Wall clock time and date at job start Tue Mar 31 2020 12:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47240 * 2 1 4 4 H 1.09000 * 110.01521 * 57.20035 * 3 2 1 5 5 C 1.54266 * 110.03541 * 295.80980 * 3 2 1 6 6 C 1.54884 * 104.19375 * 217.10462 * 5 3 2 7 7 C 1.54887 * 102.75040 * 37.94100 * 6 5 3 8 8 C 1.53873 * 110.03479 * 178.58755 * 3 2 1 9 9 C 1.52997 * 110.03560 * 238.57463 * 8 3 2 10 10 C 1.50709 * 110.02903 * 0.02562 * 8 3 2 11 11 O 1.21277 * 120.00191 * 107.75765 * 10 8 3 12 12 N 1.34777 * 119.99794 * 287.75464 * 10 8 3 13 13 C 1.47355 * 135.87621 * 354.73208 * 12 10 8 14 14 C 1.52262 * 87.46818 * 154.22321 * 13 12 10 15 15 C 1.47351 * 135.87805 * 175.10194 * 12 10 8 16 16 C 1.53728 * 116.39482 * 142.36934 * 14 13 12 17 17 C 1.55179 * 101.38554 * 165.09608 * 16 14 13 18 18 N 1.47560 * 105.03016 * 324.50818 * 17 16 14 19 19 C 1.36942 * 125.65359 * 203.93038 * 18 17 16 20 20 H 1.08001 * 119.99681 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00213 * 359.95950 * 19 18 17 22 22 N 1.31622 * 120.00142 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00023 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47043 * 89.99870 * 23 21 19 25 25 H 1.48497 * 109.47319 * 210.00444 * 23 21 19 26 26 H 1.48501 * 109.46994 * 330.00117 * 23 21 19 27 27 C 1.47393 * 108.68277 * 23.89632 * 18 17 16 28 28 H 1.08998 * 109.46983 * 59.99811 * 1 2 3 29 29 H 1.09001 * 109.47363 * 299.99835 * 1 2 3 30 30 H 1.09006 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46983 * 120.00189 * 2 1 3 32 32 H 1.09001 * 109.47363 * 240.00165 * 2 1 3 33 33 H 1.08999 * 110.48377 * 335.78413 * 5 3 2 34 34 H 1.08996 * 110.48276 * 98.28785 * 5 3 2 35 35 H 1.09000 * 110.75395 * 156.25973 * 6 5 3 36 36 H 1.09000 * 110.75349 * 279.62420 * 6 5 3 37 37 H 1.09001 * 110.48380 * 80.74100 * 7 6 5 38 38 H 1.08999 * 110.48331 * 203.24624 * 7 6 5 39 39 H 1.09001 * 109.47247 * 53.21107 * 9 8 3 40 40 H 1.09003 * 109.47076 * 173.21084 * 9 8 3 41 41 H 1.08998 * 109.46933 * 293.21226 * 9 8 3 42 42 H 1.08997 * 113.53484 * 268.84368 * 13 12 10 43 43 H 1.08996 * 113.53796 * 39.49619 * 13 12 10 44 44 H 1.09003 * 113.53264 * 320.50048 * 15 12 10 45 45 H 1.09001 * 113.53352 * 91.08347 * 15 12 10 46 46 H 1.09001 * 111.04123 * 283.12549 * 16 14 13 47 47 H 1.09000 * 111.03812 * 47.06840 * 16 14 13 48 48 H 1.09000 * 110.32556 * 205.61985 * 17 16 14 49 49 H 1.08993 * 110.32997 * 83.39816 * 17 16 14 50 50 H 0.96996 * 119.99671 * 180.02562 * 22 21 19 51 51 H 1.09004 * 109.99439 * 238.51902 * 27 18 17 52 52 H 1.08998 * 109.99335 * 117.19501 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6413 1.9792 0.8609 5 6 1.6213 2.1511 -1.3047 6 6 2.8305 3.0549 -1.6510 7 6 4.0407 2.1749 -1.2507 8 6 3.5783 1.4577 0.0356 9 6 4.0665 2.2224 1.2676 10 6 4.1080 0.0470 0.0589 11 8 4.6442 -0.4157 -0.9256 12 7 3.9860 -0.7003 1.1739 13 6 3.5054 -0.4779 2.5490 14 6 3.1995 -1.9682 2.6110 15 6 4.2810 -2.0939 1.5507 16 6 3.4703 -2.6661 3.9537 17 6 2.7007 -4.0005 3.7660 18 7 1.5063 -3.6455 2.9756 19 6 0.3301 -4.3463 2.9481 20 1 -0.4893 -4.0020 2.3344 21 6 0.1911 -5.4992 3.7085 22 7 1.1896 -5.9186 4.4565 23 14 -1.4136 -6.4547 3.6714 24 1 -1.3591 -7.4720 2.5909 25 1 -1.6176 -7.1306 4.9779 26 1 -2.5398 -5.5211 3.4160 27 6 1.7890 -2.4111 2.2214 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.4506 1.4221 -2.0969 34 1 0.7270 2.7526 -1.1420 35 1 2.8520 3.2795 -2.7174 36 1 2.8083 3.9720 -1.0624 37 1 4.2608 1.4499 -2.0343 38 1 4.9140 2.7957 -1.0504 39 1 3.5960 1.8110 2.1606 40 1 5.1491 2.1256 1.3499 41 1 3.8022 3.2753 1.1700 42 1 4.2893 -0.1655 3.2388 43 1 2.6181 0.1528 2.6033 44 1 4.0428 -2.8158 0.7695 45 1 5.2812 -2.2312 1.9618 46 1 4.5363 -2.8455 4.0935 47 1 3.0598 -2.0909 4.7835 48 1 2.4073 -4.4076 4.7336 49 1 3.3147 -4.7186 3.2226 50 1 1.0925 -6.7244 4.9876 51 1 1.0685 -1.6379 2.4885 52 1 1.7431 -2.6098 1.1507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072857529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:39 Heat of formation + Delta-G solvation = 3.086036 kcal Electronic energy + Delta-G solvation = -29724.126394 eV Core-core repulsion = 26110.436199 eV Total energy + Delta-G solvation = -3613.690194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.50246 -40.58122 -38.44000 -37.32375 -34.28753 -34.15949 -32.61307 -31.19083 -29.75525 -28.45422 -27.72366 -27.17140 -26.68611 -25.35182 -23.52428 -22.18517 -22.00925 -21.24094 -19.80405 -19.28310 -18.78088 -17.50827 -17.32262 -16.86823 -16.76749 -16.34771 -16.10235 -15.56338 -15.28681 -14.95706 -14.85811 -14.46006 -14.28865 -14.07410 -13.79431 -13.74686 -13.43648 -13.33340 -13.27609 -13.13876 -12.95181 -12.86353 -12.74426 -12.49735 -12.33058 -12.16763 -12.01478 -11.95158 -11.85695 -11.78626 -11.62687 -11.48015 -11.39357 -11.33151 -11.22030 -11.11748 -10.73423 -10.52708 -9.67963 -8.86933 -7.75957 -5.19659 1.46595 1.47909 1.56410 1.63383 1.82008 2.49598 3.23232 3.30014 3.41449 3.50789 3.56579 3.69461 3.73409 3.92902 4.14224 4.16546 4.19905 4.26520 4.33971 4.39511 4.42763 4.50068 4.50920 4.60270 4.63051 4.69091 4.72710 4.75161 4.80209 4.81981 4.84000 4.94233 4.96346 5.02817 5.04152 5.11973 5.13871 5.17327 5.19550 5.21229 5.22223 5.26926 5.33189 5.40423 5.47190 5.49098 5.53088 5.69349 5.85919 6.34232 6.76900 7.13233 7.13986 7.80120 8.43487 9.25394 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.003823 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.451739 B = 7322.975548 C = 8195.261211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.143 4.143 3 C -0.070 4.070 4 H 0.104 0.896 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.073 4.073 9 C -0.139 4.139 10 C 0.552 3.448 11 O -0.596 6.596 12 N -0.640 5.640 13 C 0.127 3.873 14 C -0.101 4.101 15 C 0.115 3.885 16 C -0.108 4.108 17 C 0.152 3.848 18 N -0.625 5.625 19 C -0.237 4.237 20 H 0.075 0.925 21 C -0.062 4.062 22 N -0.946 5.946 23 Si 0.974 3.026 24 H -0.292 1.292 25 H -0.290 1.290 26 H -0.269 1.269 27 C 0.171 3.829 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.024 0.976 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.044 0.956 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.074 0.926 49 H -0.019 1.019 50 H 0.247 0.753 51 H 0.038 0.962 52 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.765 21.842 -3.901 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.180 4.180 3 C -0.089 4.089 4 H 0.122 0.878 5 C -0.156 4.156 6 C -0.151 4.151 7 C -0.149 4.149 8 C -0.076 4.076 9 C -0.196 4.196 10 C 0.344 3.656 11 O -0.478 6.478 12 N -0.373 5.373 13 C 0.006 3.994 14 C -0.103 4.103 15 C -0.008 4.008 16 C -0.147 4.147 17 C 0.028 3.972 18 N -0.352 5.352 19 C -0.366 4.366 20 H 0.093 0.907 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.803 3.197 24 H -0.219 1.219 25 H -0.217 1.217 26 H -0.194 1.194 27 C 0.046 3.954 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.143 0.857 43 H 0.115 0.885 44 H 0.063 0.937 45 H 0.124 0.876 46 H 0.111 0.889 47 H 0.102 0.898 48 H 0.092 0.908 49 H -0.001 1.001 50 H 0.056 0.944 51 H 0.056 0.944 52 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 4.961 21.567 -4.533 22.590 hybrid contribution -0.651 -1.787 -0.505 1.968 sum 4.311 19.780 -5.038 20.862 Atomic orbital electron populations 1.21690 0.94867 1.00878 1.02567 1.22121 0.97097 0.97024 1.01788 1.21866 0.91082 0.95489 1.00444 0.87807 1.22452 0.99052 0.98256 0.95812 1.22468 0.92807 0.98033 1.01773 1.22418 0.99232 0.98163 0.95117 1.21562 0.96898 0.89634 0.99528 1.22034 1.01244 1.01257 0.95035 1.20702 0.76673 0.87867 0.80352 1.90634 1.46858 1.74502 1.35758 1.49861 1.63263 1.13007 1.11219 1.23190 1.00721 0.94524 0.81015 1.22030 0.94683 0.97042 0.96520 1.22874 0.99392 0.83360 0.95160 1.22596 1.00925 0.96212 0.94933 1.21796 0.85703 0.92959 0.96778 1.44926 1.12141 1.26610 1.51473 1.19375 0.90957 1.04500 1.21771 0.90687 1.25530 1.00994 0.99232 0.99747 1.70039 1.31653 1.24897 1.32941 0.85143 0.79571 0.78495 0.76525 1.21937 1.21667 1.19412 1.20815 0.93143 0.88363 0.93080 0.91807 0.91331 0.94870 0.89993 0.95748 0.93345 0.89442 0.90944 0.89075 0.93002 0.90224 0.90604 0.92545 0.89118 0.85737 0.88467 0.93747 0.87583 0.88876 0.89753 0.90775 1.00110 0.94353 0.94416 0.97908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.73 71.98 0.70 -2.80 16 2 C -0.14 -3.80 4.08 30.59 0.12 -3.68 16 3 C -0.07 -1.38 2.62 -10.07 -0.03 -1.41 16 4 H 0.10 1.59 7.67 -2.39 -0.02 1.57 16 5 C -0.12 -2.07 5.36 31.67 0.17 -1.90 16 6 C -0.11 -1.71 6.91 31.88 0.22 -1.49 16 7 C -0.11 -2.30 5.76 31.70 0.18 -2.12 16 8 C -0.07 -1.55 0.78 -52.17 -0.04 -1.59 16 9 C -0.14 -2.00 7.66 71.98 0.55 -1.45 16 10 C 0.55 16.57 4.94 87.66 0.43 17.00 16 11 O -0.60 -23.48 16.17 -3.02 -0.05 -23.53 16 12 N -0.64 -17.57 2.49 -859.07 -2.14 -19.71 16 13 C 0.13 2.72 5.06 83.71 0.42 3.14 16 14 C -0.10 -3.08 1.04 -52.55 -0.05 -3.13 16 15 C 0.11 3.52 7.90 83.62 0.66 4.18 16 16 C -0.11 -3.44 6.49 31.59 0.21 -3.24 16 17 C 0.15 7.19 5.90 86.92 0.51 7.70 16 18 N -0.63 -31.58 3.41 -692.96 -2.36 -33.94 16 19 C -0.24 -13.25 10.28 84.03 0.86 -12.38 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 22 N -0.95 -55.60 10.09 21.65 0.22 -55.38 16 23 Si 0.97 45.63 29.55 68.60 2.03 47.65 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 27 C 0.17 6.81 5.16 86.17 0.44 7.26 16 28 H 0.06 1.36 7.36 -2.39 -0.02 1.34 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.08 2.32 1.64 -2.39 0.00 2.32 16 32 H 0.02 0.80 7.53 -2.39 -0.02 0.78 16 33 H 0.05 1.04 7.79 -2.39 -0.02 1.02 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.05 1.43 6.78 -2.39 -0.02 1.42 16 38 H 0.08 1.40 7.85 -2.39 -0.02 1.38 16 39 H 0.08 0.95 5.52 -2.39 -0.01 0.94 16 40 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 41 H 0.09 0.91 8.13 -2.39 -0.02 0.89 16 42 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.10 1.82 6.62 -2.39 -0.02 1.81 16 44 H 0.04 1.65 8.06 -2.39 -0.02 1.63 16 45 H 0.11 2.74 8.04 -2.39 -0.02 2.72 16 46 H 0.09 2.44 7.98 -2.39 -0.02 2.43 16 47 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.07 3.99 5.89 -2.39 -0.01 3.98 16 49 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 50 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 51 H 0.04 1.45 7.77 -2.38 -0.02 1.43 16 52 H 0.00 0.13 7.60 -2.39 -0.02 0.12 16 Total: -1.00 -72.53 379.82 4.41 -68.12 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.88 Total: 15.74 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.84 Total: 1.05 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -4.29 Total: -109.03 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.05 Total: -23.53 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -72.53 4.41 -68.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072857529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.207 kcal (2) G-P(sol) polarization free energy of solvation -72.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds