Wall clock time and date at job start Tue Mar 31 2020 12:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47096 * 2 1 4 4 H 1.08996 * 109.46582 * 304.99670 * 3 2 1 5 5 C 1.52993 * 109.47047 * 65.00028 * 3 2 1 6 6 C 1.53004 * 109.47047 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46792 * 300.00176 * 6 5 3 8 8 C 1.52993 * 109.47468 * 60.00082 * 7 6 5 9 9 C 1.52998 * 109.46792 * 185.00205 * 3 2 1 10 10 H 1.08993 * 109.47398 * 59.99707 * 9 3 2 11 11 C 1.50706 * 109.47143 * 299.99504 * 9 3 2 12 12 O 1.21279 * 119.99572 * 0.02562 * 11 9 3 13 13 N 1.34773 * 120.00054 * 180.02562 * 11 9 3 14 14 C 1.47852 * 134.36393 * 180.02562 * 13 11 9 15 15 C 1.52568 * 85.65935 * 156.35147 * 14 13 11 16 16 C 1.47849 * 134.36238 * 359.97244 * 13 11 9 17 17 C 1.53861 * 115.91976 * 265.01613 * 15 14 13 18 18 C 1.55153 * 101.40938 * 264.41878 * 17 15 14 19 19 N 1.47542 * 105.01391 * 324.35959 * 18 17 15 20 20 C 1.36938 * 125.66244 * 203.91699 * 19 18 17 21 21 H 1.07998 * 120.00411 * 161.52526 * 20 19 18 22 22 C 1.38807 * 119.99582 * 341.52952 * 20 19 18 23 23 N 1.31621 * 120.00160 * 157.56002 * 22 20 19 24 24 Si 1.86794 * 120.00378 * 337.55610 * 22 20 19 25 25 H 1.48504 * 109.47220 * 84.53796 * 24 22 20 26 26 H 1.48506 * 109.47646 * 204.54023 * 24 22 20 27 27 H 1.48502 * 109.47226 * 324.53958 * 24 22 20 28 28 C 1.47365 * 108.67948 * 23.91925 * 19 18 17 29 29 H 1.08999 * 109.46762 * 60.00088 * 1 2 3 30 30 H 1.08997 * 109.46881 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46611 * 299.99965 * 1 2 3 32 32 H 1.08993 * 109.46735 * 239.99554 * 2 1 3 33 33 H 1.08999 * 109.46762 * 119.99912 * 2 1 3 34 34 H 1.09003 * 109.47306 * 299.99785 * 5 3 2 35 35 H 1.09004 * 109.47654 * 60.00067 * 5 3 2 36 36 H 1.09002 * 109.47175 * 59.99973 * 6 5 3 37 37 H 1.08995 * 109.46940 * 180.02562 * 6 5 3 38 38 H 1.09006 * 109.46889 * 179.97438 * 7 6 5 39 39 H 1.09004 * 109.46932 * 299.99335 * 7 6 5 40 40 H 1.09003 * 109.47306 * 179.97438 * 8 7 6 41 41 H 1.08996 * 109.47722 * 59.99423 * 8 7 6 42 42 H 1.09000 * 113.84147 * 42.16765 * 14 13 11 43 43 H 1.08998 * 113.83900 * 270.53945 * 14 13 11 44 44 H 1.09000 * 113.84372 * 89.46504 * 16 13 11 45 45 H 1.09004 * 113.84653 * 317.83403 * 16 13 11 46 46 H 1.09004 * 111.03208 * 146.38932 * 17 15 14 47 47 H 1.08995 * 111.07098 * 22.47135 * 17 15 14 48 48 H 1.09009 * 110.33197 * 205.47970 * 18 17 15 49 49 H 1.08997 * 110.33427 * 83.24907 * 18 17 15 50 50 H 0.96998 * 120.00639 * 179.97438 * 23 22 20 51 51 H 1.08996 * 109.98389 * 117.31544 * 28 19 18 52 52 H 1.09007 * 109.98105 * 238.61088 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 2.1448 3.5693 1.3070 7 6 3.6696 3.5716 1.1809 8 6 4.0743 2.8876 -0.1264 9 6 3.5649 1.4443 -0.1258 10 1 3.8532 0.9570 -1.0571 11 6 4.1658 0.6991 1.0382 12 8 3.4453 0.2140 1.8846 13 7 5.5038 0.5718 1.1384 14 6 6.4109 -0.0722 2.1123 15 6 7.4135 -0.1316 0.9639 16 6 6.6492 1.0196 0.3178 17 6 7.4467 -1.4477 0.1675 18 6 8.6095 -2.2003 0.8667 19 7 9.5848 -1.1516 1.2215 20 6 10.9254 -1.3437 1.4239 21 1 11.6033 -0.5039 1.3846 22 6 11.4130 -2.6179 1.6796 23 7 12.6767 -2.8989 1.4418 24 14 10.2760 -3.9339 2.3611 25 1 9.5435 -4.5823 1.2437 26 1 11.0767 -4.9533 3.0856 27 1 9.3036 -3.3124 3.2956 28 6 8.8767 0.1369 1.3221 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5490 2.1253 1.3969 35 1 2.0699 1.5875 2.1492 36 1 1.7098 4.1080 0.4652 37 1 1.8568 4.0564 2.2386 38 1 4.0325 4.5994 1.1803 39 1 4.1045 3.0329 2.0228 40 1 5.1606 2.8897 -0.2164 41 1 3.6393 3.4262 -0.9682 42 1 6.0705 -1.0507 2.4512 43 1 6.7153 0.5815 2.9297 44 1 7.0263 2.0057 0.5885 45 1 6.4963 0.8998 -0.7548 46 1 7.6748 -1.2640 -0.8824 47 1 6.5087 -1.9929 0.2723 48 1 9.0596 -2.9205 0.1833 49 1 8.2498 -2.7026 1.7646 50 1 13.0177 -3.7892 1.6208 51 1 8.9467 0.5220 2.3393 52 1 9.3062 0.8535 0.6218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073091060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:22 Heat of formation + Delta-G solvation = 8.222059 kcal Electronic energy + Delta-G solvation = -28868.015134 eV Core-core repulsion = 25254.547654 eV Total energy + Delta-G solvation = -3613.467480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.16769 -39.73238 -37.10535 -35.91939 -34.09943 -32.37613 -31.56568 -29.82432 -29.16403 -28.89089 -26.43775 -26.17316 -23.98504 -23.73716 -22.86747 -21.16466 -20.87991 -20.58105 -18.74969 -18.51120 -16.92686 -16.52293 -16.09333 -15.78905 -15.51994 -15.17579 -15.02485 -14.42774 -14.36804 -14.01443 -13.67455 -13.57418 -13.28715 -13.23137 -12.95691 -12.76928 -12.65560 -12.36021 -12.22745 -12.00091 -11.83998 -11.66532 -11.58345 -11.42280 -11.34631 -11.20931 -11.04954 -10.93039 -10.71719 -10.54315 -10.42760 -10.18521 -10.16609 -10.06996 -9.98780 -9.45058 -9.25713 -8.70601 -8.60123 -7.07639 -5.96517 -3.27079 2.64551 2.83150 3.33902 3.48303 3.49895 4.24435 4.38500 4.43409 4.49222 4.53560 4.68104 4.79029 4.87279 4.90699 4.95820 5.07267 5.17385 5.19938 5.24342 5.30821 5.33461 5.34198 5.37761 5.42505 5.50236 5.51264 5.53088 5.58139 5.70847 5.73365 5.76116 5.79923 5.86352 5.87291 5.94334 5.97203 6.01108 6.04915 6.08968 6.11638 6.23269 6.25402 6.35411 6.45837 6.50908 6.52756 6.60150 6.71494 7.66357 7.77422 8.22549 8.29010 8.80594 9.66734 10.14955 11.19554 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.024427 B = 0.003114 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.978902 B = 8988.386829 C = 9584.438288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C -0.061 4.061 4 H 0.070 0.930 5 C -0.129 4.129 6 C -0.118 4.118 7 C -0.122 4.122 8 C -0.111 4.111 9 C -0.100 4.100 10 H 0.092 0.908 11 C 0.543 3.457 12 O -0.537 6.537 13 N -0.640 5.640 14 C 0.124 3.876 15 C -0.106 4.106 16 C 0.117 3.883 17 C -0.105 4.105 18 C 0.112 3.888 19 N -0.609 5.609 20 C -0.242 4.242 21 H 0.093 0.907 22 C 0.022 3.978 23 N -0.908 5.908 24 Si 0.882 3.118 25 H -0.285 1.285 26 H -0.303 1.303 27 H -0.276 1.276 28 C 0.151 3.849 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.026 0.974 50 H 0.263 0.737 51 H 0.035 0.965 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.900 12.281 -4.902 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.080 4.080 4 H 0.088 0.912 5 C -0.166 4.166 6 C -0.156 4.156 7 C -0.159 4.159 8 C -0.149 4.149 9 C -0.121 4.121 10 H 0.110 0.890 11 C 0.334 3.666 12 O -0.416 6.416 13 N -0.375 5.375 14 C 0.002 3.998 15 C -0.107 4.107 16 C -0.006 4.006 17 C -0.143 4.143 18 C -0.013 4.013 19 N -0.336 5.336 20 C -0.369 4.369 21 H 0.110 0.890 22 C -0.176 4.176 23 N -0.552 5.552 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.231 1.231 27 H -0.202 1.202 28 C 0.025 3.975 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.043 0.957 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.267 11.919 -4.441 25.644 hybrid contribution -0.445 -0.793 0.384 0.987 sum -22.713 11.126 -4.057 25.615 Atomic orbital electron populations 1.21778 0.96292 1.01202 1.01331 1.21832 0.95567 0.96338 1.03377 1.20920 0.91996 0.96726 0.98359 0.91186 1.21891 1.00449 0.95152 0.99155 1.21536 0.95369 0.97366 1.01294 1.21552 0.96450 1.00377 0.97545 1.21563 1.01087 0.93573 0.98664 1.21368 0.96814 0.96485 0.97420 0.88988 1.20215 0.80064 0.79295 0.87069 1.90558 1.58627 1.49325 1.43044 1.50212 1.03612 1.55795 1.27852 1.23052 0.85577 0.98255 0.92918 1.22479 0.95701 0.96257 0.96264 1.23105 0.82621 0.98124 0.96760 1.22403 0.98801 0.94089 0.99012 1.22012 0.89715 0.92873 0.96725 1.44858 1.04622 1.02541 1.81532 1.18625 0.79475 0.95485 1.43327 0.88985 1.24986 0.95432 0.97051 1.00148 1.69839 1.14350 1.21201 1.49824 0.86997 0.80121 0.81824 0.79813 1.21241 1.23050 1.20227 1.21058 0.87685 0.90100 0.98633 0.93385 0.93140 0.92615 0.92960 0.89017 0.92283 0.88993 0.92401 0.92303 0.91879 0.92049 0.91235 0.90957 0.90099 0.89561 0.89343 0.89894 0.90555 0.91508 0.92186 0.95691 0.92687 0.94679 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 37.16 0.36 -0.98 16 2 C -0.13 -1.41 5.03 -26.73 -0.13 -1.55 16 3 C -0.06 -0.59 1.93 -90.62 -0.18 -0.77 16 4 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 5 C -0.13 -1.31 4.69 -26.73 -0.13 -1.44 16 6 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 7 C -0.12 -1.10 5.70 -26.74 -0.15 -1.25 16 8 C -0.11 -0.93 5.34 -26.71 -0.14 -1.07 16 9 C -0.10 -0.98 2.37 -91.74 -0.22 -1.20 16 10 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 11 C 0.54 7.00 5.59 -10.98 -0.06 6.94 16 12 O -0.54 -8.47 12.09 5.56 0.07 -8.40 16 13 N -0.64 -8.02 3.58 -185.67 -0.66 -8.69 16 14 C 0.12 1.73 8.08 -3.52 -0.03 1.71 16 15 C -0.11 -1.51 0.97 -154.72 -0.15 -1.66 16 16 C 0.12 1.27 6.22 -3.54 -0.02 1.25 16 17 C -0.10 -1.65 6.42 -25.14 -0.16 -1.81 16 18 C 0.11 2.34 4.71 -2.33 -0.01 2.33 16 19 N -0.61 -14.05 3.22 -170.35 -0.55 -14.60 16 20 C -0.24 -6.69 10.58 -15.06 -0.16 -6.85 16 21 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 22 C 0.02 0.64 5.43 -17.43 -0.09 0.55 16 23 N -0.91 -27.74 13.97 55.49 0.78 -26.96 16 24 Si 0.88 22.44 24.27 -169.99 -4.13 18.31 16 25 H -0.29 -6.98 6.49 56.52 0.37 -6.62 16 26 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 27 H -0.28 -6.95 6.66 56.52 0.38 -6.57 16 28 C 0.15 2.69 6.75 -3.56 -0.02 2.67 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.50 6.57 -51.93 -0.34 0.16 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.22 5.64 -51.93 -0.29 0.93 16 34 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 35 H 0.09 1.20 5.51 -51.93 -0.29 0.91 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.68 7.22 -51.93 -0.37 0.31 16 40 H 0.07 0.55 6.11 -51.93 -0.32 0.24 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 43 H 0.09 1.14 8.00 -51.93 -0.42 0.72 16 44 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 45 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 48 H 0.06 1.35 6.65 -51.92 -0.35 1.01 16 49 H 0.03 0.56 5.56 -51.93 -0.29 0.27 16 50 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 51 H 0.04 0.63 7.86 -51.93 -0.41 0.22 16 52 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -31.36 376.56 -9.63 -40.99 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -9.35 Total: -2.00 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.46 Total: -4.33 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.44 Total: -50.25 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.07 Total: -8.40 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.13 Total: 18.31 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.36 -9.63 -40.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073091060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.208 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds