Wall clock time and date at job start Tue Mar 31 2020 12:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47064 * 2 1 4 4 H 1.09003 * 109.46987 * 304.99814 * 3 2 1 5 5 C 1.52995 * 109.47419 * 65.00043 * 3 2 1 6 6 C 1.52996 * 109.47121 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47185 * 300.00008 * 6 5 3 8 8 C 1.52995 * 109.47098 * 59.99978 * 7 6 5 9 9 C 1.52996 * 109.47121 * 300.00061 * 8 7 6 10 10 H 1.09001 * 109.47202 * 299.99787 * 9 8 7 11 11 C 1.50700 * 109.46918 * 180.02562 * 9 8 7 12 12 O 1.21283 * 120.00179 * 240.00190 * 11 9 8 13 13 N 1.34772 * 120.00296 * 59.99999 * 11 9 8 14 14 C 1.47364 * 135.87641 * 359.63147 * 13 11 9 15 15 C 1.52228 * 87.48521 * 154.24998 * 14 13 11 16 16 C 1.47353 * 135.88331 * 179.97438 * 13 11 9 17 17 C 1.53723 * 116.40955 * 142.35118 * 15 14 13 18 18 C 1.55179 * 101.38207 * 165.06979 * 17 15 14 19 19 N 1.47550 * 105.03429 * 324.50749 * 18 17 15 20 20 C 1.36938 * 125.65973 * 203.85977 * 19 18 17 21 21 H 1.08008 * 119.99829 * 170.07176 * 20 19 18 22 22 C 1.38806 * 120.00127 * 350.07756 * 20 19 18 23 23 N 1.31617 * 119.99941 * 350.39747 * 22 20 19 24 24 Si 1.86801 * 120.00212 * 170.39427 * 22 20 19 25 25 H 1.48500 * 109.46757 * 94.14109 * 24 22 20 26 26 H 1.48496 * 109.47386 * 214.14219 * 24 22 20 27 27 H 1.48501 * 109.47089 * 334.14308 * 24 22 20 28 28 C 1.47402 * 108.68111 * 23.89447 * 19 18 17 29 29 H 1.08991 * 109.47328 * 60.00116 * 1 2 3 30 30 H 1.08999 * 109.46861 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47003 * 300.00067 * 1 2 3 32 32 H 1.08998 * 109.47393 * 239.99596 * 2 1 3 33 33 H 1.09000 * 109.47490 * 119.99802 * 2 1 3 34 34 H 1.08994 * 109.47201 * 59.99750 * 5 3 2 35 35 H 1.09005 * 109.46934 * 300.00303 * 5 3 2 36 36 H 1.09006 * 109.46934 * 179.97438 * 6 5 3 37 37 H 1.09001 * 109.47202 * 60.00213 * 6 5 3 38 38 H 1.09001 * 109.46759 * 299.99575 * 7 6 5 39 39 H 1.09004 * 109.46911 * 180.02562 * 7 6 5 40 40 H 1.09003 * 109.47228 * 60.00455 * 8 7 6 41 41 H 1.09005 * 109.46934 * 180.02562 * 8 7 6 42 42 H 1.08997 * 113.52971 * 268.88506 * 14 13 11 43 43 H 1.09001 * 113.52912 * 39.53305 * 14 13 11 44 44 H 1.08996 * 113.52937 * 320.46914 * 16 13 11 45 45 H 1.09005 * 113.53298 * 91.11445 * 16 13 11 46 46 H 1.08998 * 111.03914 * 283.09293 * 17 15 14 47 47 H 1.09000 * 111.04006 * 47.04029 * 17 15 14 48 48 H 1.09004 * 110.32714 * 205.61717 * 18 17 15 49 49 H 1.09003 * 110.41663 * 83.44251 * 18 17 15 50 50 H 0.97000 * 120.00422 * 179.97438 * 23 22 20 51 51 H 1.09002 * 109.99500 * 238.51473 * 28 19 18 52 52 H 1.08999 * 109.99015 * 117.19597 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1447 3.5693 1.3069 7 6 3.6695 3.5717 1.1809 8 6 4.0742 2.8876 -0.1264 9 6 3.5647 1.4449 -0.1261 10 1 3.9998 0.9062 0.7157 11 6 3.9639 0.7710 -1.4135 12 8 3.1127 0.3320 -2.1575 13 7 5.2669 0.6560 -1.7382 14 6 6.5482 1.0510 -1.1268 15 6 7.1920 -0.0926 -1.8982 16 6 6.0308 0.0862 -2.8620 17 6 8.5982 0.1687 -2.4615 18 6 9.0628 -1.2713 -2.8057 19 7 8.4835 -2.1231 -1.7493 20 6 8.9621 -3.3446 -1.3568 21 1 8.5684 -3.8193 -0.4701 22 6 9.9531 -3.9727 -2.0985 23 7 10.2996 -3.4924 -3.2739 24 14 10.7951 -5.4996 -1.4284 25 1 10.1093 -6.7106 -1.9463 26 1 12.2155 -5.5119 -1.8613 27 1 10.7299 -5.4901 0.0552 28 6 7.3036 -1.4414 -1.1872 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0698 1.5876 2.1491 35 1 0.5489 2.1253 1.3969 36 1 1.8559 4.0568 2.2382 37 1 1.7096 4.1080 0.4652 38 1 4.1044 3.0330 2.0228 39 1 4.0324 4.5995 1.1811 40 1 3.6392 3.4264 -0.9683 41 1 5.1605 2.8889 -0.2160 42 1 6.8943 2.0361 -1.4395 43 1 6.5739 0.9171 -0.0453 44 1 5.6237 -0.8547 -3.2322 45 1 6.2327 0.8024 -3.6586 46 1 8.5521 0.7895 -3.3563 47 1 9.2443 0.6188 -1.7077 48 1 10.1509 -1.3327 -2.7874 49 1 8.6837 -1.5697 -3.7832 50 1 10.9924 -3.9311 -3.7921 51 1 7.4367 -1.2884 -0.1162 52 1 6.4079 -2.0348 -1.3707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073091058.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:14 Heat of formation + Delta-G solvation = -15.232473 kcal Electronic energy + Delta-G solvation = -28476.001106 eV Core-core repulsion = 24861.516562 eV Total energy + Delta-G solvation = -3614.484545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.08997 -40.58619 -38.50082 -37.30781 -34.83572 -34.10882 -32.44527 -31.21132 -29.96626 -29.65506 -27.66612 -27.17273 -25.55806 -24.67193 -23.88952 -22.25422 -21.57344 -20.95174 -20.26240 -19.53471 -18.79045 -17.90307 -17.23890 -16.82832 -16.54886 -16.11950 -15.85274 -15.61192 -15.50483 -15.19159 -14.91758 -14.50708 -14.28400 -14.15969 -13.97045 -13.83529 -13.70302 -13.39262 -13.34830 -13.16991 -12.81349 -12.74035 -12.52602 -12.51885 -12.38808 -12.09564 -12.03275 -11.99581 -11.90310 -11.76372 -11.68986 -11.61482 -11.38363 -11.26561 -11.18023 -10.85500 -10.68430 -10.33833 -9.66443 -8.86428 -7.88714 -5.23012 1.45820 1.46593 1.56548 1.63121 1.84208 2.48769 3.22979 3.34853 3.41747 3.62614 3.65088 3.71333 3.77803 4.04737 4.13594 4.17103 4.18920 4.29004 4.36522 4.41138 4.45796 4.48297 4.52794 4.56619 4.59796 4.64981 4.71394 4.75362 4.81338 4.82774 4.86645 4.94741 4.97806 5.02605 5.10321 5.14488 5.17878 5.20563 5.21875 5.23869 5.29027 5.36783 5.39186 5.42695 5.45222 5.58680 5.62105 5.64245 5.77923 6.20746 6.79319 7.08862 7.16606 7.75926 8.42125 9.22982 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.002924 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.803657 B = 9573.725571 C =10059.353344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C -0.060 4.060 4 H 0.057 0.943 5 C -0.110 4.110 6 C -0.120 4.120 7 C -0.113 4.113 8 C -0.106 4.106 9 C -0.089 4.089 10 H 0.102 0.898 11 C 0.535 3.465 12 O -0.583 6.583 13 N -0.644 5.644 14 C 0.131 3.869 15 C -0.099 4.099 16 C 0.116 3.884 17 C -0.107 4.107 18 C 0.175 3.825 19 N -0.625 5.625 20 C -0.246 4.246 21 H 0.075 0.925 22 C -0.062 4.062 23 N -0.946 5.946 24 Si 0.976 3.024 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.268 1.268 28 C 0.164 3.836 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.043 0.957 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.035 0.965 49 H -0.008 1.008 50 H 0.248 0.752 51 H 0.040 0.960 52 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.505 19.053 10.380 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.079 4.079 4 H 0.076 0.924 5 C -0.148 4.148 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.144 4.144 9 C -0.110 4.110 10 H 0.120 0.880 11 C 0.327 3.673 12 O -0.464 6.464 13 N -0.378 5.378 14 C 0.009 3.991 15 C -0.101 4.101 16 C -0.007 4.007 17 C -0.146 4.146 18 C 0.051 3.949 19 N -0.352 5.352 20 C -0.375 4.375 21 H 0.093 0.907 22 C -0.255 4.255 23 N -0.595 5.595 24 Si 0.804 3.196 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.192 1.192 28 C 0.039 3.961 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.143 0.857 43 H 0.115 0.885 44 H 0.062 0.938 45 H 0.126 0.874 46 H 0.114 0.886 47 H 0.106 0.894 48 H 0.054 0.946 49 H 0.010 0.990 50 H 0.058 0.942 51 H 0.058 0.942 52 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -14.054 18.699 10.007 25.442 hybrid contribution 0.480 -1.757 -0.558 1.905 sum -13.574 16.942 9.448 23.676 Atomic orbital electron populations 1.21721 0.95033 1.01423 1.01876 1.21789 0.96936 0.96918 1.01644 1.20905 0.92064 0.96039 0.98848 0.92420 1.21630 1.01367 0.95979 0.95794 1.21572 0.95784 0.96069 1.02357 1.21521 0.95988 1.01159 0.96380 1.21547 1.01512 0.91888 0.99451 1.21357 0.98007 0.98057 0.93575 0.87987 1.20969 0.79440 0.78285 0.88557 1.90618 1.49692 1.51453 1.54660 1.49906 1.04625 1.58460 1.24790 1.23087 0.77939 0.98150 0.99905 1.21960 0.95066 0.95548 0.97490 1.22863 0.88043 0.98136 0.91624 1.22591 0.93670 0.96683 1.01625 1.21291 0.96736 0.87644 0.89271 1.44927 1.29438 1.18564 1.42239 1.19369 1.16673 0.95074 1.06388 0.90705 1.25626 1.01499 1.01988 0.96400 1.70150 1.33899 1.43001 1.12412 0.85116 0.77427 0.78908 0.78173 1.21743 1.21616 1.19237 1.20823 0.88463 0.90811 0.96030 0.93583 0.93213 0.91082 0.92786 0.92483 0.91339 0.90884 0.90480 0.92354 0.91007 0.90281 0.92387 0.90183 0.85662 0.88512 0.93843 0.87430 0.88608 0.89409 0.94617 0.98985 0.94239 0.94228 0.98332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.67 71.98 0.70 -2.18 16 2 C -0.14 -3.25 5.14 30.59 0.16 -3.09 16 3 C -0.06 -1.22 1.36 -10.79 -0.01 -1.24 16 4 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 5 C -0.11 -1.57 4.96 30.59 0.15 -1.42 16 6 C -0.12 -1.39 5.92 30.59 0.18 -1.21 16 7 C -0.11 -1.25 5.92 30.59 0.18 -1.07 16 8 C -0.11 -1.60 5.09 30.59 0.16 -1.45 16 9 C -0.09 -1.83 1.93 -11.54 -0.02 -1.86 16 10 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 11 C 0.54 15.64 7.08 87.66 0.62 16.26 16 12 O -0.58 -21.94 14.45 -3.04 -0.04 -21.99 16 13 N -0.64 -17.50 3.65 -859.06 -3.13 -20.63 16 14 C 0.13 2.71 6.11 83.70 0.51 3.22 16 15 C -0.10 -3.00 1.05 -52.57 -0.05 -3.06 16 16 C 0.12 3.53 7.89 83.61 0.66 4.19 16 17 C -0.11 -3.34 6.49 31.58 0.21 -3.14 16 18 C 0.18 8.29 5.44 86.93 0.47 8.76 16 19 N -0.63 -32.02 3.41 -692.95 -2.36 -34.39 16 20 C -0.25 -13.95 10.24 84.03 0.86 -13.09 16 21 H 0.08 4.12 7.85 -2.91 -0.02 4.09 16 22 C -0.06 -3.52 5.40 84.86 0.46 -3.06 16 23 N -0.95 -56.86 10.68 21.65 0.23 -56.62 16 24 Si 0.98 45.89 29.56 68.60 2.03 47.92 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 28 C 0.16 6.68 6.78 86.17 0.58 7.27 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.12 6.56 -2.39 -0.02 1.10 16 32 H 0.05 1.73 5.42 -2.39 -0.01 1.71 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.96 6.57 -2.38 -0.02 0.94 16 36 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.08 1.04 6.28 -2.38 -0.01 1.03 16 42 H 0.13 1.75 8.06 -2.39 -0.02 1.73 16 43 H 0.10 1.73 8.09 -2.39 -0.02 1.71 16 44 H 0.04 1.63 8.06 -2.39 -0.02 1.61 16 45 H 0.11 2.74 8.04 -2.38 -0.02 2.72 16 46 H 0.10 2.44 7.98 -2.39 -0.02 2.42 16 47 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.04 1.90 6.94 -2.38 -0.02 1.88 16 49 H -0.01 -0.42 8.06 -2.39 -0.02 -0.44 16 50 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 51 H 0.04 1.53 8.07 -2.39 -0.02 1.51 16 52 H 0.00 -0.06 7.91 -2.39 -0.02 -0.08 16 Total: -1.00 -73.02 389.41 3.39 -69.63 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.86 Total: 12.22 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 5.80 Total: 3.86 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -5.26 Total: -111.65 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.04 Total: -21.99 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -73.02 3.39 -69.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073091058.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.401 kcal (2) G-P(sol) polarization free energy of solvation -73.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds