Wall clock time and date at job start Tue Mar 31 2020 12:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47227 * 2 1 4 4 H 1.09006 * 109.46905 * 56.08721 * 3 2 1 5 5 C 1.53000 * 109.46868 * 176.08656 * 3 2 1 6 6 C 1.50703 * 109.46814 * 184.99935 * 5 3 2 7 7 C 1.38235 * 119.99997 * 269.72577 * 6 5 3 8 8 C 1.38237 * 120.00098 * 179.76577 * 7 6 5 9 9 C 1.38233 * 119.99701 * 0.50667 * 8 7 6 10 10 C 1.38237 * 120.00029 * 359.74667 * 9 8 7 11 11 C 1.38233 * 119.99941 * 89.99822 * 6 5 3 12 12 N 1.46896 * 109.46964 * 296.08659 * 3 2 1 13 13 C 1.46904 * 110.99888 * 305.72846 * 12 3 2 14 14 C 1.52994 * 109.47048 * 185.37520 * 13 12 3 15 15 H 1.08997 * 109.47088 * 60.00360 * 14 13 12 16 16 O 1.42900 * 109.47657 * 300.00044 * 14 13 12 17 17 C 1.53001 * 109.47110 * 180.02562 * 14 13 12 18 18 N 1.46906 * 109.47427 * 185.00288 * 17 14 13 19 19 C 1.46904 * 110.99894 * 66.04322 * 18 17 14 20 20 C 1.46891 * 111.00061 * 189.99930 * 18 17 14 21 21 C 1.50700 * 109.46942 * 169.99878 * 20 18 17 22 22 H 1.07996 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.37882 * 120.00267 * 179.97438 * 21 20 18 24 24 N 1.31506 * 120.00334 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99765 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47141 * 89.99671 * 25 23 21 27 27 H 1.48494 * 109.46978 * 209.99960 * 25 23 21 28 28 H 1.48507 * 109.47094 * 329.99882 * 25 23 21 29 29 H 1.08992 * 109.46999 * 185.11018 * 1 2 3 30 30 H 1.08995 * 109.47113 * 305.11599 * 1 2 3 31 31 H 1.09002 * 109.46737 * 65.10904 * 1 2 3 32 32 H 1.08994 * 109.47474 * 239.99635 * 2 1 3 33 33 H 1.09006 * 109.47017 * 119.99239 * 2 1 3 34 34 H 1.09002 * 109.46992 * 304.99402 * 5 3 2 35 35 H 1.09000 * 109.47146 * 64.99903 * 5 3 2 36 36 H 1.08006 * 119.99846 * 359.97438 * 7 6 5 37 37 H 1.07996 * 120.00059 * 180.22965 * 8 7 6 38 38 H 1.08003 * 120.00170 * 179.72455 * 9 8 7 39 39 H 1.08001 * 119.99996 * 179.97438 * 10 9 8 40 40 H 1.08005 * 120.00192 * 0.02562 * 11 6 5 41 41 H 1.00900 * 111.00016 * 69.68152 * 12 3 2 42 42 H 1.09006 * 109.47071 * 65.37714 * 13 12 3 43 43 H 1.08996 * 109.46971 * 305.37952 * 13 12 3 44 44 H 0.96699 * 114.00185 * 300.00463 * 16 14 13 45 45 H 1.09002 * 109.47462 * 65.00420 * 17 14 13 46 46 H 1.09006 * 109.47108 * 305.00121 * 17 14 13 47 47 H 1.08996 * 109.47120 * 183.95800 * 19 18 17 48 48 H 1.08998 * 109.47152 * 63.95394 * 19 18 17 49 49 H 1.09003 * 109.47021 * 303.95434 * 19 18 17 50 50 H 1.09001 * 109.47649 * 289.99652 * 20 18 17 51 51 H 1.09005 * 109.47412 * 49.99920 * 20 18 17 52 52 H 0.97009 * 120.00193 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6206 1.9762 0.8529 5 6 3.5669 1.4436 0.0985 6 6 4.0613 2.8618 0.2221 7 6 4.3703 3.5876 -0.9131 8 6 4.8191 4.8901 -0.8000 9 6 4.9690 5.4634 0.4489 10 6 4.6650 4.7359 1.5844 11 6 4.2112 3.4351 1.4710 12 7 1.6291 2.1072 -1.2439 13 6 2.0622 1.3393 -2.4190 14 6 1.7361 2.1254 -3.6904 15 1 2.2574 3.0824 -3.6695 16 8 0.3271 2.3518 -3.7623 17 6 2.1866 1.3253 -4.9143 18 7 1.9836 2.1294 -6.1268 19 6 2.8656 3.3042 -6.1332 20 6 2.1791 1.3178 -7.3355 21 6 1.7277 2.0983 -8.5430 22 1 1.3354 3.0975 -8.4245 23 6 1.8167 1.5372 -9.7994 24 7 1.4233 2.2185 -10.8532 25 14 2.4960 -0.1908 -10.0046 26 1 1.3856 -1.1729 -9.9161 27 1 3.1568 -0.3088 -11.3291 28 1 3.4854 -0.4644 -8.9315 29 1 -0.3633 -1.0235 0.0915 30 1 -0.3633 0.5911 0.8406 31 1 -0.3633 0.4326 -0.9322 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 3.8748 0.8738 0.9752 35 1 3.9891 0.9884 -0.7975 36 1 4.2577 3.1380 -1.8887 37 1 5.0570 5.4583 -1.6870 38 1 5.3239 6.4796 0.5376 39 1 4.7825 5.1837 2.5602 40 1 3.9744 2.8665 2.3582 41 1 0.6320 2.2605 -1.2595 42 1 1.5410 0.3821 -2.4398 43 1 3.1370 1.1665 -2.3641 44 1 -0.2009 1.5420 -3.7843 45 1 1.6017 0.4082 -4.9844 46 1 3.2432 1.0758 -4.8165 47 1 2.6458 3.9188 -7.0061 48 1 3.9050 2.9781 -6.1709 49 1 2.7004 3.8875 -5.2273 50 1 3.2350 1.0676 -7.4385 51 1 1.5946 0.4011 -7.2561 52 1 1.4855 1.8236 -11.7371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520567565.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:15 Heat of formation + Delta-G solvation = -27.391701 kcal Electronic energy + Delta-G solvation = -27659.342326 eV Core-core repulsion = 24044.330518 eV Total energy + Delta-G solvation = -3615.011808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.78312 -38.57394 -37.28482 -35.52123 -32.64907 -32.48929 -32.14660 -30.89831 -29.74268 -28.27989 -27.52296 -25.95447 -24.21023 -23.58112 -22.60756 -21.39665 -21.24885 -20.22263 -19.68559 -17.11887 -16.84036 -16.79039 -16.10455 -15.66600 -15.28025 -15.04660 -14.95139 -14.64097 -14.32494 -14.17154 -14.11682 -13.78187 -13.44640 -13.39355 -13.00631 -12.78645 -12.65500 -12.48820 -12.30873 -12.17882 -11.86738 -11.73393 -11.62770 -11.31436 -11.18978 -11.08053 -10.98943 -10.97381 -10.80767 -10.71299 -10.53064 -10.25837 -10.03242 -9.56781 -9.22580 -8.95097 -8.72707 -8.56439 -8.43312 -7.31838 -6.04062 -4.01122 1.32071 1.38763 3.27195 3.34721 3.35958 3.73235 3.91449 4.41744 4.45226 4.54721 4.69554 4.76714 4.79182 4.84899 4.90764 4.96664 5.03320 5.12481 5.15393 5.21131 5.28914 5.32920 5.37202 5.41940 5.46403 5.47589 5.57300 5.61662 5.63938 5.66761 5.74616 5.86652 5.92927 5.95772 6.00696 6.03477 6.11450 6.25522 6.36208 6.41090 6.49497 6.60890 6.69888 6.86080 6.91108 6.97619 7.00158 7.31406 7.59041 7.90746 7.92747 8.09583 8.67491 9.05952 9.57507 11.09175 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.002868 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.471933 B = 9760.199745 C =10912.893603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.163 4.163 3 C 0.094 3.906 4 H 0.081 0.919 5 C -0.077 4.077 6 C -0.065 4.065 7 C -0.090 4.090 8 C -0.120 4.120 9 C -0.128 4.128 10 C -0.125 4.125 11 C -0.124 4.124 12 N -0.669 5.669 13 C 0.021 3.979 14 C 0.116 3.884 15 H 0.104 0.896 16 O -0.543 6.543 17 C 0.022 3.978 18 N -0.520 5.520 19 C 0.036 3.964 20 C 0.162 3.838 21 C -0.507 4.507 22 H 0.082 0.918 23 C 0.067 3.933 24 N -0.900 5.900 25 Si 0.874 3.126 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.269 1.269 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.349 0.651 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.364 0.636 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.079 0.921 48 H 0.009 0.991 49 H 0.051 0.949 50 H -0.014 1.014 51 H 0.021 0.979 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.596 -2.063 27.805 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 C -0.016 4.016 4 H 0.100 0.900 5 C -0.114 4.114 6 C -0.065 4.065 7 C -0.108 4.108 8 C -0.138 4.138 9 C -0.146 4.146 10 C -0.143 4.143 11 C -0.142 4.142 12 N -0.301 5.301 13 C -0.109 4.109 14 C 0.056 3.944 15 H 0.121 0.879 16 O -0.346 6.346 17 C -0.108 4.108 18 N -0.243 5.243 19 C -0.112 4.112 20 C 0.036 3.964 21 C -0.545 4.545 22 H 0.100 0.900 23 C -0.134 4.134 24 N -0.540 5.540 25 Si 0.702 3.298 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.194 1.194 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.168 0.832 42 H 0.053 0.947 43 H 0.096 0.904 44 H 0.210 0.790 45 H 0.086 0.914 46 H 0.046 0.954 47 H 0.097 0.903 48 H 0.028 0.972 49 H 0.069 0.931 50 H 0.004 0.996 51 H 0.039 0.961 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.828 -0.849 27.580 28.012 hybrid contribution 0.457 -2.647 -0.294 2.702 sum 5.285 -3.495 27.286 28.012 Atomic orbital electron populations 1.21768 0.95508 1.01851 1.01969 1.22307 0.96566 0.98676 1.02627 1.21596 0.94359 0.92217 0.93477 0.90041 1.20718 0.94940 0.93311 1.02460 1.19640 0.97967 0.95857 0.92991 1.20995 0.97375 0.94154 0.98240 1.21181 0.99610 0.95534 0.97445 1.21094 1.01000 0.99713 0.92802 1.21041 1.00264 0.94695 0.98283 1.20966 1.00951 0.95508 0.96809 1.60448 1.21111 1.48211 1.00280 1.22768 1.01293 0.95336 0.91537 1.21974 0.82638 0.99433 0.90336 0.87877 1.86641 1.16445 1.34978 1.96582 1.22782 0.98690 0.96918 0.92437 1.61857 1.53343 1.08079 1.01049 1.22282 0.92928 0.94055 1.01956 1.20195 0.94202 0.93483 0.88540 1.21043 1.41480 1.03270 0.88736 0.90044 1.24905 0.95197 0.97393 0.95893 1.69894 1.48017 1.37476 0.98568 0.86877 0.79692 0.85669 0.77573 1.20189 1.21192 1.19406 0.92652 0.92589 0.92590 0.91405 0.91691 0.90984 0.90895 0.86254 0.86274 0.86588 0.86645 0.86734 0.83168 0.94673 0.90389 0.78998 0.91423 0.95414 0.90272 0.97207 0.93073 0.99607 0.96085 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.55 37.16 0.35 -0.72 16 2 C -0.16 -1.16 5.00 -26.73 -0.13 -1.29 16 3 C 0.09 0.75 2.53 -67.71 -0.17 0.58 16 4 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 5 C -0.08 -0.63 4.74 -27.88 -0.13 -0.76 16 6 C -0.06 -0.63 4.95 -104.62 -0.52 -1.15 16 7 C -0.09 -0.97 9.32 -39.58 -0.37 -1.34 16 8 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 9 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 10 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 11 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 12 N -0.67 -6.36 5.66 -106.72 -0.60 -6.96 16 13 C 0.02 0.21 4.43 -3.83 -0.02 0.19 16 14 C 0.12 1.55 3.20 -26.73 -0.09 1.46 16 15 H 0.10 1.53 6.26 -51.93 -0.33 1.20 16 16 O -0.54 -7.86 12.73 -35.23 -0.45 -8.31 16 17 C 0.02 0.35 4.59 -3.82 -0.02 0.33 16 18 N -0.52 -10.88 4.70 -244.36 -1.15 -12.02 16 19 C 0.04 0.71 9.17 60.07 0.55 1.26 16 20 C 0.16 3.96 3.79 -4.98 -0.02 3.94 16 21 C -0.51 -14.58 9.07 -34.44 -0.31 -14.89 16 22 H 0.08 2.56 7.35 -52.49 -0.39 2.18 16 23 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 24 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 25 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.42 7.25 -51.93 -0.38 0.04 16 32 H 0.07 0.53 6.22 -51.93 -0.32 0.21 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.07 0.62 6.17 -51.93 -0.32 0.30 16 36 H 0.12 1.31 7.69 -52.48 -0.40 0.91 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.11 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.35 3.44 7.18 -39.29 -0.28 3.16 16 42 H 0.04 0.34 6.46 -51.93 -0.34 0.00 16 43 H 0.08 0.78 5.83 -51.93 -0.30 0.48 16 44 H 0.36 4.20 9.04 45.56 0.41 4.61 16 45 H 0.07 1.05 7.93 -51.93 -0.41 0.64 16 46 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 47 H 0.08 1.73 6.86 -51.93 -0.36 1.38 16 48 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 49 H 0.05 0.87 6.21 -51.93 -0.32 0.55 16 50 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 51 H 0.02 0.51 7.36 -51.93 -0.38 0.13 16 52 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -31.93 403.35 -10.86 -42.79 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -8.30 Total: 5.47 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -2.54 Total: -16.90 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.98 Total: -46.03 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.45 Total: -8.31 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.93 -10.86 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520567565.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.402 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds