Wall clock time and date at job start Tue Mar 31 2020 12:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47227 * 2 1 4 4 H 1.09006 * 109.46905 * 56.08721 * 3 2 1 5 5 C 1.53000 * 109.46868 * 176.08656 * 3 2 1 6 6 C 1.50703 * 109.46814 * 184.99935 * 5 3 2 7 7 C 1.38235 * 119.99997 * 269.72577 * 6 5 3 8 8 C 1.38237 * 120.00098 * 179.76577 * 7 6 5 9 9 C 1.38233 * 119.99701 * 0.50667 * 8 7 6 10 10 C 1.38237 * 120.00029 * 359.74667 * 9 8 7 11 11 C 1.38233 * 119.99941 * 89.99822 * 6 5 3 12 12 N 1.46896 * 109.46964 * 296.08659 * 3 2 1 13 13 C 1.46904 * 110.99888 * 305.72846 * 12 3 2 14 14 C 1.52994 * 109.47048 * 185.37520 * 13 12 3 15 15 H 1.08997 * 109.47088 * 60.00360 * 14 13 12 16 16 O 1.42900 * 109.47657 * 300.00044 * 14 13 12 17 17 C 1.53001 * 109.47110 * 180.02562 * 14 13 12 18 18 N 1.46906 * 109.47427 * 185.00288 * 17 14 13 19 19 C 1.46904 * 110.99894 * 66.04322 * 18 17 14 20 20 C 1.46891 * 111.00061 * 189.99930 * 18 17 14 21 21 C 1.50700 * 109.46942 * 169.99878 * 20 18 17 22 22 H 1.07996 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.37882 * 120.00267 * 179.97438 * 21 20 18 24 24 N 1.31506 * 120.00334 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99765 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47141 * 89.99671 * 25 23 21 27 27 H 1.48494 * 109.46978 * 209.99960 * 25 23 21 28 28 H 1.48507 * 109.47094 * 329.99882 * 25 23 21 29 29 H 1.08992 * 109.46999 * 185.11018 * 1 2 3 30 30 H 1.08995 * 109.47113 * 305.11599 * 1 2 3 31 31 H 1.09002 * 109.46737 * 65.10904 * 1 2 3 32 32 H 1.08994 * 109.47474 * 239.99635 * 2 1 3 33 33 H 1.09006 * 109.47017 * 119.99239 * 2 1 3 34 34 H 1.09002 * 109.46992 * 304.99402 * 5 3 2 35 35 H 1.09000 * 109.47146 * 64.99903 * 5 3 2 36 36 H 1.08006 * 119.99846 * 359.97438 * 7 6 5 37 37 H 1.07996 * 120.00059 * 180.22965 * 8 7 6 38 38 H 1.08003 * 120.00170 * 179.72455 * 9 8 7 39 39 H 1.08001 * 119.99996 * 179.97438 * 10 9 8 40 40 H 1.08005 * 120.00192 * 0.02562 * 11 6 5 41 41 H 1.00900 * 111.00016 * 69.68152 * 12 3 2 42 42 H 1.09006 * 109.47071 * 65.37714 * 13 12 3 43 43 H 1.08996 * 109.46971 * 305.37952 * 13 12 3 44 44 H 0.96699 * 114.00185 * 300.00463 * 16 14 13 45 45 H 1.09002 * 109.47462 * 65.00420 * 17 14 13 46 46 H 1.09006 * 109.47108 * 305.00121 * 17 14 13 47 47 H 1.08996 * 109.47120 * 183.95800 * 19 18 17 48 48 H 1.08998 * 109.47152 * 63.95394 * 19 18 17 49 49 H 1.09003 * 109.47021 * 303.95434 * 19 18 17 50 50 H 1.09001 * 109.47649 * 289.99652 * 20 18 17 51 51 H 1.09005 * 109.47412 * 49.99920 * 20 18 17 52 52 H 0.97009 * 120.00193 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6206 1.9762 0.8529 5 6 3.5669 1.4436 0.0985 6 6 4.0613 2.8618 0.2221 7 6 4.3703 3.5876 -0.9131 8 6 4.8191 4.8901 -0.8000 9 6 4.9690 5.4634 0.4489 10 6 4.6650 4.7359 1.5844 11 6 4.2112 3.4351 1.4710 12 7 1.6291 2.1072 -1.2439 13 6 2.0622 1.3393 -2.4190 14 6 1.7361 2.1254 -3.6904 15 1 2.2574 3.0824 -3.6695 16 8 0.3271 2.3518 -3.7623 17 6 2.1866 1.3253 -4.9143 18 7 1.9836 2.1294 -6.1268 19 6 2.8656 3.3042 -6.1332 20 6 2.1791 1.3178 -7.3355 21 6 1.7277 2.0983 -8.5430 22 1 1.3354 3.0975 -8.4245 23 6 1.8167 1.5372 -9.7994 24 7 1.4233 2.2185 -10.8532 25 14 2.4960 -0.1908 -10.0046 26 1 1.3856 -1.1729 -9.9161 27 1 3.1568 -0.3088 -11.3291 28 1 3.4854 -0.4644 -8.9315 29 1 -0.3633 -1.0235 0.0915 30 1 -0.3633 0.5911 0.8406 31 1 -0.3633 0.4326 -0.9322 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 3.8748 0.8738 0.9752 35 1 3.9891 0.9884 -0.7975 36 1 4.2577 3.1380 -1.8887 37 1 5.0570 5.4583 -1.6870 38 1 5.3239 6.4796 0.5376 39 1 4.7825 5.1837 2.5602 40 1 3.9744 2.8665 2.3582 41 1 0.6320 2.2605 -1.2595 42 1 1.5410 0.3821 -2.4398 43 1 3.1370 1.1665 -2.3641 44 1 -0.2009 1.5420 -3.7843 45 1 1.6017 0.4082 -4.9844 46 1 3.2432 1.0758 -4.8165 47 1 2.6458 3.9188 -7.0061 48 1 3.9050 2.9781 -6.1709 49 1 2.7004 3.8875 -5.2273 50 1 3.2350 1.0676 -7.4385 51 1 1.5946 0.4011 -7.2561 52 1 1.4855 1.8236 -11.7371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520567565.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:14 Heat of formation + Delta-G solvation = -49.940461 kcal Electronic energy + Delta-G solvation = -27660.320114 eV Core-core repulsion = 24044.330518 eV Total energy + Delta-G solvation = -3615.989596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.52222 -39.56618 -38.34486 -36.88669 -34.60598 -33.35267 -32.93145 -31.61385 -31.02387 -29.57325 -28.76167 -27.29084 -25.28514 -24.57572 -23.34193 -22.72443 -21.98028 -21.76347 -20.44741 -19.02242 -17.88037 -17.54494 -17.16533 -16.78072 -16.39386 -16.07741 -15.95889 -15.94196 -15.63559 -15.32950 -14.94956 -14.85494 -14.54045 -14.38624 -14.14342 -13.96938 -13.76024 -13.49223 -13.48118 -13.16344 -12.99984 -12.82297 -12.53792 -12.48804 -12.42068 -12.39337 -12.28608 -11.92200 -11.87039 -11.76101 -11.68266 -11.53775 -11.50327 -11.35494 -10.78970 -10.71366 -9.68666 -9.44699 -9.14576 -8.96451 -8.28369 -6.32124 0.59968 0.65330 1.33518 1.35604 1.46062 2.33787 2.95603 3.01639 3.04817 3.44731 3.71503 3.83693 3.95923 4.08841 4.12122 4.16541 4.24935 4.27355 4.29743 4.33331 4.39633 4.44546 4.52421 4.53655 4.64895 4.66149 4.71918 4.76283 4.76838 4.85259 4.88256 4.90458 4.96153 5.01400 5.07352 5.12501 5.14350 5.26294 5.28502 5.32227 5.33818 5.42464 5.52341 5.70095 5.76074 5.88288 5.98359 6.19905 6.26947 6.35276 6.56809 6.67029 6.74653 7.00647 7.31425 8.88592 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.014660 B = 0.002868 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.471933 B = 9760.199745 C =10912.893603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.156 4.156 3 C 0.100 3.900 4 H 0.082 0.918 5 C -0.074 4.074 6 C -0.070 4.070 7 C -0.107 4.107 8 C -0.138 4.138 9 C -0.139 4.139 10 C -0.130 4.130 11 C -0.130 4.130 12 N -0.676 5.676 13 C 0.037 3.963 14 C 0.127 3.873 15 H 0.087 0.913 16 O -0.562 6.562 17 C 0.022 3.978 18 N -0.539 5.539 19 C 0.043 3.957 20 C 0.172 3.828 21 C -0.517 4.517 22 H 0.034 0.966 23 C 0.005 3.995 24 N -0.950 5.950 25 Si 0.950 3.050 26 H -0.263 1.263 27 H -0.282 1.282 28 H -0.251 1.251 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.347 0.653 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.377 0.623 45 H 0.077 0.923 46 H 0.040 0.960 47 H 0.043 0.957 48 H 0.019 0.981 49 H 0.074 0.926 50 H -0.014 1.014 51 H 0.029 0.971 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 -4.369 30.431 31.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C -0.010 4.010 4 H 0.100 0.900 5 C -0.111 4.111 6 C -0.070 4.070 7 C -0.125 4.125 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.148 4.148 11 C -0.148 4.148 12 N -0.308 5.308 13 C -0.093 4.093 14 C 0.068 3.932 15 H 0.105 0.895 16 O -0.367 6.367 17 C -0.107 4.107 18 N -0.263 5.263 19 C -0.105 4.105 20 C 0.045 3.955 21 C -0.555 4.555 22 H 0.052 0.948 23 C -0.192 4.192 24 N -0.591 5.591 25 Si 0.773 3.227 26 H -0.188 1.188 27 H -0.208 1.208 28 H -0.174 1.174 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.166 0.834 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.225 0.775 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.093 0.907 50 H 0.004 0.996 51 H 0.047 0.953 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.542 -3.156 30.243 30.908 hybrid contribution 0.187 -1.795 -1.052 2.089 sum 5.729 -4.952 29.191 30.157 Atomic orbital electron populations 1.21758 0.95464 1.02035 1.01753 1.22242 0.96502 0.97855 1.02946 1.21565 0.94225 0.92690 0.92515 0.90033 1.20738 0.94848 0.92494 1.03067 1.19845 0.97707 0.96588 0.92900 1.21058 0.98457 0.94551 0.98448 1.21355 1.00319 0.95852 0.98125 1.21341 1.01085 1.00583 0.92716 1.21366 0.99570 0.94841 0.99046 1.21265 1.00455 0.95760 0.97326 1.60408 1.21005 1.48695 1.00698 1.22528 1.01614 0.95071 0.90127 1.21812 0.82018 0.98647 0.90771 0.89545 1.86607 1.17106 1.36351 1.96656 1.22903 0.99740 0.96984 0.91067 1.61735 1.54227 1.08651 1.01711 1.22174 0.93206 0.93667 1.01468 1.19951 0.93811 0.93322 0.88399 1.21280 1.41235 1.01935 0.91092 0.94775 1.25896 0.95463 1.02524 0.95287 1.70060 1.49698 1.39968 0.99324 0.85673 0.79548 0.79384 0.78047 1.18790 1.20772 1.17450 0.92349 0.92321 0.93241 0.91840 0.90575 0.89302 0.91273 0.87031 0.86198 0.85203 0.84583 0.84691 0.83383 0.93512 0.89978 0.77514 0.90482 0.94222 0.93821 0.96287 0.90727 0.99595 0.95278 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.55 71.98 0.69 -1.11 16 2 C -0.16 -1.80 5.00 30.60 0.15 -1.65 16 3 C 0.10 1.36 2.53 44.92 0.11 1.48 16 4 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 5 C -0.07 -1.03 4.74 29.85 0.14 -0.89 16 6 C -0.07 -1.27 4.95 -19.87 -0.10 -1.36 16 7 C -0.11 -2.27 9.32 22.27 0.21 -2.06 16 8 C -0.14 -2.90 10.05 22.27 0.22 -2.68 16 9 C -0.14 -2.57 10.05 22.27 0.22 -2.35 16 10 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 11 C -0.13 -2.12 9.70 22.27 0.22 -1.91 16 12 N -0.68 -11.73 5.66 -491.56 -2.78 -14.51 16 13 C 0.04 0.67 4.43 86.30 0.38 1.05 16 14 C 0.13 3.23 3.20 30.59 0.10 3.33 16 15 H 0.09 2.50 6.26 -2.39 -0.01 2.49 16 16 O -0.56 -15.69 12.73 -148.98 -1.90 -17.58 16 17 C 0.02 0.67 4.59 86.30 0.40 1.06 16 18 N -0.54 -22.44 4.70 -927.03 -4.36 -26.79 16 19 C 0.04 1.71 9.17 127.69 1.17 2.88 16 20 C 0.17 8.33 3.79 85.56 0.32 8.65 16 21 C -0.52 -30.59 9.07 25.60 0.23 -30.36 16 22 H 0.03 2.28 7.35 -2.91 -0.02 2.26 16 23 C 0.01 0.31 5.47 84.66 0.46 0.77 16 24 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 25 Si 0.95 44.19 27.47 68.60 1.88 46.07 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 28 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.64 7.25 -2.39 -0.02 0.63 16 32 H 0.06 0.81 6.22 -2.39 -0.01 0.79 16 33 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.09 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.07 1.03 6.17 -2.39 -0.01 1.02 16 36 H 0.11 2.44 7.69 -2.91 -0.02 2.42 16 37 H 0.12 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.35 6.31 7.18 -89.69 -0.64 5.66 16 42 H 0.05 0.76 6.46 -2.38 -0.02 0.75 16 43 H 0.08 1.47 5.83 -2.39 -0.01 1.45 16 44 H 0.38 8.15 9.04 -74.06 -0.67 7.48 16 45 H 0.08 2.20 7.93 -2.39 -0.02 2.18 16 46 H 0.04 1.13 8.12 -2.38 -0.02 1.11 16 47 H 0.04 2.01 6.86 -2.39 -0.02 1.99 16 48 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.07 2.57 6.21 -2.39 -0.01 2.55 16 50 H -0.01 -0.65 7.18 -2.39 -0.02 -0.67 16 51 H 0.03 1.36 7.36 -2.38 -0.02 1.34 16 52 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -70.54 403.35 -2.16 -72.70 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -0.47 Total: 27.25 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 5.16 Total: -27.07 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -6.84 Total: -101.36 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -1.90 Total: -17.58 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -70.54 -2.16 -72.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520567565.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.761 kcal (2) G-P(sol) polarization free energy of solvation -70.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds