 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00089 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00089 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47481 * 4.22840 * 3 2 1 33 33 H 1.09000 * 109.47411 * 244.22783 * 3 2 1 34 34 H 1.09002 * 109.47394 * 306.04534 * 5 4 3 35 35 H 1.09006 * 109.47342 * 186.04859 * 5 4 3 36 36 H 0.96995 * 120.00279 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.46915 * 47.21156 * 14 4 3 38 38 H 1.08993 * 109.47361 * 167.21648 * 14 4 3 39 39 H 1.08996 * 109.52967 * 353.26444 * 18 17 15 40 40 H 1.08999 * 109.52880 * 113.41551 * 18 17 15 41 41 H 1.08998 * 109.43212 * 66.24093 * 19 18 17 42 42 H 1.09004 * 109.43307 * 186.09908 * 19 18 17 43 43 H 1.08997 * 109.52226 * 180.60689 * 20 19 18 44 44 H 1.09001 * 109.52000 * 300.73254 * 20 19 18 45 45 H 1.09002 * 109.54280 * 300.91384 * 23 21 20 46 46 H 1.09003 * 109.54913 * 61.18271 * 23 21 20 47 47 H 1.09008 * 109.55757 * 180.56857 * 24 23 21 48 48 H 1.08998 * 108.92733 * 61.00569 * 24 23 21 49 49 H 1.08997 * 109.40801 * 298.54756 * 25 24 23 50 50 H 1.09006 * 109.40773 * 178.78672 * 25 24 23 51 51 H 1.09005 * 109.54510 * 180.56072 * 26 25 24 52 52 H 1.09003 * 109.62092 * 60.33292 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9829 1.3397 1.1451 5 6 3.9550 0.2407 1.0730 6 6 4.8567 0.4448 -0.1170 7 1 4.7210 1.3047 -0.7562 8 6 5.8583 -0.4635 -0.3870 9 7 6.6487 -0.2825 -1.4224 10 14 6.0927 -1.9512 0.7181 11 1 5.2727 -3.0799 0.2093 12 1 7.5251 -2.3430 0.7237 13 1 5.6666 -1.6134 2.1000 14 6 2.2444 1.3068 2.4146 15 6 1.5738 2.6374 2.6401 16 8 1.7823 3.5583 1.8789 17 7 0.7425 2.8041 3.6878 18 6 0.4758 1.7009 4.6237 19 6 -1.0372 1.4964 4.7397 20 6 -1.7104 2.8212 5.1112 21 6 -1.4316 3.8501 4.0168 22 1 -1.7956 3.4704 3.0620 23 6 -2.1298 5.1730 4.3285 24 6 -1.8340 6.1768 3.2055 25 6 -0.3262 6.3971 3.0783 26 6 0.3714 5.0652 2.7871 27 6 0.0841 4.0923 3.9297 28 1 0.4429 4.5138 4.8687 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3576 2.1322 0.0758 33 1 2.6321 1.3965 -0.9254 34 1 3.4256 -0.7065 0.9696 35 1 4.5536 0.2246 1.9839 36 1 7.3535 -0.9213 -1.6121 37 1 1.4894 0.5215 2.3754 38 1 2.9362 1.1054 3.2323 39 1 0.9396 0.7873 4.2518 40 1 0.8875 1.9462 5.6027 41 1 -1.4298 1.1452 3.7854 42 1 -1.2449 0.7552 5.5114 43 1 -2.7858 2.6699 5.2035 44 1 -1.3102 3.1796 6.0597 45 1 -3.2043 5.0081 4.4090 46 1 -1.7496 5.5734 5.2683 47 1 -2.3213 7.1263 3.4272 48 1 -2.2227 5.7819 2.2669 49 1 0.0592 6.8116 4.0098 50 1 -0.1294 7.0946 2.2641 51 1 1.4465 5.2263 2.7073 52 1 -0.0058 4.6513 1.8518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428866825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:38 Heat of formation + Delta-G solvation = -7.946724 kcal Electronic energy + Delta-G solvation = -29075.074026 eV Core-core repulsion = 25460.905415 eV Total energy + Delta-G solvation = -3614.168611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.78337 -38.45939 -36.77696 -36.02672 -33.15825 -32.90479 -32.18873 -30.61221 -30.14631 -28.37292 -26.83235 -25.37473 -24.00472 -22.91846 -22.69109 -21.05569 -20.66079 -20.05048 -19.20949 -18.44714 -16.79522 -16.47588 -16.08239 -15.69032 -15.26072 -14.96355 -14.84966 -14.49893 -14.33640 -14.18678 -13.81357 -13.71639 -13.51326 -13.01245 -12.88128 -12.79327 -12.59291 -12.34800 -12.16909 -11.94277 -11.65707 -11.50914 -11.38763 -11.34562 -11.16341 -11.02469 -10.93543 -10.84739 -10.73997 -10.66388 -10.49325 -10.27644 -10.10022 -9.86453 -9.42235 -8.91484 -8.69213 -8.57040 -8.42380 -7.34690 -6.03555 -4.00648 2.64341 2.96890 3.03933 3.26421 3.34790 3.35184 4.33263 4.41407 4.50354 4.53787 4.72344 4.76913 4.92393 4.96484 5.00140 5.03991 5.14751 5.24826 5.28037 5.34020 5.37901 5.41869 5.44132 5.50758 5.58893 5.61570 5.63161 5.68151 5.69864 5.72694 5.77312 5.85659 5.89419 5.97717 6.05036 6.06669 6.12022 6.17670 6.30591 6.44334 6.48451 6.63230 6.79375 6.81088 6.90170 7.05590 7.14060 7.51473 7.62071 7.88119 8.00203 8.58126 8.66489 9.07227 9.57311 11.09696 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.019151 B = 0.003460 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.697883 B = 8091.216234 C = 8457.591265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.088 3.912 4 N -0.499 5.499 5 C 0.160 3.840 6 C -0.505 4.505 7 H 0.082 0.918 8 C 0.069 3.931 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.031 3.969 15 C 0.519 3.481 16 O -0.506 6.506 17 N -0.619 5.619 18 C 0.108 3.892 19 C -0.135 4.135 20 C -0.113 4.113 21 C -0.100 4.100 22 H 0.073 0.927 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.106 4.106 27 C 0.156 3.844 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.097 0.903 34 H -0.010 1.010 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.787 6.264 15.262 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.184 4.184 3 C -0.040 4.040 4 N -0.221 5.221 5 C 0.034 3.966 6 C -0.544 4.544 7 H 0.100 0.900 8 C -0.133 4.133 9 N -0.538 5.538 10 Si 0.700 3.300 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.101 4.101 15 C 0.307 3.693 16 O -0.380 6.380 17 N -0.355 5.355 18 C -0.016 4.016 19 C -0.173 4.173 20 C -0.150 4.150 21 C -0.119 4.119 22 H 0.091 0.909 23 C -0.148 4.148 24 C -0.158 4.158 25 C -0.165 4.165 26 C -0.143 4.143 27 C 0.053 3.947 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.007 0.993 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.109 0.891 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.180 7.132 14.706 25.199 hybrid contribution -0.294 -1.892 0.698 2.039 sum -19.474 5.240 15.404 25.377 Atomic orbital electron populations 1.23688 0.95943 1.00768 1.04469 1.23982 0.96262 1.01624 0.96567 1.21347 0.94120 0.92330 0.96199 1.61926 1.14312 1.47410 0.98471 1.20278 0.90518 0.87154 0.98606 1.21001 1.13320 1.10334 1.09726 0.89959 1.24882 0.95612 0.97694 0.95076 1.69886 1.19443 1.36754 1.27734 0.86903 0.77583 0.83678 0.81791 1.20396 1.21150 1.19236 1.22066 0.97896 0.93625 0.96507 1.20821 0.78043 0.90748 0.79677 1.90700 1.60976 1.41480 1.44820 1.48211 1.46858 1.12237 1.28198 1.21702 0.95968 0.90380 0.93516 1.21912 0.95293 0.97722 1.02381 1.21525 1.00359 0.94775 0.98382 1.21631 0.95509 0.95328 0.99477 0.90892 1.21570 0.99788 0.94572 0.98830 1.21614 0.96745 0.98623 0.98828 1.21720 0.94803 0.98485 1.01468 1.22014 1.02470 0.92707 0.97154 1.21261 0.90920 0.83559 0.99004 0.91717 0.89420 0.89303 0.87125 0.91241 0.88475 0.99265 0.95491 0.92675 0.92682 0.88866 0.89616 0.91585 0.91408 0.90817 0.91811 0.91867 0.91861 0.92075 0.92292 0.92186 0.92483 0.91794 0.89075 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.14 14.32 29.02 0.42 -2.72 16 2 C -0.16 -2.92 7.51 -36.02 -0.27 -3.19 16 3 C 0.09 1.76 5.32 -4.98 -0.03 1.73 16 4 N -0.50 -10.59 4.28 -238.96 -1.02 -11.61 16 5 C 0.16 3.80 3.59 -4.98 -0.02 3.78 16 6 C -0.51 -14.29 9.07 -34.44 -0.31 -14.60 16 7 H 0.08 2.57 7.35 -52.49 -0.39 2.19 16 8 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 9 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 10 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 C 0.03 0.52 3.78 -4.97 -0.02 0.50 16 15 C 0.52 8.44 7.23 -10.99 -0.08 8.36 16 16 O -0.51 -9.77 10.81 5.56 0.06 -9.71 16 17 N -0.62 -7.77 2.96 -165.10 -0.49 -8.26 16 18 C 0.11 1.03 6.34 -3.65 -0.02 1.00 16 19 C -0.13 -1.07 6.06 -26.58 -0.16 -1.24 16 20 C -0.11 -0.87 5.26 -26.75 -0.14 -1.01 16 21 C -0.10 -0.93 2.04 -90.45 -0.18 -1.11 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 C -0.11 -0.88 5.32 -26.58 -0.14 -1.02 16 24 C -0.12 -1.05 5.91 -26.52 -0.16 -1.21 16 25 C -0.13 -1.30 5.92 -26.70 -0.16 -1.46 16 26 C -0.11 -1.38 3.66 -26.76 -0.10 -1.48 16 27 C 0.16 1.77 2.67 -67.55 -0.18 1.59 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.09 1.28 7.84 -52.49 -0.41 0.87 16 31 H 0.11 2.10 6.68 -52.49 -0.35 1.74 16 32 H 0.07 1.36 6.29 -51.93 -0.33 1.04 16 33 H 0.10 2.20 6.85 -51.93 -0.36 1.85 16 34 H -0.01 -0.23 5.59 -51.93 -0.29 -0.52 16 35 H 0.03 0.65 6.90 -51.93 -0.36 0.29 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 37 H 0.06 0.85 6.11 -51.93 -0.32 0.53 16 38 H 0.09 1.48 7.78 -51.93 -0.40 1.08 16 39 H 0.09 0.81 5.93 -51.93 -0.31 0.51 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.09 1.44 6.41 -51.93 -0.33 1.11 16 52 H 0.07 1.09 7.23 -51.93 -0.38 0.71 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -31.26 382.89 -10.53 -41.80 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -9.30 Total: 2.47 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.65 Total: -10.17 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.74 Total: -46.65 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.06 Total: -9.71 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.26 -10.53 -41.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428866825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.849 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds