Wall clock time and date at job start Tue Mar 31 2020 12:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47305 * 2 1 4 4 H 1.08999 * 109.99892 * 54.13504 * 3 2 1 5 5 C 1.54336 * 109.99192 * 293.09494 * 3 2 1 6 6 H 1.09002 * 110.66711 * 337.04649 * 5 3 2 7 7 N 1.46494 * 110.84817 * 100.19799 * 5 3 2 8 8 C 1.34778 * 120.00009 * 200.14447 * 7 5 3 9 9 O 1.21285 * 119.99795 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99990 * 180.02562 * 8 7 5 11 11 H 1.09001 * 109.79493 * 59.19002 * 10 8 7 12 12 C 1.54921 * 109.80280 * 298.30316 * 10 8 7 13 13 C 1.52721 * 108.57153 * 183.44200 * 12 10 8 14 14 C 1.50810 * 108.95307 * 302.18575 * 13 12 10 15 15 C 1.31659 * 118.08792 * 104.85643 * 14 13 12 16 16 C 1.50514 * 116.92498 * 0.27479 * 15 14 13 17 17 C 1.49510 * 113.04505 * 275.42954 * 16 15 14 18 18 C 1.51395 * 117.51683 * 79.71660 * 17 16 15 19 19 C 1.55160 * 103.01977 * 218.67076 * 5 3 2 20 20 C 1.54902 * 101.58455 * 35.30228 * 19 5 3 21 21 N 1.47023 * 109.88208 * 175.23115 * 3 2 1 22 22 C 1.36943 * 125.64864 * 298.39531 * 21 3 2 23 23 H 1.08004 * 119.99469 * 347.55495 * 22 21 3 24 24 C 1.38813 * 120.00169 * 167.83472 * 22 21 3 25 25 N 1.31610 * 119.99779 * 359.71937 * 24 22 21 26 26 Si 1.86796 * 119.99862 * 179.72248 * 24 22 21 27 27 H 1.48501 * 109.47305 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47052 * 119.99700 * 26 24 22 29 29 H 1.48501 * 109.47307 * 239.99920 * 26 24 22 30 30 H 1.09002 * 109.46840 * 65.44384 * 1 2 3 31 31 H 1.08998 * 109.47404 * 185.44465 * 1 2 3 32 32 H 1.09000 * 109.47144 * 305.45064 * 1 2 3 33 33 H 1.09006 * 109.46921 * 239.99478 * 2 1 3 34 34 H 1.09005 * 109.46935 * 120.00200 * 2 1 3 35 35 H 0.97003 * 120.00087 * 20.15355 * 7 5 3 36 36 H 1.08997 * 109.62655 * 303.16433 * 12 10 8 37 37 H 1.09002 * 109.62296 * 63.71909 * 12 10 8 38 38 H 1.09004 * 109.55985 * 182.34701 * 13 12 10 39 39 H 1.08995 * 109.56181 * 62.02641 * 13 12 10 40 40 H 1.07999 * 120.95323 * 284.83462 * 14 13 12 41 41 H 1.07995 * 121.53732 * 180.29642 * 15 14 13 42 42 H 1.09000 * 108.77097 * 154.51177 * 16 15 14 43 43 H 1.08997 * 108.77004 * 36.35051 * 16 15 14 44 44 H 1.08997 * 107.83217 * 317.68540 * 17 16 15 45 45 H 1.08999 * 107.83923 * 201.74854 * 17 16 15 46 46 H 1.09002 * 109.26325 * 165.92749 * 18 17 16 47 47 H 1.08996 * 109.26363 * 46.46207 * 18 17 16 48 48 H 1.09005 * 111.00034 * 277.23114 * 19 5 3 49 49 H 1.09001 * 111.00170 * 153.38562 * 19 5 3 50 50 H 1.09003 * 110.36908 * 204.15193 * 20 19 5 51 51 H 1.09003 * 110.36070 * 81.83483 * 20 19 5 52 52 H 0.97006 * 119.99993 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5985 1.9939 0.8301 5 6 1.6795 2.1295 -1.3341 6 1 1.5217 1.3888 -2.1180 7 7 0.4958 2.9788 -1.1801 8 6 -0.2210 3.3385 -2.2632 9 8 0.1136 2.9588 -3.3654 10 6 -1.4384 4.2126 -2.1047 11 1 -1.1563 5.1579 -1.6410 12 6 -2.4925 3.4905 -1.2287 13 6 -3.7450 4.3616 -1.1576 14 6 -3.3723 5.7104 -0.5952 15 6 -3.2995 6.7296 -1.4255 16 6 -3.6044 6.4525 -2.8732 17 6 -2.4223 5.9416 -3.6328 18 6 -2.0734 4.4763 -3.4812 19 6 2.9361 2.9885 -1.6356 20 6 4.0696 2.0823 -1.0938 21 7 3.5057 1.4545 0.1149 22 6 4.2278 0.9592 1.1678 23 1 3.7288 0.6977 2.0893 24 6 5.6018 0.7988 1.0528 25 7 6.2098 1.1175 -0.0701 26 14 6.5878 0.1305 2.4917 27 1 5.6756 -0.1484 3.6299 28 1 7.2697 -1.1242 2.0843 29 1 7.6020 1.1333 2.9051 30 1 -0.3633 0.4271 -0.9347 31 1 -0.3634 -1.0230 0.0975 32 1 -0.3633 0.5960 0.8371 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.2280 3.2822 -0.2985 36 1 -2.7414 2.5275 -1.6745 37 1 -2.0938 3.3404 -0.2254 38 1 -4.4829 3.8876 -0.5103 39 1 -4.1606 4.4855 -2.1576 40 1 -3.1713 5.8366 0.4583 41 1 -3.0330 7.7187 -1.0837 42 1 -3.9505 7.3739 -3.3413 43 1 -4.4029 5.7126 -2.9280 44 1 -1.5530 6.5250 -3.3293 45 1 -2.5963 6.1355 -4.6912 46 1 -1.3689 4.1916 -4.2627 47 1 -2.9797 3.8788 -3.5795 48 1 2.9009 3.9350 -1.0961 49 1 3.0474 3.1552 -2.7070 50 1 4.9440 2.6807 -0.8379 51 1 4.3314 1.3217 -1.8294 52 1 7.1699 1.0051 -0.1507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087621377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:25 Heat of formation + Delta-G solvation = -12.207376 kcal Electronic energy + Delta-G solvation = -28578.930052 eV Core-core repulsion = 24964.576686 eV Total energy + Delta-G solvation = -3614.353367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.28039 -38.71847 -37.48424 -34.05832 -33.43024 -33.08790 -32.69591 -31.60661 -29.03542 -27.54858 -26.65171 -25.81603 -24.31518 -22.54141 -22.01220 -21.43468 -20.27044 -20.02926 -19.26565 -18.22715 -17.19239 -16.83410 -16.03084 -15.90302 -15.14443 -14.79899 -14.69856 -14.33447 -14.02110 -13.89768 -13.79634 -13.58756 -13.45935 -13.03201 -12.69824 -12.60770 -12.23054 -11.97858 -11.91515 -11.65593 -11.63923 -11.45359 -11.11678 -11.08282 -10.95752 -10.88770 -10.82674 -10.59944 -10.56791 -10.42023 -10.23116 -10.19887 -10.04866 -9.73267 -9.64097 -9.42522 -9.12842 -8.63161 -8.52342 -6.82255 -5.74047 -3.10544 1.99487 2.87826 3.37711 3.42207 3.45951 3.47442 4.39289 4.47505 4.52967 4.72630 4.76578 4.84108 4.89186 5.13588 5.19154 5.24752 5.34493 5.36313 5.38076 5.45710 5.54059 5.54806 5.56001 5.64356 5.74995 5.76381 5.80913 5.83050 5.87372 5.91733 5.93714 6.01654 6.06530 6.18335 6.25181 6.29386 6.37518 6.42697 6.46515 6.47682 6.60694 6.65964 6.71299 6.76915 6.96051 7.17361 7.54173 7.60736 7.79949 7.82424 8.26986 8.51217 9.18455 9.79611 10.46787 11.36932 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.002936 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.955401 B = 9535.550366 C = 9785.946373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.034 0.966 5 C 0.138 3.862 6 H 0.090 0.910 7 N -0.713 5.713 8 C 0.515 3.485 9 O -0.544 6.544 10 C -0.109 4.109 11 H 0.099 0.901 12 C -0.102 4.102 13 C -0.107 4.107 14 C -0.156 4.156 15 C -0.162 4.162 16 C -0.096 4.096 17 C -0.114 4.114 18 C -0.110 4.110 19 C -0.156 4.156 20 C 0.172 3.828 21 N -0.595 5.595 22 C -0.226 4.226 23 H 0.076 0.924 24 C -0.005 4.005 25 N -0.917 5.917 26 Si 0.910 3.090 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.396 0.604 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.079 0.921 51 H 0.025 0.975 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.845 8.974 -3.125 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.052 0.948 5 C 0.034 3.966 6 H 0.108 0.892 7 N -0.363 5.363 8 C 0.301 3.699 9 O -0.421 6.421 10 C -0.131 4.131 11 H 0.117 0.883 12 C -0.140 4.140 13 C -0.144 4.144 14 C -0.174 4.174 15 C -0.180 4.180 16 C -0.133 4.133 17 C -0.151 4.151 18 C -0.147 4.147 19 C -0.195 4.195 20 C 0.047 3.953 21 N -0.319 5.319 22 C -0.354 4.354 23 H 0.094 0.906 24 C -0.202 4.202 25 N -0.564 5.564 26 Si 0.741 3.259 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.230 0.770 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.097 0.903 51 H 0.043 0.957 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.344 8.649 -3.879 22.444 hybrid contribution 0.565 -0.180 1.304 1.432 sum -19.779 8.469 -2.575 21.670 Atomic orbital electron populations 1.21762 0.97255 1.00456 1.00900 1.22018 0.93618 0.99207 1.02344 1.21058 0.87166 0.93325 0.93093 0.94828 1.22076 0.83667 0.92344 0.98561 0.89217 1.46076 1.28773 1.52005 1.09433 1.20552 0.84179 0.80694 0.84450 1.90657 1.70516 1.55515 1.25462 1.21986 0.93310 0.99236 0.98520 0.88270 1.21815 0.94384 0.98199 0.99568 1.21039 0.97440 0.93702 1.02210 1.23089 1.00418 0.94703 0.99166 1.23030 1.01322 0.98514 0.95136 1.20093 0.98686 1.01157 0.93373 1.20495 0.98336 0.96417 0.99873 1.21469 1.01152 0.95630 0.96470 1.23410 0.96751 0.99068 1.00301 1.21481 0.93292 0.93164 0.87354 1.44482 0.98508 1.69287 1.19647 1.19000 0.89404 1.35909 0.91108 0.90614 1.24871 0.96901 1.01215 0.97213 1.69938 1.08832 1.53041 1.24569 0.86075 0.80090 0.78373 0.81392 1.20475 1.21718 1.21778 0.93296 0.93732 0.93460 0.92458 0.91711 0.76986 0.91085 0.91333 0.91353 0.89663 0.87149 0.86977 0.91934 0.90839 0.92378 0.92197 0.89246 0.91649 0.92169 0.91973 0.90303 0.95731 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.66 37.16 0.36 -1.76 16 2 C -0.13 -2.44 5.43 -26.74 -0.15 -2.58 16 3 C 0.16 3.19 2.92 -66.95 -0.20 2.99 16 4 H 0.03 0.65 7.69 -51.93 -0.40 0.25 16 5 C 0.14 2.49 2.00 -66.09 -0.13 2.36 16 6 H 0.09 1.77 7.33 -51.93 -0.38 1.39 16 7 N -0.71 -10.23 4.95 -52.02 -0.26 -10.49 16 8 C 0.52 7.43 7.17 -10.98 -0.08 7.35 16 9 O -0.54 -9.94 14.95 5.55 0.08 -9.86 16 10 C -0.11 -1.15 2.21 -90.31 -0.20 -1.35 16 11 H 0.10 1.01 6.29 -51.93 -0.33 0.68 16 12 C -0.10 -0.88 4.83 -25.86 -0.12 -1.01 16 13 C -0.11 -0.79 5.42 -27.97 -0.15 -0.94 16 14 C -0.16 -1.17 8.55 -36.12 -0.31 -1.48 16 15 C -0.16 -1.22 9.28 -36.27 -0.34 -1.56 16 16 C -0.10 -0.70 5.13 -29.70 -0.15 -0.85 16 17 C -0.11 -0.97 4.90 -29.26 -0.14 -1.11 16 18 C -0.11 -1.12 4.96 -27.09 -0.13 -1.25 16 19 C -0.16 -3.10 6.77 -24.58 -0.17 -3.26 16 20 C 0.17 4.20 5.46 -2.54 -0.01 4.18 16 21 N -0.59 -14.68 3.13 -162.57 -0.51 -15.19 16 22 C -0.23 -6.10 9.73 -15.06 -0.15 -6.25 16 23 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 24 C -0.01 -0.15 5.47 -17.43 -0.10 -0.24 16 25 N -0.92 -26.63 10.48 55.49 0.58 -26.05 16 26 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H 0.05 0.70 7.49 -51.93 -0.39 0.32 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.13 8.03 -51.93 -0.42 0.72 16 34 H 0.06 1.29 7.85 -51.93 -0.41 0.88 16 35 H 0.40 4.83 8.00 -40.82 -0.33 4.51 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.56 7.86 -51.93 -0.41 0.16 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.62 3.56 -51.93 -0.18 0.44 16 40 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.51 5.63 -51.93 -0.29 0.22 16 44 H 0.06 0.54 7.71 -51.93 -0.40 0.14 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 1.14 6.47 -51.93 -0.34 0.80 16 47 H 0.06 0.61 6.57 -51.93 -0.34 0.26 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.08 2.13 6.74 -51.93 -0.35 1.78 16 51 H 0.02 0.65 8.11 -51.93 -0.42 0.23 16 52 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -30.41 386.96 -10.61 -41.02 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -9.15 Total: 4.70 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.17 Total: -6.75 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.18 Total: -51.73 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.41 -10.61 -41.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087621377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.812 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds