Wall clock time and date at job start Tue Mar 31 2020 12:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47384 * 2 1 4 4 H 1.09004 * 110.81456 * 51.66350 * 3 2 1 5 5 C 1.54892 * 110.75607 * 288.32675 * 3 2 1 6 6 C 1.54259 * 104.19372 * 203.74261 * 5 3 2 7 7 C 1.53873 * 106.60311 * 23.60990 * 6 5 3 8 8 C 1.54272 * 106.59688 * 359.97438 * 7 6 5 9 9 H 1.08998 * 110.48402 * 95.20187 * 8 7 6 10 10 C 1.50694 * 110.48584 * 217.71202 * 8 7 6 11 11 O 1.21280 * 119.99872 * 118.54540 * 10 8 7 12 12 N 1.34783 * 119.99933 * 298.54654 * 10 8 7 13 13 C 1.46876 * 120.46644 * 359.72472 * 12 10 8 14 14 C 1.53341 * 108.75887 * 235.80784 * 13 12 10 15 15 C 1.52668 * 109.10995 * 307.58575 * 14 13 12 16 16 C 1.53483 * 113.62642 * 189.12298 * 15 14 13 17 17 N 1.47663 * 85.99026 * 137.70629 * 16 15 14 18 18 C 1.36938 * 134.45816 * 155.69889 * 17 16 15 19 19 H 1.08002 * 120.00249 * 179.97438 * 18 17 16 20 20 C 1.38807 * 119.99829 * 359.97438 * 18 17 16 21 21 N 1.31622 * 120.00124 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47589 * 89.99986 * 22 20 18 24 24 H 1.48507 * 109.47154 * 209.99645 * 22 20 18 25 25 H 1.48499 * 109.47228 * 329.99227 * 22 20 18 26 26 C 1.47670 * 91.08716 * 335.68515 * 17 16 15 27 27 C 1.52670 * 113.18676 * 57.59558 * 15 14 13 28 28 C 1.46886 * 120.46383 * 180.02562 * 12 10 8 29 29 H 1.08990 * 109.47096 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47088 * 300.00449 * 1 2 3 31 31 H 1.09003 * 109.46801 * 60.00032 * 1 2 3 32 32 H 1.08997 * 109.47533 * 239.99679 * 2 1 3 33 33 H 1.09003 * 109.46801 * 119.99968 * 2 1 3 34 34 H 1.09000 * 110.48611 * 85.06328 * 5 3 2 35 35 H 1.08995 * 110.59530 * 322.47653 * 5 3 2 36 36 H 1.09003 * 110.03219 * 264.32397 * 6 5 3 37 37 H 1.09004 * 110.07467 * 142.91846 * 6 5 3 38 38 H 1.08999 * 110.03141 * 240.71410 * 7 6 5 39 39 H 1.09002 * 110.07412 * 119.30454 * 7 6 5 40 40 H 1.09006 * 109.59282 * 355.58762 * 13 12 10 41 41 H 1.08996 * 109.59165 * 116.02295 * 13 12 10 42 42 H 1.08997 * 109.53454 * 187.69283 * 14 13 12 43 43 H 1.09000 * 109.53124 * 67.47355 * 14 13 12 44 44 H 1.08999 * 113.79447 * 251.97964 * 16 15 14 45 45 H 1.09002 * 113.78483 * 23.44379 * 16 15 14 46 46 H 0.97001 * 119.99961 * 180.02562 * 21 20 18 47 47 H 1.08997 * 113.78857 * 270.04621 * 26 17 16 48 48 H 1.09000 * 113.89688 * 138.58918 * 26 17 16 49 49 H 1.09003 * 109.53503 * 182.52487 * 27 15 14 50 50 H 1.08998 * 109.53222 * 62.29795 * 27 15 14 51 51 H 1.09002 * 109.58749 * 243.97941 * 28 12 10 52 52 H 1.09003 * 109.58903 * 4.26510 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5734 2.0184 0.7992 5 6 1.7937 2.1119 -1.3749 6 6 2.8430 3.2408 -1.4395 7 6 3.9809 2.8385 -0.4850 8 6 3.5831 1.4793 0.1268 9 1 4.0331 0.6614 -0.4358 10 6 3.9957 1.4116 1.5746 11 8 3.1561 1.2717 2.4385 12 7 5.2978 1.5066 1.9094 13 6 6.3237 1.6701 0.8710 14 6 7.3554 0.5449 1.0156 15 6 7.8572 0.5091 2.4570 16 6 9.0528 -0.4297 2.6688 17 7 9.6134 0.6436 3.5138 18 6 10.5152 0.6814 4.5437 19 1 10.7642 1.6236 5.0092 20 6 11.1093 -0.4913 4.9892 21 7 10.8055 -1.6396 4.4222 22 14 12.3389 -0.4399 6.3945 23 1 11.6231 -0.6053 7.6850 24 1 13.3241 -1.5390 6.2306 25 1 13.0473 0.8652 6.3849 26 6 8.8120 1.6602 2.8031 27 6 6.7390 0.3152 3.4782 28 6 5.7114 1.4413 3.3173 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.7860 2.5244 -1.4232 35 1 1.9516 1.3976 -2.1829 36 1 2.3991 4.1821 -1.1154 37 1 3.2251 3.3387 -2.4556 38 1 4.0892 3.5845 0.3022 39 1 4.9155 2.7405 -1.0374 40 1 5.8591 1.6157 -0.1136 41 1 6.8159 2.6350 0.9923 42 1 8.1927 0.7295 0.3426 43 1 6.8908 -0.4095 0.7676 44 1 8.8065 -1.3384 3.2181 45 1 9.6275 -0.6211 1.7626 46 1 11.2204 -2.4592 4.7338 47 1 9.3151 2.0898 1.9369 48 1 8.3735 2.4135 3.4576 49 1 7.1559 0.3434 4.4849 50 1 6.2546 -0.6466 3.3100 51 1 6.1606 2.3902 3.6105 52 1 4.8431 1.2388 3.9443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035787914.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:31 Heat of formation + Delta-G solvation = -3.769721 kcal Electronic energy + Delta-G solvation = -28580.302051 eV Core-core repulsion = 24966.314568 eV Total energy + Delta-G solvation = -3613.987482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.69666 -39.16542 -37.58400 -35.72776 -33.42321 -32.45249 -31.27904 -30.51641 -29.09146 -27.82457 -26.79072 -25.04235 -23.89218 -23.32367 -22.68049 -21.60028 -20.65578 -20.25525 -19.21934 -17.69465 -16.75591 -16.57946 -16.03136 -15.71040 -14.91498 -14.82534 -14.67161 -14.61535 -14.37994 -13.78619 -13.73444 -13.47551 -13.39265 -13.22615 -12.90476 -12.39780 -12.30380 -12.19604 -12.06143 -11.96493 -11.70675 -11.45154 -11.27629 -11.08698 -11.02647 -10.86400 -10.83278 -10.80887 -10.72938 -10.65561 -10.53190 -10.33447 -10.11409 -9.69371 -9.65320 -9.44663 -9.32131 -8.77141 -8.36739 -6.84003 -5.74518 -3.06178 2.73836 3.13189 3.39746 3.44651 3.46417 4.20863 4.34226 4.43840 4.47436 4.78461 4.89761 4.97772 5.06412 5.08277 5.17550 5.18039 5.23828 5.27438 5.34855 5.38251 5.39348 5.42474 5.51021 5.53111 5.57737 5.65702 5.69521 5.72557 5.78010 5.85291 5.90351 5.94911 5.96440 6.00104 6.01157 6.04693 6.20065 6.22584 6.30447 6.32367 6.33499 6.48094 6.65153 6.67162 6.83237 6.90991 7.25647 7.39881 7.57132 7.60777 8.01188 8.30664 9.07329 9.73504 10.63907 11.42419 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.028408 B = 0.002749 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.410285 B =10181.664685 C =10518.494088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.070 4.070 4 H 0.087 0.913 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.111 4.111 9 H 0.100 0.900 10 C 0.520 3.480 11 O -0.547 6.547 12 N -0.604 5.604 13 C 0.105 3.895 14 C -0.119 4.119 15 C -0.108 4.108 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.127 3.873 27 C -0.095 4.095 28 C 0.113 3.887 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.024 0.976 46 H 0.253 0.747 47 H 0.030 0.970 48 H 0.040 0.960 49 H 0.086 0.914 50 H 0.059 0.941 51 H 0.065 0.935 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.427 7.197 -14.171 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.089 4.089 4 H 0.105 0.895 5 C -0.158 4.158 6 C -0.161 4.161 7 C -0.154 4.154 8 C -0.132 4.132 9 H 0.118 0.882 10 C 0.308 3.692 11 O -0.425 6.425 12 N -0.336 5.336 13 C -0.018 4.018 14 C -0.158 4.158 15 C -0.109 4.109 16 C 0.048 3.952 17 N -0.335 5.335 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.001 3.999 27 C -0.133 4.133 28 C -0.009 4.009 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.058 0.942 49 H 0.104 0.896 50 H 0.078 0.922 51 H 0.084 0.916 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.614 6.999 -13.458 23.246 hybrid contribution 1.150 -0.059 0.662 1.328 sum -16.465 6.940 -12.796 21.977 Atomic orbital electron populations 1.21735 0.95883 1.01348 1.01639 1.21497 0.95934 0.95836 1.02006 1.21995 0.92525 0.96823 0.97526 0.89481 1.22452 0.98836 0.97415 0.97078 1.22120 0.95896 0.98756 0.99358 1.22262 0.98883 0.95455 0.98849 1.22226 0.98015 0.99677 0.93304 0.88237 1.20525 0.81937 0.75806 0.90942 1.90659 1.50461 1.50006 1.51331 1.48111 1.05848 1.71670 1.08019 1.21953 0.89519 0.99482 0.90850 1.21843 0.98032 0.98113 0.97851 1.22380 0.95281 1.00595 0.92688 1.22229 0.87088 0.93439 0.92461 1.45948 1.49615 1.02757 1.35162 1.19005 1.15825 0.93622 1.06424 0.90445 1.24757 1.00483 0.95387 0.99843 1.69818 1.46274 0.97385 1.43359 0.86162 0.80825 0.76980 0.82036 1.21574 1.21708 1.20781 1.22579 0.90507 0.92554 0.94289 1.21465 0.94220 0.97274 1.00387 1.21668 0.98609 0.99420 0.81217 0.93017 0.92683 0.92943 0.92294 0.91465 0.91555 0.91466 0.91769 0.91610 0.91324 0.90664 0.89779 0.91290 0.90765 0.91856 0.91038 0.95812 0.93730 0.95228 0.94229 0.89583 0.92226 0.91647 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.81 37.16 0.36 -0.90 16 2 C -0.12 -1.11 5.43 -26.73 -0.15 -1.26 16 3 C -0.07 -0.68 1.88 -88.64 -0.17 -0.84 16 4 H 0.09 1.02 7.52 -51.93 -0.39 0.63 16 5 C -0.12 -0.90 5.69 -25.07 -0.14 -1.04 16 6 C -0.12 -0.88 6.80 -25.62 -0.17 -1.06 16 7 C -0.12 -0.96 5.13 -25.61 -0.13 -1.10 16 8 C -0.11 -1.12 1.77 -90.13 -0.16 -1.28 16 9 H 0.10 0.92 7.69 -51.93 -0.40 0.52 16 10 C 0.52 7.10 6.95 -10.99 -0.08 7.03 16 11 O -0.55 -9.31 14.98 5.56 0.08 -9.22 16 12 N -0.60 -8.09 2.94 -172.68 -0.51 -8.60 16 13 C 0.10 1.19 5.56 -3.66 -0.02 1.17 16 14 C -0.12 -1.63 5.26 -26.72 -0.14 -1.77 16 15 C -0.11 -1.91 0.77 -154.43 -0.12 -2.03 16 16 C 0.17 3.97 6.64 -3.16 -0.02 3.95 16 17 N -0.61 -15.28 3.53 -179.77 -0.64 -15.91 16 18 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.26 11.39 55.49 0.63 -26.63 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.13 2.49 7.72 -3.15 -0.02 2.46 16 27 C -0.10 -1.65 5.21 -26.75 -0.14 -1.79 16 28 C 0.11 1.70 6.30 -3.68 -0.02 1.68 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.38 7.65 -51.93 -0.40 -0.01 16 32 H 0.06 0.50 7.99 -51.93 -0.41 0.09 16 33 H 0.07 0.80 7.97 -51.93 -0.41 0.38 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 39 H 0.07 0.52 6.58 -51.93 -0.34 0.18 16 40 H 0.08 0.75 4.19 -51.93 -0.22 0.53 16 41 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 45 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 48 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 49 H 0.09 1.71 8.01 -51.93 -0.42 1.30 16 50 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.07 0.96 7.49 -51.93 -0.39 0.57 16 52 H 0.09 1.39 6.97 -51.93 -0.36 1.02 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -31.67 388.63 -10.47 -42.14 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -9.50 Total: -1.41 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.38 Total: -3.42 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.51 Total: -51.15 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.67 -10.47 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035787914.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.374 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds