Wall clock time and date at job start Tue Mar 31 2020 14:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46633 * 2 1 4 4 C 1.52995 * 109.47236 * 119.99950 * 2 1 3 5 5 C 1.53003 * 109.46868 * 60.00640 * 4 2 1 6 6 C 1.52991 * 109.47427 * 59.99744 * 5 4 2 7 7 C 1.53006 * 109.46999 * 300.00169 * 6 5 4 8 8 C 1.52990 * 109.47153 * 60.00146 * 7 6 5 9 9 H 1.08996 * 109.47800 * 60.00005 * 8 7 6 10 10 C 1.53006 * 109.47153 * 180.02562 * 8 7 6 11 11 C 1.50692 * 109.47092 * 294.99753 * 10 8 7 12 12 O 1.21287 * 120.00056 * 359.97438 * 11 10 8 13 13 N 1.34772 * 120.00268 * 179.97438 * 11 10 8 14 14 C 1.47894 * 134.34535 * 180.02562 * 13 11 10 15 15 C 1.52376 * 85.58999 * 156.47938 * 14 13 11 16 16 C 1.47890 * 134.34001 * 359.95339 * 13 11 10 17 17 C 1.53658 * 116.39466 * 141.35056 * 15 14 13 18 18 C 1.54601 * 102.73103 * 162.91476 * 17 15 14 19 19 N 1.47141 * 107.36432 * 339.24561 * 18 17 15 20 20 C 1.36935 * 125.58360 * 179.07720 * 19 18 17 21 21 H 1.08001 * 119.99846 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00248 * 359.97218 * 20 19 18 23 23 N 1.31616 * 120.00182 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99981 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47180 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47320 * 120.00299 * 24 22 20 27 27 H 1.48501 * 109.47108 * 240.00326 * 24 22 20 28 28 C 1.47724 * 108.82658 * 359.07620 * 19 18 17 29 29 H 1.09001 * 109.46633 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46967 * 299.99432 * 1 2 3 31 31 H 1.08996 * 109.47217 * 60.00084 * 1 2 3 32 32 H 1.08998 * 109.47194 * 300.00447 * 4 2 1 33 33 H 1.09000 * 109.47281 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.46598 * 299.99262 * 5 4 2 35 35 H 1.08996 * 109.46849 * 180.02562 * 5 4 2 36 36 H 1.09003 * 109.47566 * 179.97438 * 6 5 4 37 37 H 1.09007 * 109.47445 * 59.99698 * 6 5 4 38 38 H 1.08996 * 109.46763 * 299.99516 * 7 6 5 39 39 H 1.09007 * 109.47046 * 179.97438 * 7 6 5 40 40 H 1.09004 * 109.47083 * 174.99678 * 10 8 7 41 41 H 1.08997 * 109.46748 * 54.99754 * 10 8 7 42 42 H 1.09001 * 113.85162 * 42.31275 * 14 13 11 43 43 H 1.09001 * 113.85024 * 270.64556 * 14 13 11 44 44 H 1.08996 * 113.85375 * 89.35294 * 16 13 11 45 45 H 1.09005 * 113.97012 * 317.69857 * 16 13 11 46 46 H 1.09004 * 110.75790 * 281.22415 * 17 15 14 47 47 H 1.08997 * 110.75644 * 44.41442 * 17 15 14 48 48 H 1.08995 * 109.87113 * 98.69158 * 18 17 15 49 49 H 1.09004 * 109.86509 * 219.80142 * 18 17 15 50 50 H 0.97002 * 120.00536 * 180.02562 * 23 22 20 51 51 H 1.09008 * 110.39563 * 263.65893 * 28 19 18 52 52 H 1.08998 * 110.39789 * 141.24889 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.5302 -2.1638 1.2491 6 6 2.0402 -2.8849 -0.0001 7 6 1.5301 -2.1636 -1.2494 8 6 2.0401 -0.7212 -1.2493 9 1 3.1300 -0.7210 -1.2493 10 6 1.5295 0.0004 -2.4982 11 6 2.1299 -0.6346 -3.7259 12 8 2.8916 -1.5717 -3.6131 13 7 1.8205 -0.1613 -4.9492 14 6 2.2096 -0.5276 -6.3282 15 6 0.9051 0.1389 -6.7477 16 6 0.9557 0.9304 -5.4468 17 6 0.9434 0.9575 -8.0475 18 6 -0.5540 1.1002 -8.4045 19 7 -1.2774 0.0298 -7.7001 20 6 -2.6302 -0.1780 -7.7406 21 1 -3.0679 -0.9952 -7.1865 22 6 -3.4392 0.6617 -8.4939 23 7 -2.9059 1.6574 -9.1695 24 14 -5.2848 0.3786 -8.5486 25 1 -5.6304 -0.7965 -7.7090 26 1 -5.9857 1.5805 -8.0295 27 1 -5.7057 0.1270 -9.9503 28 6 -0.3049 -0.7837 -6.9420 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 -0.2074 2.1392 33 1 3.1301 -0.7208 1.2494 34 1 0.4402 -2.1638 1.2492 35 1 1.8932 -2.6774 2.1393 36 1 1.6773 -3.9128 0.0000 37 1 3.1302 -2.8848 -0.0002 38 1 0.4402 -2.1637 -1.2493 39 1 1.8939 -2.6771 -2.1394 40 1 1.8178 1.0507 -2.4544 41 1 0.4432 -0.0766 -2.5436 42 1 2.2334 -1.6023 -6.5087 43 1 3.1019 -0.0138 -6.6856 44 1 1.4643 1.8904 -5.5345 45 1 -0.0050 1.0018 -4.9368 46 1 1.3943 1.9349 -7.8753 47 1 1.4800 0.4182 -8.8280 48 1 -0.9218 2.0728 -8.0779 49 1 -0.6901 0.9930 -9.4807 50 1 -3.4712 2.2444 -9.6956 51 1 -0.0212 -1.6673 -7.5139 52 1 -0.7215 -1.0723 -5.9770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073478354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:35 Heat of formation + Delta-G solvation = -15.772217 kcal Electronic energy + Delta-G solvation = -28238.426010 eV Core-core repulsion = 24623.918060 eV Total energy + Delta-G solvation = -3614.507950 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.83915 -40.61499 -39.05789 -37.18494 -34.12952 -33.74145 -32.54985 -31.45024 -30.15569 -28.68562 -27.60380 -27.32466 -26.65019 -25.13030 -23.23056 -22.44644 -22.06807 -20.31855 -19.50846 -19.30452 -18.79201 -17.84108 -17.09503 -16.80338 -16.62330 -16.55309 -15.97340 -15.60639 -15.57016 -15.08112 -14.90637 -14.58501 -14.21762 -14.00325 -13.87589 -13.72110 -13.64359 -13.40237 -13.25316 -13.19852 -12.87173 -12.79360 -12.63612 -12.42555 -12.42153 -12.19950 -11.97996 -11.94078 -11.90803 -11.71255 -11.65976 -11.62368 -11.28206 -11.07815 -11.04053 -10.79482 -10.68125 -10.45154 -9.64055 -8.87094 -7.83311 -5.18049 1.47091 1.47718 1.57664 1.67511 1.85634 2.49987 3.28825 3.37878 3.50037 3.67780 3.70899 3.76497 3.80119 3.94569 4.14756 4.20876 4.23137 4.31896 4.35774 4.45614 4.50587 4.51323 4.55287 4.60102 4.64664 4.70078 4.74456 4.77037 4.78872 4.83489 4.89314 4.91323 4.98828 5.04139 5.09283 5.12998 5.13769 5.20757 5.21577 5.24299 5.29043 5.33936 5.43346 5.47595 5.49243 5.59346 5.69975 5.73717 5.83289 6.22597 6.75832 7.13655 7.19474 7.79446 8.43374 9.26605 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.003026 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.595607 B = 9251.743738 C =10294.584678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 H 0.079 0.921 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.058 4.058 9 H 0.061 0.939 10 C -0.128 4.128 11 C 0.528 3.472 12 O -0.581 6.581 13 N -0.644 5.644 14 C 0.127 3.873 15 C -0.099 4.099 16 C 0.130 3.870 17 C -0.113 4.113 18 C 0.185 3.815 19 N -0.624 5.624 20 C -0.240 4.240 21 H 0.076 0.924 22 C -0.061 4.061 23 N -0.947 5.947 24 Si 0.973 3.027 25 H -0.269 1.269 26 H -0.290 1.290 27 H -0.294 1.294 28 C 0.161 3.839 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.018 0.982 49 H 0.004 0.996 50 H 0.247 0.753 51 H 0.020 0.980 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.774 -0.635 18.059 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.097 0.903 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.152 4.152 7 C -0.158 4.158 8 C -0.077 4.077 9 H 0.080 0.920 10 C -0.167 4.167 11 C 0.320 3.680 12 O -0.462 6.462 13 N -0.379 5.379 14 C 0.004 3.996 15 C -0.101 4.101 16 C 0.008 3.992 17 C -0.152 4.152 18 C 0.060 3.940 19 N -0.351 5.351 20 C -0.369 4.369 21 H 0.094 0.906 22 C -0.254 4.254 23 N -0.596 5.596 24 Si 0.802 3.198 25 H -0.194 1.194 26 H -0.217 1.217 27 H -0.221 1.221 28 C 0.035 3.965 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.096 0.904 46 H 0.113 0.887 47 H 0.096 0.904 48 H 0.036 0.964 49 H 0.022 0.978 50 H 0.056 0.944 51 H 0.038 0.962 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.035 -1.129 18.242 21.883 hybrid contribution -1.246 -0.235 -0.748 1.473 sum 10.789 -1.364 17.493 20.598 Atomic orbital electron populations 1.22005 0.95035 1.02046 1.02020 1.21117 0.96143 0.99211 0.93617 0.90296 1.21542 1.00455 0.95471 0.97421 1.21570 1.01045 0.95819 0.97180 1.21473 1.00301 0.98775 0.94698 1.21675 1.00063 0.95747 0.98275 1.20842 0.99698 0.94531 0.92610 0.92047 1.21788 1.02259 1.01624 0.91045 1.20950 0.80222 0.82904 0.83966 1.90631 1.38628 1.30567 1.86390 1.50345 1.47560 1.34961 1.05032 1.23001 0.96897 1.01017 0.78638 1.22292 0.94922 0.97225 0.95622 1.23081 0.94264 0.91498 0.90381 1.22524 0.96486 1.00525 0.95634 1.20992 0.88353 0.90613 0.94027 1.44847 1.02365 1.32672 1.55205 1.19410 0.82494 1.10737 1.24307 0.90585 1.25547 1.02122 0.97942 0.99825 1.70169 1.34429 1.19645 1.35357 0.85087 0.80323 0.77384 0.76999 1.19389 1.21684 1.22101 1.21107 0.88597 0.92656 0.94096 0.92538 0.91837 0.92714 0.90759 0.92196 0.91601 0.91426 0.92370 0.92792 0.92345 0.93170 0.87197 0.88431 0.90939 0.87069 0.86722 0.90408 0.88655 0.90412 0.96403 0.97783 0.94392 0.96224 0.94948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.15 71.98 0.59 -1.81 16 2 C -0.08 -1.30 2.72 -10.79 -0.03 -1.33 16 3 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.11 -1.60 5.45 30.59 0.17 -1.44 16 5 C -0.12 -1.83 5.65 30.59 0.17 -1.66 16 6 C -0.11 -2.25 5.92 30.59 0.18 -2.07 16 7 C -0.12 -2.79 4.67 30.59 0.14 -2.65 16 8 C -0.06 -1.20 1.61 -10.79 -0.02 -1.22 16 9 H 0.06 1.45 7.96 -2.39 -0.02 1.43 16 10 C -0.13 -2.73 4.41 29.85 0.13 -2.60 16 11 C 0.53 15.04 7.77 87.66 0.68 15.73 16 12 O -0.58 -20.41 14.69 -3.05 -0.04 -20.45 16 13 N -0.64 -17.40 3.62 -863.58 -3.12 -20.52 16 14 C 0.13 3.29 8.21 85.91 0.71 4.00 16 15 C -0.10 -2.98 0.99 -52.16 -0.05 -3.03 16 16 C 0.13 3.32 7.92 85.90 0.68 4.00 16 17 C -0.11 -3.57 6.36 31.36 0.20 -3.37 16 18 C 0.18 8.54 5.39 86.80 0.47 9.01 16 19 N -0.62 -30.93 3.41 -693.33 -2.36 -33.29 16 20 C -0.24 -13.26 10.28 84.03 0.86 -12.39 16 21 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 22 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 23 N -0.95 -55.43 10.30 21.65 0.22 -55.21 16 24 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 C 0.16 6.37 6.63 86.28 0.57 6.94 16 29 H 0.06 0.95 4.81 -2.39 -0.01 0.94 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.88 6.54 -2.39 -0.02 0.86 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.01 6.43 -2.39 -0.02 0.99 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.06 1.33 6.43 -2.39 -0.02 1.31 16 39 H 0.05 1.49 5.95 -2.38 -0.01 1.47 16 40 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.10 2.06 6.70 -2.39 -0.02 2.04 16 42 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 43 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.11 2.31 8.04 -2.39 -0.02 2.29 16 45 H 0.08 2.16 8.12 -2.38 -0.02 2.14 16 46 H 0.09 2.45 7.99 -2.38 -0.02 2.44 16 47 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.02 0.91 7.38 -2.39 -0.02 0.90 16 49 H 0.00 0.21 7.49 -2.39 -0.02 0.19 16 50 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 51 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 52 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 Total: -1.00 -67.88 386.26 3.51 -64.37 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.87 Total: 14.75 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 5.92 Total: 3.17 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -5.26 Total: -109.03 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.04 Total: -20.45 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -67.88 3.51 -64.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073478354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.593 kcal (2) G-P(sol) polarization free energy of solvation -67.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds