Wall clock time and date at job start Tue Mar 31 2020 12:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 H 1.08995 * 110.06165 * 51.84661 * 3 2 1 5 5 C 1.54378 * 110.06726 * 290.39298 * 3 2 1 6 6 C 1.54896 * 104.21410 * 217.14985 * 5 3 2 7 7 C 1.54888 * 102.74643 * 37.92651 * 6 5 3 8 8 C 1.53874 * 110.03362 * 173.26851 * 3 2 1 9 9 H 1.09002 * 110.03139 * 238.56663 * 8 3 2 10 10 C 1.50692 * 110.03282 * 359.94781 * 8 3 2 11 11 O 1.21282 * 120.00386 * 47.33405 * 10 8 3 12 12 N 1.34778 * 119.99900 * 227.33059 * 10 8 3 13 13 C 1.46939 * 120.44466 * 5.14493 * 12 10 8 14 14 C 1.54058 * 108.30263 * 125.71851 * 13 12 10 15 15 H 1.08999 * 111.01610 * 172.55803 * 14 13 12 16 16 C 1.53370 * 108.83942 * 294.51086 * 14 13 12 17 17 C 1.53011 * 109.25181 * 60.25334 * 16 14 13 18 18 C 1.53009 * 109.79535 * 60.57927 * 17 16 14 19 19 C 1.53368 * 109.28229 * 299.43971 * 18 17 16 20 20 H 1.08994 * 110.59653 * 178.09781 * 19 18 17 21 21 C 1.46956 * 120.43995 * 185.41786 * 12 10 8 22 22 N 1.47569 * 107.98174 * 56.33724 * 19 18 17 23 23 C 1.36939 * 121.60973 * 122.25984 * 22 19 18 24 24 H 1.07996 * 120.00157 * 329.21316 * 23 22 19 25 25 C 1.38810 * 119.99822 * 149.21882 * 23 22 19 26 26 N 1.31619 * 120.00563 * 350.20503 * 25 23 22 27 27 Si 1.86805 * 119.99991 * 170.20635 * 25 23 22 28 28 H 1.48507 * 109.46812 * 59.99983 * 27 25 23 29 29 H 1.48500 * 109.47373 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47085 * 300.00036 * 27 25 23 31 31 H 1.09000 * 109.47142 * 60.00221 * 1 2 3 32 32 H 1.09002 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46952 * 299.99790 * 1 2 3 34 34 H 1.09001 * 109.47130 * 239.99686 * 2 1 3 35 35 H 1.09000 * 109.47142 * 119.99779 * 2 1 3 36 36 H 1.08999 * 110.49384 * 98.46059 * 5 3 2 37 37 H 1.09003 * 110.57245 * 335.87666 * 5 3 2 38 38 H 1.08994 * 110.75687 * 279.60922 * 6 5 3 39 39 H 1.09007 * 110.90986 * 156.30936 * 6 5 3 40 40 H 1.09001 * 110.48645 * 203.37762 * 7 6 5 41 41 H 1.09002 * 110.60495 * 80.79146 * 7 6 5 42 42 H 1.09000 * 109.62436 * 245.48653 * 13 12 10 43 43 H 1.09000 * 109.62104 * 6.04281 * 13 12 10 44 44 H 1.09003 * 109.50407 * 300.32696 * 16 14 13 45 45 H 1.08993 * 109.54836 * 180.21230 * 16 14 13 46 46 H 1.08999 * 109.41532 * 300.48561 * 17 16 14 47 47 H 1.08996 * 109.42213 * 180.68025 * 17 16 14 48 48 H 1.09004 * 109.49976 * 179.50068 * 18 17 16 49 49 H 1.08999 * 109.50393 * 59.38234 * 18 17 16 50 50 H 1.09000 * 109.62625 * 353.96018 * 21 12 10 51 51 H 1.08992 * 109.62956 * 114.34594 * 21 12 10 52 52 H 0.96993 * 120.00609 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5683 2.0058 0.8051 5 6 1.7402 2.1103 -1.3592 6 6 2.9773 3.0037 -1.6251 7 6 4.1453 2.1376 -1.0915 8 6 3.5693 1.4609 0.1695 9 1 3.8397 2.0331 1.0569 10 6 4.0929 0.0526 0.2844 11 8 3.7262 -0.7967 -0.4999 12 7 4.9689 -0.2632 1.2589 13 6 5.3336 0.7267 2.2816 14 6 5.0773 0.1066 3.6684 15 1 5.4547 0.7524 4.4612 16 6 3.5709 -0.1283 3.8350 17 6 3.0859 -1.0859 2.7446 18 6 3.8144 -2.4255 2.8698 19 6 5.3219 -2.2000 2.7001 20 1 5.8655 -3.1372 2.8190 21 6 5.5764 -1.6004 1.3091 22 7 5.7498 -1.2065 3.7039 23 6 6.7236 -1.4896 4.6241 24 1 6.8523 -2.5010 4.9804 25 6 7.5451 -0.4766 5.0991 26 7 7.5219 0.7105 4.5311 27 14 8.6839 -0.7981 6.5446 28 1 9.6267 -1.8920 6.1983 29 1 9.4502 0.4355 6.8550 30 1 7.8805 -1.1935 7.7292 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 0.8376 2.7180 -1.2949 37 1 1.6378 1.3580 -2.1413 38 1 2.9049 3.9389 -1.0700 39 1 3.0956 3.1972 -2.6913 40 1 4.9979 2.7652 -0.8320 41 1 4.4348 1.3882 -1.8282 42 1 6.3880 0.9846 2.1819 43 1 4.7223 1.6209 2.1600 44 1 3.0426 0.8211 3.7470 45 1 3.3759 -0.5639 4.8150 46 1 3.2896 -0.6528 1.7653 47 1 2.0131 -1.2453 2.8531 48 1 3.4590 -3.1067 2.0966 49 1 3.6191 -2.8555 3.8522 50 1 5.1248 -2.2366 0.5480 51 1 6.6489 -1.5221 1.1316 52 1 8.0963 1.4182 4.8627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039898374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:48 Heat of formation + Delta-G solvation = -2.633762 kcal Electronic energy + Delta-G solvation = -30814.055103 eV Core-core repulsion = 27200.116879 eV Total energy + Delta-G solvation = -3613.938224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.47533 -40.04208 -37.98532 -35.53475 -34.80539 -33.83315 -33.52347 -32.00297 -30.43504 -28.44185 -28.29815 -27.08243 -25.42242 -24.06099 -23.00134 -22.86717 -22.12706 -21.31200 -20.07309 -19.71846 -18.52144 -17.85213 -16.85845 -16.56931 -16.32809 -16.22709 -15.80865 -15.42259 -15.22129 -15.14800 -14.90716 -14.48806 -14.34768 -14.13458 -13.96601 -13.87014 -13.52953 -13.27270 -13.18876 -12.80906 -12.75677 -12.70412 -12.44535 -12.37716 -12.19556 -12.05492 -11.90946 -11.84252 -11.82002 -11.69572 -11.55912 -11.43325 -11.32347 -11.21373 -11.11003 -10.87426 -10.60333 -10.17282 -9.30121 -8.36265 -7.81664 -5.30374 1.49991 1.51331 1.56883 1.70229 2.15884 2.53611 3.33339 3.47626 3.51379 3.69076 3.73856 4.02041 4.14080 4.17853 4.21906 4.28405 4.31064 4.37547 4.40691 4.49225 4.53394 4.62342 4.67904 4.71792 4.72472 4.77035 4.82125 4.84927 4.87525 4.93040 4.97970 5.02180 5.06484 5.08491 5.13890 5.21751 5.23126 5.25635 5.28947 5.31844 5.37777 5.45255 5.50725 5.55020 5.57295 5.63685 5.68304 5.76034 5.91452 6.44914 6.64626 7.20179 7.30839 7.84234 8.44819 9.22281 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.004536 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.625978 B = 6171.858604 C = 6680.758054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C -0.072 4.072 4 H 0.086 0.914 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.108 4.108 8 C -0.120 4.120 9 H 0.100 0.900 10 C 0.520 3.480 11 O -0.571 6.571 12 N -0.594 5.594 13 C 0.113 3.887 14 C 0.175 3.825 15 H 0.088 0.912 16 C -0.124 4.124 17 C -0.142 4.142 18 C -0.115 4.115 19 C 0.149 3.851 20 H 0.071 0.929 21 C 0.108 3.892 22 N -0.593 5.593 23 C -0.260 4.260 24 H 0.057 0.943 25 C -0.035 4.035 26 N -0.920 5.920 27 Si 0.962 3.038 28 H -0.283 1.283 29 H -0.292 1.292 30 H -0.284 1.284 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.103 0.897 47 H 0.043 0.957 48 H 0.058 0.942 49 H 0.045 0.955 50 H 0.082 0.918 51 H 0.044 0.956 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 5.203 -9.373 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.091 4.091 4 H 0.104 0.896 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.146 4.146 8 C -0.141 4.141 9 H 0.118 0.882 10 C 0.312 3.688 11 O -0.452 6.452 12 N -0.326 5.326 13 C -0.010 4.010 14 C 0.068 3.932 15 H 0.106 0.894 16 C -0.163 4.163 17 C -0.179 4.179 18 C -0.154 4.154 19 C 0.041 3.959 20 H 0.089 0.911 21 C -0.017 4.017 22 N -0.315 5.315 23 C -0.390 4.390 24 H 0.075 0.925 25 C -0.231 4.231 26 N -0.565 5.565 27 Si 0.791 3.209 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.211 1.211 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.121 0.879 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.100 0.900 51 H 0.062 0.938 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.491 4.881 -9.701 15.811 hybrid contribution 1.251 -0.560 1.208 1.827 sum -10.240 4.321 -8.493 13.988 Atomic orbital electron populations 1.21782 0.95375 1.01204 1.01980 1.22226 0.95985 0.96230 1.03002 1.21703 0.91212 0.96736 0.99399 0.89596 1.22431 0.98618 0.98364 0.95455 1.22473 0.93087 0.98024 1.01591 1.22285 0.99200 0.98519 0.94605 1.22301 0.97980 0.92055 1.01779 0.88186 1.20731 0.77884 0.91099 0.79109 1.90591 1.58823 1.51787 1.44027 1.48340 1.42709 1.13874 1.27687 1.22354 1.00058 0.90383 0.88218 1.21162 0.88966 0.87663 0.95441 0.89395 1.22014 0.97586 0.98848 0.97881 1.22286 0.97471 0.96072 1.02075 1.21820 0.96025 0.97487 1.00039 1.21315 0.93981 0.92756 0.87819 0.91090 1.21978 0.96370 0.84414 0.98929 1.44459 1.41612 1.11490 1.33921 1.19309 1.08525 0.94787 1.16402 0.92533 1.25635 0.98800 0.96912 1.01761 1.69969 1.41350 1.03129 1.42081 0.85447 0.78924 0.76488 0.80042 1.20968 1.21846 1.21065 0.91847 0.93576 0.92632 0.91043 0.92924 0.89790 0.92226 0.89825 0.90301 0.90611 0.92808 0.92773 0.88884 0.91600 0.94342 0.87929 0.93809 0.92341 0.93617 0.90010 0.93769 0.93948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.78 71.98 0.70 -2.44 16 2 C -0.14 -3.68 3.76 30.59 0.12 -3.57 16 3 C -0.07 -1.64 2.91 -10.03 -0.03 -1.67 16 4 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 5 C -0.11 -2.08 5.63 31.71 0.18 -1.90 16 6 C -0.11 -1.99 6.91 31.89 0.22 -1.77 16 7 C -0.11 -2.51 6.35 31.67 0.20 -2.31 16 8 C -0.12 -3.18 3.01 -10.82 -0.03 -3.21 16 9 H 0.10 2.55 5.19 -2.39 -0.01 2.54 16 10 C 0.52 17.50 3.28 87.65 0.29 17.78 16 11 O -0.57 -21.54 12.66 -3.04 -0.04 -21.58 16 12 N -0.59 -21.91 1.64 -816.34 -1.34 -23.25 16 13 C 0.11 4.38 5.75 86.65 0.50 4.88 16 14 C 0.17 7.54 2.62 45.27 0.12 7.66 16 15 H 0.09 4.38 5.90 -2.39 -0.01 4.37 16 16 C -0.12 -4.62 5.59 30.72 0.17 -4.45 16 17 C -0.14 -4.98 4.39 30.60 0.13 -4.85 16 18 C -0.11 -4.25 5.58 30.72 0.17 -4.08 16 19 C 0.15 6.13 3.61 45.11 0.16 6.30 16 20 H 0.07 2.93 8.03 -2.39 -0.02 2.91 16 21 C 0.11 4.25 5.89 86.49 0.51 4.76 16 22 N -0.59 -27.93 2.53 -644.80 -1.63 -29.56 16 23 C -0.26 -13.63 9.74 84.03 0.82 -12.81 16 24 H 0.06 2.98 7.85 -2.91 -0.02 2.95 16 25 C -0.03 -1.81 5.15 84.86 0.44 -1.37 16 26 N -0.92 -48.97 10.39 21.65 0.22 -48.75 16 27 Si 0.96 43.16 29.56 68.60 2.03 45.19 16 28 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 29 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 30 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 31 H 0.06 1.17 7.58 -2.39 -0.02 1.16 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 2.27 5.89 -2.39 -0.01 2.25 16 35 H 0.05 1.62 3.96 -2.39 -0.01 1.61 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.24 7.74 -2.39 -0.02 1.22 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.44 7.80 -2.39 -0.02 1.42 16 42 H 0.05 2.44 7.67 -2.39 -0.02 2.43 16 43 H 0.09 3.03 5.09 -2.39 -0.01 3.02 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.10 3.55 1.18 -3.36 0.00 3.54 16 47 H 0.04 1.44 7.84 -2.39 -0.02 1.42 16 48 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.08 3.12 6.98 -2.39 -0.02 3.10 16 51 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 Total: -1.00 -57.57 362.77 4.82 -52.76 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.90 Total: 28.23 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 4.67 Total: -3.04 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -2.74 Total: -101.55 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.04 Total: -21.58 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -57.57 4.82 -52.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039898374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.122 kcal (2) G-P(sol) polarization free energy of solvation -57.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds