Wall clock time and date at job start Tue Mar 31 2020 12:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99952 * 2 1 4 4 C 1.52997 * 109.46948 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47284 * 174.75550 * 4 3 2 6 6 N 1.46895 * 109.47235 * 294.76184 * 4 3 2 7 7 C 1.46900 * 110.99837 * 227.89965 * 6 4 3 8 8 C 1.50699 * 109.47164 * 174.91818 * 7 6 4 9 9 C 1.38292 * 119.92236 * 90.00326 * 8 7 6 10 10 C 1.38104 * 120.06942 * 179.70725 * 9 8 7 11 11 C 1.38903 * 119.93141 * 0.26856 * 10 9 8 12 12 N 1.39673 * 120.07839 * 179.97438 * 11 10 9 13 13 C 1.46504 * 119.99770 * 0.02562 * 12 11 10 14 14 C 1.46500 * 120.00330 * 179.97438 * 12 11 10 15 15 C 1.50703 * 109.47091 * 89.99892 * 14 12 11 16 16 H 1.07994 * 119.99824 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99854 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00174 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99523 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47607 * 60.00253 * 19 17 15 21 21 H 1.48501 * 109.46862 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47399 * 299.99476 * 19 17 15 23 23 C 1.38914 * 119.85103 * 0.02562 * 11 10 9 24 24 C 1.38108 * 119.92256 * 0.02562 * 23 11 10 25 25 C 1.53003 * 109.47205 * 54.75981 * 4 3 2 26 26 C 1.53006 * 109.47114 * 61.07220 * 25 4 3 27 27 C 1.52999 * 109.47326 * 181.07001 * 25 4 3 28 28 H 1.08998 * 109.47473 * 300.00748 * 1 2 3 29 29 H 1.09001 * 109.47262 * 60.00085 * 1 2 3 30 30 H 1.09002 * 109.47696 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46969 * 59.99688 * 3 2 1 32 32 H 1.09005 * 109.46754 * 299.99298 * 3 2 1 33 33 H 1.00897 * 111.00603 * 103.94433 * 6 4 3 34 34 H 1.09003 * 109.47246 * 54.92111 * 7 6 4 35 35 H 1.08998 * 109.47522 * 294.92298 * 7 6 4 36 36 H 1.07993 * 119.96094 * 359.97389 * 9 8 7 37 37 H 1.08005 * 120.03387 * 180.30009 * 10 9 8 38 38 H 1.08997 * 109.46886 * 90.00406 * 13 12 11 39 39 H 1.09003 * 109.46609 * 209.99907 * 13 12 11 40 40 H 1.08997 * 109.47112 * 329.99904 * 13 12 11 41 41 H 1.09000 * 109.47623 * 210.00027 * 14 12 11 42 42 H 1.09007 * 109.47166 * 330.00115 * 14 12 11 43 43 H 0.96998 * 119.99743 * 179.97438 * 18 17 15 44 44 H 1.07993 * 120.04305 * 180.02562 * 23 11 10 45 45 H 1.07999 * 119.96416 * 180.02562 * 24 23 11 46 46 H 1.08998 * 109.47181 * 301.06920 * 25 4 3 47 47 H 1.09003 * 109.46878 * 174.01354 * 26 25 4 48 48 H 1.09003 * 109.46872 * 294.00777 * 26 25 4 49 49 H 1.08997 * 109.46927 * 54.00881 * 26 25 4 50 50 H 1.09008 * 109.46882 * 64.37310 * 27 25 4 51 51 H 1.08993 * 109.47475 * 184.37070 * 27 25 4 52 52 H 1.08995 * 109.47348 * 304.37435 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1761 -0.0933 6 7 3.9772 0.5679 1.2585 7 6 5.0827 1.3276 1.8574 8 6 5.4252 0.7404 3.2024 9 6 6.3706 -0.2645 3.2959 10 6 6.6911 -0.8006 4.5276 11 6 6.0587 -0.3333 5.6726 12 7 6.3801 -0.8737 6.9199 13 6 7.3858 -1.9342 7.0215 14 6 5.7125 -0.3793 8.1265 15 6 4.4663 -1.1884 8.3784 16 1 4.1986 -1.9908 7.7071 17 6 3.6679 -0.9040 9.4659 18 7 3.9936 0.0736 10.2832 19 14 2.1236 -1.9074 9.7785 20 1 2.4896 -3.3343 9.9656 21 1 1.4461 -1.4053 11.0008 22 1 1.2067 -1.7797 8.6172 23 6 5.1050 0.6719 5.5745 24 6 4.7884 1.2030 4.3395 25 6 3.9786 0.3144 -1.1772 26 6 3.5417 0.9703 -2.4887 27 6 5.5018 0.1716 -1.1611 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 4.2364 -0.3968 1.1169 34 1 4.7834 2.3684 1.9810 35 1 5.9547 1.2753 1.2055 36 1 6.8619 -0.6273 2.4053 37 1 7.4332 -1.5820 4.6005 38 1 8.3703 -1.4888 7.1642 39 1 7.1513 -2.5771 7.8700 40 1 7.3838 -2.5258 6.1060 41 1 6.3854 -0.4737 8.9788 42 1 5.4441 0.6684 7.9899 43 1 3.4316 0.2738 11.0480 44 1 4.6117 1.0378 6.4627 45 1 4.0474 1.9848 4.2624 46 1 3.5204 -0.6710 -1.0935 47 1 3.9481 0.4077 -3.3292 48 1 2.4532 0.9756 -2.5473 49 1 3.9124 1.9947 -2.5237 50 1 5.8069 -0.3651 -0.2627 51 1 5.8241 -0.3827 -2.0424 52 1 5.9595 1.1607 -1.1665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742373808.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:27 Heat of formation + Delta-G solvation = -39.953190 kcal Electronic energy + Delta-G solvation = -27220.952827 eV Core-core repulsion = 23605.396312 eV Total energy + Delta-G solvation = -3615.556515 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.51469 -39.70341 -37.85870 -37.06549 -34.91856 -34.19580 -31.86543 -31.38995 -29.85890 -29.53907 -27.77009 -27.24312 -26.54339 -25.50221 -23.87638 -23.06026 -22.98123 -21.18550 -20.61538 -18.63597 -18.10232 -17.25883 -17.14698 -16.86809 -16.48234 -16.34307 -15.97452 -15.80561 -15.53349 -15.33503 -14.89316 -14.61521 -14.51164 -14.28112 -14.02554 -13.92304 -13.63998 -13.29175 -13.23326 -13.13547 -13.06161 -12.95500 -12.76654 -12.68029 -12.57224 -12.52512 -12.30907 -12.23750 -12.03414 -11.81612 -11.72106 -11.44031 -11.40664 -11.34806 -10.64316 -10.45361 -10.36277 -9.64006 -9.11025 -8.35969 -7.78578 -6.37625 0.73788 0.87258 1.36249 1.38763 1.46787 2.34220 2.64756 3.02144 3.05684 3.06859 3.54096 3.84002 4.00362 4.08263 4.18689 4.21484 4.25614 4.42920 4.45088 4.45709 4.54685 4.61639 4.63749 4.67441 4.70880 4.74313 4.75661 4.78666 4.84995 4.88975 4.90217 4.92987 4.97493 5.02348 5.03921 5.07646 5.14848 5.21431 5.31118 5.34947 5.45770 5.50449 5.60532 5.68738 5.71057 5.97115 6.07334 6.19202 6.26707 6.45316 6.51131 6.59873 6.83012 6.95531 7.34176 8.82943 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.002921 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.912015 B = 9583.906689 C =11074.930678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.400 6.400 3 C 0.072 3.928 4 C 0.095 3.905 5 H 0.091 0.909 6 N -0.686 5.686 7 C 0.120 3.880 8 C -0.155 4.155 9 C -0.061 4.061 10 C -0.217 4.217 11 C 0.212 3.788 12 N -0.633 5.633 13 C 0.098 3.902 14 C 0.267 3.733 15 C -0.542 4.542 16 H 0.048 0.952 17 C 0.013 3.987 18 N -0.927 5.927 19 Si 0.961 3.039 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.275 1.275 23 C -0.218 4.218 24 C -0.057 4.057 25 C -0.108 4.108 26 C -0.140 4.140 27 C -0.149 4.149 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.343 0.657 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.267 0.733 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.061 0.939 50 H 0.049 0.951 51 H 0.062 0.938 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 2.156 -25.967 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.006 4.006 4 C -0.015 4.015 5 H 0.109 0.891 6 N -0.318 5.318 7 C -0.008 4.008 8 C -0.158 4.158 9 C -0.080 4.080 10 C -0.240 4.240 11 C 0.107 3.893 12 N -0.341 5.341 13 C -0.044 4.044 14 C 0.146 3.854 15 C -0.581 4.581 16 H 0.066 0.934 17 C -0.186 4.186 18 N -0.566 5.566 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.200 1.200 23 C -0.241 4.241 24 C -0.076 4.076 25 C -0.128 4.128 26 C -0.198 4.198 27 C -0.206 4.206 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.163 0.837 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.160 0.840 37 H 0.150 0.850 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.136 0.864 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.081 0.919 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.591 2.307 -25.201 25.314 hybrid contribution -0.542 -0.399 0.620 0.915 sum 0.049 1.909 -24.581 24.655 Atomic orbital electron populations 1.22800 0.80825 1.03073 1.00124 1.87871 1.20079 1.28562 1.95371 1.22710 0.93743 0.84498 0.99620 1.21757 0.93161 0.98496 0.88038 0.89109 1.60456 1.38915 1.06299 1.26087 1.20757 0.92472 0.96869 0.90734 1.19559 1.00394 1.01048 0.94791 1.20909 0.96027 0.94504 0.96552 1.20783 1.06114 1.05740 0.91370 1.18209 0.93102 0.91967 0.86007 1.46957 1.42741 1.39912 1.04513 1.21595 0.90475 0.89963 1.02408 1.18753 0.91113 0.93794 0.81780 1.21753 1.09046 1.17228 1.10070 0.93395 1.25776 1.01063 0.96313 0.95494 1.70028 1.40098 1.30858 1.15660 0.85571 0.79175 0.79143 0.77593 1.19257 1.20239 1.20004 1.20774 1.02950 1.02000 0.98356 1.20772 0.97276 0.98337 0.91229 1.21537 0.96173 0.99796 0.95295 1.21786 1.01150 1.00768 0.96054 1.21910 0.94847 1.02001 1.01885 0.94672 0.92984 0.89418 0.94332 0.91851 0.83738 0.90785 0.92993 0.84041 0.84974 0.92905 0.92601 0.90350 0.97264 0.97222 0.92360 0.88975 0.86413 0.91533 0.92290 0.92808 0.92040 0.93147 0.91929 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -8.95 9.74 -148.98 -1.45 -10.40 16 3 C 0.07 1.35 5.30 71.98 0.38 1.73 16 4 C 0.10 1.67 2.19 44.92 0.10 1.77 16 5 H 0.09 1.38 7.51 -2.39 -0.02 1.36 16 6 N -0.69 -15.27 5.98 -495.59 -2.96 -18.23 16 7 C 0.12 2.62 5.24 85.56 0.45 3.07 16 8 C -0.16 -4.54 5.44 -19.84 -0.11 -4.65 16 9 C -0.06 -1.73 9.69 22.25 0.22 -1.51 16 10 C -0.22 -7.30 9.21 22.40 0.21 -7.09 16 11 C 0.21 8.90 6.55 38.21 0.25 9.15 16 12 N -0.63 -28.53 2.99 -726.55 -2.17 -30.70 16 13 C 0.10 3.51 10.19 127.77 1.30 4.81 16 14 C 0.27 14.43 4.91 85.63 0.42 14.85 16 15 C -0.54 -31.30 9.39 25.60 0.24 -31.06 16 16 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 17 C 0.01 0.73 5.46 84.65 0.46 1.19 16 18 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 19 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 23 C -0.22 -9.50 9.21 22.40 0.21 -9.30 16 24 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 25 C -0.11 -1.65 2.13 -10.79 -0.02 -1.67 16 26 C -0.14 -1.71 8.69 71.98 0.63 -1.09 16 27 C -0.15 -2.01 8.04 71.98 0.58 -1.43 16 28 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.94 6.88 -2.38 -0.02 0.92 16 33 H 0.34 7.94 7.37 -89.70 -0.66 7.28 16 34 H 0.07 1.58 7.96 -2.39 -0.02 1.56 16 35 H 0.05 0.94 6.80 -2.39 -0.02 0.92 16 36 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 37 H 0.13 3.84 6.14 -2.91 -0.02 3.82 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 40 H 0.08 2.37 6.20 -2.39 -0.01 2.35 16 41 H 0.01 0.53 8.07 -2.39 -0.02 0.51 16 42 H 0.01 0.57 6.20 -2.38 -0.01 0.56 16 43 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.09 4.64 6.14 -2.91 -0.02 4.62 16 45 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 46 H 0.07 1.27 7.52 -2.39 -0.02 1.25 16 47 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.05 0.69 6.91 -2.39 -0.02 0.67 16 49 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 50 H 0.05 0.74 6.56 -2.38 -0.02 0.73 16 51 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.06 0.74 8.12 -2.39 -0.02 0.72 16 Total: -1.00 -66.31 409.01 2.71 -63.60 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.22 Total: 25.04 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 6.77 Total: -21.30 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -4.85 Total: -104.08 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -1.45 Total: -10.40 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -66.31 2.71 -63.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742373808.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.646 kcal (2) G-P(sol) polarization free energy of solvation -66.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds