Wall clock time and date at job start Tue Mar 31 2020 12:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46790 * 2 1 4 4 H 1.08994 * 109.49956 * 304.99230 * 3 2 1 5 5 C 1.53195 * 109.49939 * 65.06539 * 3 2 1 6 6 N 1.46924 * 108.77541 * 174.58297 * 5 3 2 7 7 C 1.34779 * 120.62688 * 126.36826 * 6 5 3 8 8 O 1.21278 * 119.99854 * 174.91012 * 7 6 5 9 9 C 1.50699 * 120.00073 * 354.90575 * 7 6 5 10 10 C 1.55925 * 115.92490 * 300.13377 * 9 7 6 11 11 C 1.56526 * 103.72405 * 199.69779 * 10 9 7 12 12 C 1.55919 * 104.82660 * 359.59534 * 11 10 9 13 13 C 1.55931 * 104.50021 * 289.99181 * 12 11 10 14 14 C 1.54580 * 104.63780 * 70.27597 * 13 12 11 15 15 C 1.56949 * 100.65084 * 34.05233 * 12 11 10 16 16 C 1.46925 * 118.74006 * 306.39038 * 6 5 3 17 17 C 1.53193 * 108.77540 * 53.60805 * 16 6 5 18 18 C 1.53037 * 109.34148 * 305.38107 * 17 16 6 19 19 H 1.09005 * 109.43212 * 301.31333 * 18 17 16 20 20 N 1.46491 * 109.48732 * 181.35512 * 18 17 16 21 21 C 1.36936 * 120.00086 * 84.91286 * 20 18 17 22 22 H 1.07993 * 120.00295 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99603 * 179.97438 * 21 20 18 24 24 N 1.31615 * 120.00609 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99523 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47012 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47058 * 120.00324 * 25 23 21 28 28 H 1.48494 * 109.47127 * 239.99881 * 25 23 21 29 29 H 1.09000 * 109.47185 * 60.00276 * 1 2 3 30 30 H 1.08993 * 109.47332 * 300.00230 * 1 2 3 31 31 H 1.09002 * 109.47039 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47185 * 119.99724 * 2 1 3 33 33 H 1.08992 * 109.47794 * 240.00036 * 2 1 3 34 34 H 1.09001 * 109.58057 * 294.37169 * 5 3 2 35 35 H 1.08996 * 109.58343 * 54.65375 * 5 3 2 36 36 H 1.08996 * 110.40210 * 318.76146 * 10 9 7 37 37 H 1.09005 * 110.40246 * 81.17593 * 10 9 7 38 38 H 1.09005 * 110.08561 * 240.86179 * 11 10 9 39 39 H 1.08998 * 110.54403 * 118.56303 * 11 10 9 40 40 H 1.09001 * 116.53006 * 160.66778 * 12 11 10 41 41 H 1.09001 * 110.39999 * 311.49070 * 13 12 11 42 42 H 1.08990 * 110.50003 * 189.11517 * 13 12 11 43 43 H 1.09001 * 110.40410 * 241.20930 * 14 13 12 44 44 H 1.09002 * 110.49897 * 118.84511 * 14 13 12 45 45 H 1.09000 * 112.02683 * 189.69593 * 15 12 11 46 46 H 1.09000 * 112.02714 * 63.16886 * 15 12 11 47 47 H 1.08998 * 109.58187 * 173.39436 * 16 6 5 48 48 H 1.08992 * 109.58737 * 293.67811 * 16 6 5 49 49 H 1.09009 * 109.49617 * 65.31891 * 17 16 6 50 50 H 1.08995 * 109.49728 * 185.37957 * 17 16 6 51 51 H 0.97010 * 120.00008 * 264.91503 * 20 18 17 52 52 H 0.97000 * 120.00180 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6056 1.9820 -0.8417 5 6 1.6363 2.1276 1.3095 6 7 2.2428 3.4652 1.3499 7 6 1.4829 4.5575 1.5646 8 8 2.0054 5.6450 1.6878 9 6 -0.0159 4.4274 1.6515 10 6 -0.7246 3.8511 0.3878 11 6 -2.2122 4.3080 0.5555 12 6 -2.2383 5.0964 1.9004 13 6 -2.0297 4.0066 2.9960 14 6 -0.5579 3.5636 2.8310 15 6 -0.8158 5.7591 1.8758 16 6 3.6933 3.5895 1.1513 17 6 4.0738 2.8881 -0.1564 18 6 3.5653 1.4451 -0.1241 19 1 4.0000 0.9264 0.7304 20 7 3.9556 0.7616 -1.3596 21 6 5.1939 0.1859 -1.4618 22 1 5.8826 0.2353 -0.6314 23 6 5.5634 -0.4622 -2.6325 24 7 4.7240 -0.5229 -3.6444 25 14 7.2529 -1.2469 -2.7721 26 1 8.0009 -1.0402 -1.5060 27 1 7.1032 -2.7024 -3.0261 28 1 7.9974 -0.6226 -3.8951 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 0.5510 2.2169 1.3556 35 1 1.9907 1.5377 2.1547 36 1 -0.2858 4.2695 -0.5179 37 1 -0.6562 2.7633 0.3767 38 1 -2.8669 3.4382 0.6122 39 1 -2.5091 4.9549 -0.2700 40 1 -3.0811 5.7705 2.0534 41 1 -2.7011 3.1647 2.8271 42 1 -2.1909 4.4273 3.9884 43 1 -0.5058 2.5039 2.5812 44 1 0.0062 3.7668 3.7413 45 1 -0.5675 6.2298 2.8271 46 1 -0.7012 6.4503 1.0408 47 1 3.9650 4.6435 1.0932 48 1 4.2176 3.1224 1.9849 49 1 3.6208 3.4143 -0.9967 50 1 5.1580 2.8899 -0.2680 51 1 3.3369 0.7169 -2.1055 52 1 4.9822 -0.9760 -4.4622 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037882746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:42 Heat of formation + Delta-G solvation = -46.657506 kcal Electronic energy + Delta-G solvation = -29446.801693 eV Core-core repulsion = 25830.954457 eV Total energy + Delta-G solvation = -3615.847236 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.13609 -40.19693 -38.95885 -36.20021 -35.11781 -33.75388 -31.77863 -31.28049 -30.16898 -29.85545 -28.71290 -26.72883 -25.12621 -24.74831 -23.12392 -22.64129 -21.62016 -21.02152 -20.32669 -19.83746 -19.03437 -17.77891 -17.36910 -16.71393 -16.58587 -16.06664 -15.90819 -15.62468 -15.57728 -15.41069 -14.69972 -14.62127 -14.53182 -13.94416 -13.76328 -13.62088 -13.49346 -13.23742 -13.12767 -13.00318 -12.86628 -12.72471 -12.67578 -12.47302 -12.16607 -12.12070 -12.06560 -11.97646 -11.86186 -11.83515 -11.72008 -11.54693 -11.48109 -11.30761 -11.00768 -10.86672 -10.85146 -10.65047 -9.68760 -8.97086 -7.92520 -5.19613 1.46653 1.47643 1.51752 1.56730 1.97419 2.56534 3.28579 3.40557 3.44756 3.55207 3.66804 3.78725 3.82215 4.02055 4.08222 4.20166 4.23601 4.25454 4.28027 4.38646 4.43324 4.46292 4.48600 4.55127 4.57152 4.62539 4.67045 4.72912 4.79806 4.81882 4.83826 4.93572 4.96853 5.04580 5.08737 5.12422 5.15396 5.17471 5.21136 5.26955 5.34898 5.36914 5.39875 5.41099 5.45160 5.51042 5.55423 5.57993 5.67579 6.29370 6.41069 7.12113 7.36291 8.12091 8.35562 9.30943 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.003501 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.728870 B = 7996.295247 C = 8656.849583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.093 4.093 4 H 0.057 0.943 5 C 0.107 3.893 6 N -0.602 5.602 7 C 0.537 3.463 8 O -0.588 6.588 9 C -0.109 4.109 10 C -0.113 4.113 11 C -0.113 4.113 12 C -0.094 4.094 13 C -0.113 4.113 14 C -0.110 4.110 15 C -0.100 4.100 16 C 0.119 3.881 17 C -0.138 4.138 18 C 0.180 3.820 19 H 0.046 0.954 20 N -0.729 5.729 21 C -0.231 4.231 22 H 0.074 0.926 23 C -0.073 4.073 24 N -0.968 5.968 25 Si 0.965 3.035 26 H -0.267 1.267 27 H -0.294 1.294 28 H -0.298 1.298 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.038 0.962 50 H 0.058 0.942 51 H 0.372 0.628 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.195 6.830 15.076 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.113 4.113 4 H 0.076 0.924 5 C -0.015 4.015 6 N -0.333 5.333 7 C 0.326 3.674 8 O -0.468 6.468 9 C -0.112 4.112 10 C -0.151 4.151 11 C -0.151 4.151 12 C -0.112 4.112 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.138 4.138 16 C -0.004 4.004 17 C -0.179 4.179 18 C 0.071 3.929 19 H 0.064 0.936 20 N -0.368 5.368 21 C -0.363 4.363 22 H 0.092 0.908 23 C -0.265 4.265 24 N -0.619 5.619 25 Si 0.795 3.205 26 H -0.192 1.192 27 H -0.222 1.222 28 H -0.226 1.226 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.139 0.861 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.098 0.902 49 H 0.057 0.943 50 H 0.077 0.923 51 H 0.204 0.796 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -17.723 7.299 15.207 24.467 hybrid contribution 1.677 -0.325 -1.215 2.096 sum -16.046 6.974 13.992 22.403 Atomic orbital electron populations 1.21825 0.94013 1.02314 1.02241 1.21373 0.96778 0.94632 1.01918 1.21650 0.95019 0.96961 0.97718 0.92415 1.22385 1.00628 0.81284 0.97201 1.48157 1.07842 1.07442 1.69810 1.20503 0.89278 0.82916 0.74660 1.90633 1.75493 1.28215 1.52487 1.22918 0.88350 1.00130 0.99824 1.23125 0.96184 1.01065 0.94685 1.22941 0.94317 1.00456 0.97349 1.23601 0.95958 0.96405 0.95209 1.22624 0.94608 0.98793 0.99012 1.22808 0.97185 0.99129 0.95673 1.23361 0.94983 0.94365 1.01108 1.21522 0.80357 1.01148 0.97364 1.22462 1.00844 0.98448 0.96169 1.20401 0.93350 0.90196 0.88962 0.93555 1.42558 1.15441 1.64779 1.13982 1.19604 0.92704 1.25681 0.98338 0.90821 1.25437 1.01433 1.03174 0.96504 1.69809 1.36912 1.50044 1.05156 0.85191 0.80365 0.77524 0.77421 1.19152 1.22157 1.22601 0.93049 0.90651 0.92172 0.91739 0.93822 0.86099 0.89855 0.93440 0.89486 0.89374 0.91527 0.86164 0.89402 0.90801 0.89407 0.91962 0.91562 0.92454 0.90840 0.90222 0.94288 0.92321 0.79605 0.94237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.53 71.98 0.69 -2.28 16 2 C -0.11 -3.07 5.31 30.59 0.16 -2.90 16 3 C -0.09 -2.75 1.92 -10.71 -0.02 -2.78 16 4 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.11 2.46 4.42 86.36 0.38 2.84 16 6 N -0.60 -16.80 2.97 -818.92 -2.43 -19.24 16 7 C 0.54 15.82 7.12 87.66 0.62 16.45 16 8 O -0.59 -21.92 15.94 -3.02 -0.05 -21.97 16 9 C -0.11 -2.30 0.87 -49.51 -0.04 -2.35 16 10 C -0.11 -2.09 5.39 32.84 0.18 -1.92 16 11 C -0.11 -1.50 6.26 32.84 0.21 -1.29 16 12 C -0.09 -1.17 5.19 -7.38 -0.04 -1.21 16 13 C -0.11 -1.22 6.21 32.15 0.20 -1.02 16 14 C -0.11 -1.66 5.16 32.14 0.17 -1.49 16 15 C -0.10 -1.98 5.67 33.37 0.19 -1.80 16 16 C 0.12 3.69 6.42 86.36 0.55 4.25 16 17 C -0.14 -5.05 5.66 30.67 0.17 -4.87 16 18 C 0.18 6.74 2.19 45.02 0.10 6.84 16 19 H 0.05 1.76 8.08 -2.38 -0.02 1.74 16 20 N -0.73 -35.32 4.33 -322.82 -1.40 -36.72 16 21 C -0.23 -12.49 9.93 84.03 0.83 -11.66 16 22 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 23 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 24 N -0.97 -58.57 13.06 21.65 0.28 -58.28 16 25 Si 0.96 45.94 29.55 68.60 2.03 47.96 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.09 6.45 -2.39 -0.02 1.07 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.61 7.22 -2.39 -0.02 1.59 16 34 H 0.12 2.19 0.83 -2.39 0.00 2.19 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.43 5.59 -2.38 -0.01 1.42 16 38 H 0.09 0.87 7.83 -2.38 -0.02 0.85 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 0.68 7.83 -2.39 -0.02 0.66 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.09 1.08 5.93 -2.39 -0.01 1.06 16 44 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 47 H 0.07 2.45 7.04 -2.39 -0.02 2.44 16 48 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 51 H 0.37 19.65 7.51 -92.70 -0.70 18.95 16 52 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -68.30 382.51 3.45 -64.85 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.20 Total: 32.26 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.82 Total: -8.87 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -3.55 Total: -114.24 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -68.30 3.45 -64.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037882746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.195 kcal (2) G-P(sol) polarization free energy of solvation -68.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds