Wall clock time and date at job start Tue Mar 31 2020 12:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47626 * 2 1 4 4 H 1.08998 * 110.01277 * 305.69776 * 3 2 1 5 5 C 1.54267 * 110.02999 * 67.09106 * 3 2 1 6 6 C 1.55017 * 104.13384 * 142.93368 * 5 3 2 7 7 C 1.54889 * 102.75586 * 322.04943 * 6 5 3 8 8 C 1.53875 * 110.03134 * 184.30816 * 3 2 1 9 9 C 1.52997 * 110.03492 * 0.02562 * 8 3 2 10 10 C 1.50701 * 110.02793 * 121.38102 * 8 3 2 11 11 O 1.21283 * 120.00392 * 355.44809 * 10 8 3 12 12 N 1.34776 * 119.99814 * 175.44838 * 10 8 3 13 13 C 1.47357 * 135.87893 * 184.91061 * 12 10 8 14 14 C 1.52268 * 87.47090 * 154.22443 * 13 12 10 15 15 C 1.47358 * 135.88016 * 5.27997 * 12 10 8 16 16 C 1.53720 * 116.39356 * 142.37000 * 14 13 12 17 17 C 1.55176 * 101.38388 * 165.09621 * 16 14 13 18 18 N 1.47549 * 105.03523 * 324.50415 * 17 16 14 19 19 C 1.36939 * 125.66380 * 203.91435 * 18 17 16 20 20 H 1.07993 * 119.99833 * 179.97438 * 19 18 17 21 21 C 1.38809 * 119.99729 * 359.97438 * 19 18 17 22 22 N 1.31626 * 120.00219 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99915 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47130 * 60.00582 * 23 21 19 25 25 H 1.48503 * 109.46893 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47317 * 300.00099 * 23 21 19 27 27 C 1.47402 * 108.68003 * 23.89870 * 18 17 16 28 28 H 1.09000 * 109.47477 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47122 * 300.00467 * 1 2 3 30 30 H 1.09003 * 109.47138 * 59.99763 * 1 2 3 31 31 H 1.08998 * 109.47007 * 239.99742 * 2 1 3 32 32 H 1.09003 * 109.47138 * 120.00237 * 2 1 3 33 33 H 1.08997 * 110.48192 * 261.61768 * 5 3 2 34 34 H 1.08995 * 110.49087 * 24.27001 * 5 3 2 35 35 H 1.09002 * 110.74304 * 203.73294 * 6 5 3 36 36 H 1.09005 * 110.76170 * 80.36857 * 6 5 3 37 37 H 1.09000 * 110.48302 * 279.27648 * 7 6 5 38 38 H 1.08998 * 110.60172 * 156.68838 * 7 6 5 39 39 H 1.08999 * 109.47248 * 64.87792 * 9 8 3 40 40 H 1.08999 * 109.47197 * 184.88212 * 9 8 3 41 41 H 1.08998 * 109.46978 * 304.87813 * 9 8 3 42 42 H 1.08996 * 113.53338 * 268.84758 * 13 12 10 43 43 H 1.08997 * 113.53294 * 39.49776 * 13 12 10 44 44 H 1.08995 * 113.53201 * 320.50411 * 15 12 10 45 45 H 1.08994 * 113.53090 * 91.08017 * 15 12 10 46 46 H 1.08994 * 111.04100 * 283.12427 * 16 14 13 47 47 H 1.09003 * 111.03999 * 47.07130 * 16 14 13 48 48 H 1.08998 * 110.32888 * 205.61923 * 17 16 14 49 49 H 1.08994 * 110.41652 * 83.44287 * 17 16 14 50 50 H 0.96994 * 119.99870 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.99462 * 238.51854 * 27 18 17 52 52 H 1.09003 * 109.99362 * 117.18557 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6011 1.9934 -0.8317 5 6 1.6844 2.1287 1.3350 6 6 2.9104 3.0280 1.6369 7 6 4.0994 2.1552 1.1641 8 6 3.5749 1.4587 -0.1086 9 6 4.1103 0.0274 -0.1832 10 6 3.9977 2.2315 -1.3314 11 8 3.1608 2.6563 -2.0997 12 7 5.3057 2.4505 -1.5713 13 6 6.0866 3.2064 -2.5663 14 6 7.1946 3.3001 -1.5261 15 6 6.5783 2.0329 -0.9568 16 6 8.6353 3.1869 -2.0502 17 6 9.4456 3.7070 -0.8333 18 7 8.6107 4.7713 -0.2441 19 6 9.0650 5.8078 0.5270 20 1 8.3701 6.5390 0.9124 21 6 10.4188 5.9183 0.8131 22 7 11.2658 5.0273 0.3428 23 14 11.0388 7.3325 1.8643 24 1 10.3933 7.2761 3.2004 25 1 12.5116 7.2244 2.0207 26 1 10.7045 8.6215 1.2070 27 6 7.2062 4.5340 -0.6235 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 0.7845 2.7339 1.2249 34 1 1.5523 1.3865 2.1222 35 1 2.9838 3.2351 2.7045 36 1 2.8601 3.9546 1.0651 37 1 4.3569 1.4174 1.9240 38 1 4.9629 2.7777 0.9299 39 1 3.7640 -0.4425 -1.1037 40 1 5.2001 0.0461 -0.1724 41 1 3.7482 -0.5410 0.6734 42 1 6.3607 2.6186 -3.4423 43 1 5.6468 4.1699 -2.8240 44 1 6.5500 2.0142 0.1327 45 1 6.9884 1.1181 -1.3842 46 1 8.8894 2.1513 -2.2758 47 1 8.7858 3.8239 -2.9218 48 1 10.4021 4.1141 -1.1613 49 1 9.6034 2.9060 -0.1112 50 1 12.2117 5.1044 0.5431 51 1 6.8158 5.3956 -1.1651 52 1 6.6055 4.3498 0.2672 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072857528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:37 Heat of formation + Delta-G solvation = 14.291696 kcal Electronic energy + Delta-G solvation = -28982.250895 eV Core-core repulsion = 25369.046614 eV Total energy + Delta-G solvation = -3613.204281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.10636 -39.57889 -37.31850 -35.65799 -33.36906 -32.36110 -31.71979 -29.63131 -28.29049 -27.67003 -26.04643 -25.99013 -25.28981 -23.87035 -22.96324 -21.37660 -20.37335 -19.72855 -18.28053 -18.18782 -16.96815 -16.63093 -16.20239 -15.59278 -15.09585 -14.82953 -14.72203 -14.54789 -14.12447 -13.87405 -13.73811 -13.40769 -13.34035 -13.16014 -12.61180 -12.50038 -12.37241 -12.13716 -11.99503 -11.65523 -11.57747 -11.54726 -11.26634 -11.08547 -11.00145 -10.96218 -10.81758 -10.77824 -10.66829 -10.50481 -10.44213 -10.35437 -10.13540 -9.97676 -9.81560 -9.67737 -9.29534 -8.67252 -8.52385 -6.87040 -5.68091 -3.09602 2.76239 2.94587 3.39224 3.43714 3.44651 4.31491 4.36932 4.44803 4.48976 4.59709 4.83795 4.96044 4.99539 5.03947 5.18879 5.21013 5.22853 5.27812 5.35076 5.46727 5.49738 5.52499 5.55511 5.60514 5.66009 5.68424 5.69781 5.73892 5.77713 5.80822 5.84370 5.85882 5.87097 5.97288 6.02322 6.07829 6.13539 6.14256 6.23394 6.25297 6.27119 6.44942 6.50276 6.55194 6.69398 6.73560 7.46411 7.59376 7.82038 7.90386 8.29893 8.32805 9.19292 9.79573 10.44227 11.35846 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.003259 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.590928 B = 8589.898989 C = 9294.883607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.083 4.083 4 H 0.096 0.904 5 C -0.115 4.115 6 C -0.125 4.125 7 C -0.116 4.116 8 C -0.073 4.073 9 C -0.139 4.139 10 C 0.554 3.446 11 O -0.548 6.548 12 N -0.639 5.639 13 C 0.117 3.883 14 C -0.103 4.103 15 C 0.114 3.886 16 C -0.129 4.129 17 C 0.154 3.846 18 N -0.604 5.604 19 C -0.222 4.222 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.167 3.833 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.013 0.987 50 H 0.253 0.747 51 H 0.028 0.972 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.127 -11.707 -0.862 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.102 4.102 4 H 0.114 0.886 5 C -0.153 4.153 6 C -0.163 4.163 7 C -0.154 4.154 8 C -0.076 4.076 9 C -0.196 4.196 10 C 0.343 3.657 11 O -0.426 6.426 12 N -0.374 5.374 13 C -0.005 4.005 14 C -0.105 4.105 15 C -0.008 4.008 16 C -0.169 4.169 17 C 0.029 3.971 18 N -0.330 5.330 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.041 3.959 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.124 0.876 49 H 0.031 0.969 50 H 0.063 0.937 51 H 0.046 0.954 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -15.610 -11.436 -1.134 19.384 hybrid contribution 0.381 0.623 0.528 0.901 sum -15.229 -10.813 -0.606 18.687 Atomic orbital electron populations 1.21800 0.96078 1.01204 1.01910 1.21737 0.95586 0.96171 1.01830 1.21874 0.92211 0.96693 0.99397 0.88620 1.22450 0.97949 0.98360 0.96534 1.22506 0.94397 0.98364 1.01015 1.22555 0.98750 0.98980 0.95124 1.21326 0.96966 0.95830 0.93489 1.21991 1.01102 0.94010 1.02538 1.20030 0.79895 0.79177 0.86549 1.90635 1.50185 1.52570 1.49215 1.49730 1.03762 1.51127 1.32736 1.22916 0.88357 0.96396 0.92875 1.22183 0.95407 0.96219 0.96661 1.22984 0.80425 0.97567 0.99848 1.22775 0.92979 1.00364 1.00737 1.21962 0.95993 0.89614 0.89484 1.44601 1.00263 1.28470 1.59654 1.19016 0.91650 1.01467 1.22915 0.90591 1.24765 0.95874 0.98879 1.01021 1.69779 1.02281 1.35873 1.49200 0.86161 0.77687 0.81658 0.80046 1.21218 1.21565 1.21166 1.20715 0.88544 0.92302 0.94362 0.93070 0.92706 0.92764 0.91830 0.91842 0.91726 0.91576 0.91252 0.91458 0.90601 0.90435 0.92193 0.92170 0.91045 0.89941 0.90530 0.89955 0.89786 0.91897 0.91375 0.87606 0.96886 0.93670 0.95368 0.95895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.76 37.16 0.36 -0.91 16 2 C -0.12 -1.07 4.09 -26.73 -0.11 -1.18 16 3 C -0.08 -0.94 2.53 -89.50 -0.23 -1.17 16 4 H 0.10 1.34 6.40 -51.93 -0.33 1.00 16 5 C -0.12 -1.17 5.51 -25.00 -0.14 -1.30 16 6 C -0.13 -1.42 6.91 -24.67 -0.17 -1.59 16 7 C -0.12 -1.37 5.42 -25.07 -0.14 -1.51 16 8 C -0.07 -0.88 0.69 -154.54 -0.11 -0.98 16 9 C -0.14 -1.39 7.05 37.16 0.26 -1.13 16 10 C 0.55 8.51 6.71 -10.98 -0.07 8.44 16 11 O -0.55 -10.21 16.00 5.55 0.09 -10.12 16 12 N -0.64 -9.37 3.42 -185.44 -0.63 -10.00 16 13 C 0.12 1.71 8.01 -7.44 -0.06 1.65 16 14 C -0.10 -1.67 1.05 -155.10 -0.16 -1.83 16 15 C 0.11 1.57 5.61 -7.59 -0.04 1.53 16 16 C -0.13 -2.21 6.49 -25.21 -0.16 -2.37 16 17 C 0.15 3.51 5.90 -2.32 -0.01 3.49 16 18 N -0.60 -14.84 3.41 -170.38 -0.58 -15.42 16 19 C -0.22 -6.05 10.28 -15.06 -0.15 -6.20 16 20 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.13 10.09 55.49 0.56 -25.57 16 23 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.17 3.36 6.79 -3.61 -0.02 3.34 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.43 7.48 -51.93 -0.39 0.04 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.61 6.60 -51.93 -0.34 0.27 16 32 H 0.06 0.52 6.77 -51.93 -0.35 0.17 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.59 7.77 -51.93 -0.40 0.18 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 38 H 0.08 1.07 5.72 -51.93 -0.30 0.77 16 39 H 0.06 0.60 6.94 -51.93 -0.36 0.24 16 40 H 0.06 0.60 6.62 -51.93 -0.34 0.25 16 41 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 44 H 0.08 1.15 6.43 -51.93 -0.33 0.81 16 45 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 46 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 47 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.11 2.75 5.89 -51.93 -0.31 2.45 16 49 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 52 H 0.02 0.47 7.80 -51.93 -0.40 0.07 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -30.47 384.36 -10.06 -40.53 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -9.21 Total: 0.20 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -1.05 Total: -2.10 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.65 Total: -50.99 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.47 -10.06 -40.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072857528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.819 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds