Wall clock time and date at job start Tue Mar 31 2020 12:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09003 * 109.50030 * 304.93774 * 3 2 1 5 5 C 1.53197 * 109.49987 * 64.99909 * 3 2 1 6 6 N 1.46919 * 108.77817 * 174.58390 * 5 3 2 7 7 C 1.34780 * 120.62597 * 126.37104 * 6 5 3 8 8 O 1.21280 * 120.00507 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99882 * 180.02562 * 7 6 5 10 10 C 1.53949 * 113.57916 * 279.24593 * 9 7 6 11 11 C 1.53073 * 86.72604 * 220.68689 * 10 9 7 12 12 C 1.52907 * 121.17707 * 150.58648 * 11 10 9 13 13 C 1.53949 * 86.77975 * 100.75303 * 12 11 10 14 14 C 1.52909 * 121.06973 * 259.12771 * 11 10 9 15 15 C 1.52919 * 88.06797 * 24.83537 * 11 10 9 16 16 C 1.46926 * 118.74265 * 306.39790 * 6 5 3 17 17 C 1.53194 * 108.77305 * 53.60651 * 16 6 5 18 18 C 1.53035 * 109.49986 * 184.84183 * 3 2 1 19 19 H 1.08996 * 109.46595 * 58.66131 * 18 3 2 20 20 N 1.46505 * 109.45718 * 298.70200 * 18 3 2 21 21 C 1.36940 * 119.99835 * 154.99960 * 20 18 3 22 22 H 1.08003 * 119.99879 * 0.02562 * 21 20 18 23 23 C 1.38811 * 119.99883 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00107 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99809 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47114 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47398 * 119.99861 * 25 23 21 28 28 H 1.48501 * 109.47003 * 239.99898 * 25 23 21 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.08997 * 109.58822 * 294.37977 * 5 3 2 35 35 H 1.09002 * 109.58000 * 54.79878 * 5 3 2 36 36 H 1.09007 * 112.82177 * 50.33485 * 9 7 6 37 37 H 1.08997 * 113.66381 * 335.13771 * 10 9 7 38 38 H 1.08999 * 113.66102 * 106.19396 * 10 9 7 39 39 H 1.08994 * 113.66466 * 215.22247 * 12 11 10 40 40 H 1.09005 * 113.66252 * 346.28329 * 12 11 10 41 41 H 1.09003 * 113.58256 * 270.13020 * 13 12 11 42 42 H 1.08999 * 113.65000 * 139.35335 * 13 12 11 43 43 H 1.08999 * 113.66424 * 13.62743 * 14 11 10 44 44 H 1.08999 * 113.66464 * 144.68612 * 14 11 10 45 45 H 1.08991 * 113.66412 * 220.69664 * 15 11 10 46 46 H 1.09000 * 113.66254 * 89.63675 * 15 11 10 47 47 H 1.09005 * 109.58674 * 173.39308 * 16 6 5 48 48 H 1.08999 * 109.58393 * 293.67457 * 16 6 5 49 49 H 1.08992 * 109.49685 * 65.32189 * 17 16 6 50 50 H 1.09008 * 109.49297 * 185.41403 * 17 16 6 51 51 H 0.97000 * 119.99941 * 335.00074 * 20 18 3 52 52 H 0.97002 * 119.99616 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4814 4.5579 1.5629 8 8 0.2849 4.4422 1.7243 9 6 2.1182 5.9233 1.6012 10 6 2.7790 6.2569 2.9510 11 6 2.2011 7.6648 2.7863 12 6 1.8337 8.5169 4.0016 13 6 3.1657 9.2555 3.7776 14 6 3.0731 8.8241 2.3027 15 6 1.1207 7.0602 1.8887 16 6 3.6921 3.5899 1.1522 17 6 4.0739 2.8881 -0.1549 18 6 3.5655 1.4450 -0.1218 19 1 3.8574 0.9360 -1.0403 20 7 4.1480 0.7485 1.0280 21 6 5.3861 0.1727 0.9244 22 1 5.9333 0.2324 -0.0048 23 6 5.9378 -0.4876 2.0137 24 7 5.2711 -0.5599 3.1462 25 14 7.6270 -1.2724 1.8726 26 1 8.1628 -1.0514 0.5053 27 1 8.5424 -0.6596 2.8684 28 1 7.5185 -2.7306 2.1315 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 0.5496 2.2173 1.3539 35 1 1.9908 1.5397 2.1546 36 1 2.7611 6.1142 0.7419 37 1 2.3576 5.7067 3.7923 38 1 3.8682 6.2245 2.9247 39 1 0.9550 9.1430 3.8473 40 1 1.7967 7.9549 4.9348 41 1 4.0062 8.8103 4.3102 42 1 3.0974 10.3338 3.9217 43 1 4.0261 8.5076 1.8788 44 1 2.5426 9.5366 1.6710 45 1 0.8870 7.6684 1.0150 46 1 0.2324 6.7361 2.4310 47 1 3.9640 4.6439 1.0940 48 1 4.2156 3.1231 1.9866 49 1 3.6218 3.4140 -0.9957 50 1 5.1584 2.8893 -0.2651 51 1 3.6566 0.6953 1.8627 52 1 5.6568 -1.0210 3.9075 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037910647.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:53 Heat of formation + Delta-G solvation = 4.256366 kcal Electronic energy + Delta-G solvation = -28698.609447 eV Core-core repulsion = 25084.970002 eV Total energy + Delta-G solvation = -3613.639445 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.98373 -39.48352 -37.68212 -34.74215 -34.27951 -33.71285 -31.66901 -29.43552 -28.65591 -26.32571 -25.91065 -25.77520 -24.28289 -23.71105 -23.44407 -21.64294 -20.74755 -19.14350 -18.19360 -17.99239 -17.39449 -16.93782 -15.82351 -15.73939 -15.32592 -14.96814 -14.62548 -14.34552 -13.98167 -13.86804 -13.48022 -13.27794 -13.10700 -12.96789 -12.87161 -12.59794 -12.45151 -12.26786 -12.15541 -12.00229 -11.67692 -11.37165 -11.13535 -11.06620 -10.98903 -10.97023 -10.80285 -10.71189 -10.38193 -10.28581 -10.23987 -10.20957 -10.13815 -10.05079 -9.77050 -9.54847 -9.29591 -8.92995 -8.15802 -6.97993 -5.80084 -3.08340 2.88928 3.35194 3.40102 3.46487 3.48372 4.24105 4.31349 4.46266 4.56402 4.61380 4.64308 4.67277 4.96605 5.18597 5.25527 5.29102 5.32869 5.36982 5.49125 5.54444 5.54802 5.57500 5.60380 5.66482 5.71784 5.72536 5.75599 5.80498 5.82780 5.85322 5.87058 5.90704 5.94376 6.12142 6.17556 6.18721 6.23051 6.28391 6.37234 6.39320 6.41310 6.43420 6.58612 6.67167 6.72848 6.79580 6.96078 7.04890 7.68067 7.80936 8.38416 8.49218 9.50224 10.07244 10.42437 11.42339 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.003746 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.335083 B = 7473.183497 C = 9005.029451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.599 5.599 7 C 0.521 3.479 8 O -0.556 6.556 9 C -0.132 4.132 10 C -0.095 4.095 11 C -0.107 4.107 12 C -0.127 4.127 13 C -0.140 4.140 14 C -0.117 4.117 15 C -0.102 4.102 16 C 0.116 3.884 17 C -0.150 4.150 18 C 0.179 3.821 19 H 0.050 0.950 20 N -0.719 5.719 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.047 0.953 50 H 0.073 0.927 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 15.998 -3.151 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.083 0.917 5 C -0.004 4.004 6 N -0.330 5.330 7 C 0.309 3.691 8 O -0.435 6.435 9 C -0.153 4.153 10 C -0.133 4.133 11 C -0.107 4.107 12 C -0.165 4.165 13 C -0.177 4.177 14 C -0.154 4.154 15 C -0.140 4.140 16 C -0.007 4.007 17 C -0.192 4.192 18 C 0.068 3.932 19 H 0.068 0.932 20 N -0.361 5.361 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.734 3.266 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.066 0.934 50 H 0.092 0.908 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.823 15.840 -3.113 17.525 hybrid contribution 1.050 -0.587 0.166 1.215 sum -5.772 15.253 -2.946 16.572 Atomic orbital electron populations 1.21851 0.96842 1.00993 1.01344 1.21416 0.94259 0.95803 1.03315 1.21739 0.97325 0.96085 0.97098 0.91691 1.21667 0.98713 0.81904 0.98157 1.48132 1.08670 1.06512 1.69712 1.20424 0.86691 0.85917 0.76034 1.90630 1.15053 1.86689 1.51108 1.22680 0.99931 0.92567 1.00119 1.22624 1.00405 0.94283 0.96002 1.22454 0.97536 0.93519 0.97170 1.22737 0.97516 0.98343 0.97861 1.22820 0.98158 0.99976 0.96782 1.22659 0.99512 0.96645 0.96616 1.22682 0.96956 0.94959 0.99361 1.21710 0.79223 0.99967 0.99776 1.22530 1.01709 0.99322 0.95601 1.20213 0.89778 0.90636 0.92535 0.93227 1.42486 1.19010 1.64002 1.10598 1.19264 0.93542 1.26864 0.97093 0.91238 1.24693 0.98510 1.01503 0.96036 1.69661 1.37977 1.48114 1.02250 0.86182 0.84327 0.78937 0.77106 1.20654 1.22005 1.21999 0.93409 0.93185 0.92796 0.90512 0.92084 0.89727 0.90923 0.87251 0.89345 0.90461 0.90039 0.91382 0.90193 0.91692 0.91254 0.89906 0.91262 0.88655 0.91231 0.89846 0.93395 0.90823 0.78091 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 37.16 0.36 -1.77 16 2 C -0.11 -1.78 5.19 -26.73 -0.14 -1.92 16 3 C -0.10 -1.69 2.14 -90.50 -0.19 -1.88 16 4 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 5 C 0.12 2.03 5.03 -3.71 -0.02 2.01 16 6 N -0.60 -9.72 2.97 -172.77 -0.51 -10.24 16 7 C 0.52 8.36 7.22 -10.98 -0.08 8.28 16 8 O -0.56 -10.57 15.31 5.56 0.09 -10.48 16 9 C -0.13 -1.62 2.74 -90.79 -0.25 -1.87 16 10 C -0.10 -1.08 7.13 -26.20 -0.19 -1.26 16 11 C -0.11 -1.05 1.11 -154.62 -0.17 -1.22 16 12 C -0.13 -1.14 7.84 -26.28 -0.21 -1.34 16 13 C -0.14 -1.13 8.08 -25.75 -0.21 -1.33 16 14 C -0.12 -0.98 7.84 -26.28 -0.21 -1.18 16 15 C -0.10 -1.16 7.16 -26.28 -0.19 -1.35 16 16 C 0.12 1.81 6.04 -3.71 -0.02 1.79 16 17 C -0.15 -2.45 5.78 -26.61 -0.15 -2.60 16 18 C 0.18 3.30 2.53 -67.89 -0.17 3.13 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -16.34 3.72 -53.38 -0.20 -16.54 16 21 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 22 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -26.87 13.06 55.49 0.72 -26.14 16 25 Si 0.90 21.63 29.55 -169.99 -5.02 16.61 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 32 H 0.08 1.44 7.69 -51.93 -0.40 1.04 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.48 5.72 -51.93 -0.30 1.18 16 35 H 0.07 1.39 6.64 -51.93 -0.34 1.05 16 36 H 0.11 1.21 7.29 -51.93 -0.38 0.83 16 37 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.10 1.25 7.44 -51.93 -0.39 0.86 16 47 H 0.07 0.91 5.66 -51.93 -0.29 0.61 16 48 H 0.08 1.55 7.74 -51.93 -0.40 1.15 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 51 H 0.38 9.41 5.94 -40.82 -0.24 9.17 16 52 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -28.99 394.00 -10.47 -39.46 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -9.40 Total: 10.59 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -2.08 Total: -9.18 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.01 Total: -52.92 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.99 -10.47 -39.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037910647.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.713 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds