Wall clock time and date at job start Tue Mar 31 2020 12:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47305 * 2 1 4 4 H 1.08999 * 109.99892 * 54.13504 * 3 2 1 5 5 C 1.54336 * 109.99192 * 293.09494 * 3 2 1 6 6 H 1.09002 * 110.66711 * 337.04649 * 5 3 2 7 7 N 1.46494 * 110.84817 * 100.19799 * 5 3 2 8 8 C 1.34778 * 120.00009 * 200.14447 * 7 5 3 9 9 O 1.21285 * 119.99795 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99990 * 180.02562 * 8 7 5 11 11 H 1.09001 * 109.79493 * 59.19002 * 10 8 7 12 12 C 1.54921 * 109.80280 * 298.30316 * 10 8 7 13 13 C 1.52721 * 108.57153 * 183.44200 * 12 10 8 14 14 C 1.50810 * 108.95307 * 302.18575 * 13 12 10 15 15 C 1.31659 * 118.08792 * 104.85643 * 14 13 12 16 16 C 1.50514 * 116.92498 * 0.27479 * 15 14 13 17 17 C 1.49510 * 113.04505 * 275.42954 * 16 15 14 18 18 C 1.51395 * 117.51683 * 79.71660 * 17 16 15 19 19 C 1.55160 * 103.01977 * 218.67076 * 5 3 2 20 20 C 1.54902 * 101.58455 * 35.30228 * 19 5 3 21 21 N 1.47023 * 109.88208 * 175.23115 * 3 2 1 22 22 C 1.36943 * 125.64864 * 298.39531 * 21 3 2 23 23 H 1.08004 * 119.99469 * 347.55495 * 22 21 3 24 24 C 1.38813 * 120.00169 * 167.83472 * 22 21 3 25 25 N 1.31610 * 119.99779 * 359.71937 * 24 22 21 26 26 Si 1.86796 * 119.99862 * 179.72248 * 24 22 21 27 27 H 1.48501 * 109.47305 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47052 * 119.99700 * 26 24 22 29 29 H 1.48501 * 109.47307 * 239.99920 * 26 24 22 30 30 H 1.09002 * 109.46840 * 65.44384 * 1 2 3 31 31 H 1.08998 * 109.47404 * 185.44465 * 1 2 3 32 32 H 1.09000 * 109.47144 * 305.45064 * 1 2 3 33 33 H 1.09006 * 109.46921 * 239.99478 * 2 1 3 34 34 H 1.09005 * 109.46935 * 120.00200 * 2 1 3 35 35 H 0.97003 * 120.00087 * 20.15355 * 7 5 3 36 36 H 1.08997 * 109.62655 * 303.16433 * 12 10 8 37 37 H 1.09002 * 109.62296 * 63.71909 * 12 10 8 38 38 H 1.09004 * 109.55985 * 182.34701 * 13 12 10 39 39 H 1.08995 * 109.56181 * 62.02641 * 13 12 10 40 40 H 1.07999 * 120.95323 * 284.83462 * 14 13 12 41 41 H 1.07995 * 121.53732 * 180.29642 * 15 14 13 42 42 H 1.09000 * 108.77097 * 154.51177 * 16 15 14 43 43 H 1.08997 * 108.77004 * 36.35051 * 16 15 14 44 44 H 1.08997 * 107.83217 * 317.68540 * 17 16 15 45 45 H 1.08999 * 107.83923 * 201.74854 * 17 16 15 46 46 H 1.09002 * 109.26325 * 165.92749 * 18 17 16 47 47 H 1.08996 * 109.26363 * 46.46207 * 18 17 16 48 48 H 1.09005 * 111.00034 * 277.23114 * 19 5 3 49 49 H 1.09001 * 111.00170 * 153.38562 * 19 5 3 50 50 H 1.09003 * 110.36908 * 204.15193 * 20 19 5 51 51 H 1.09003 * 110.36070 * 81.83483 * 20 19 5 52 52 H 0.97006 * 119.99993 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5985 1.9939 0.8301 5 6 1.6795 2.1295 -1.3341 6 1 1.5217 1.3888 -2.1180 7 7 0.4958 2.9788 -1.1801 8 6 -0.2210 3.3385 -2.2632 9 8 0.1136 2.9588 -3.3654 10 6 -1.4384 4.2126 -2.1047 11 1 -1.1563 5.1579 -1.6410 12 6 -2.4925 3.4905 -1.2287 13 6 -3.7450 4.3616 -1.1576 14 6 -3.3723 5.7104 -0.5952 15 6 -3.2995 6.7296 -1.4255 16 6 -3.6044 6.4525 -2.8732 17 6 -2.4223 5.9416 -3.6328 18 6 -2.0734 4.4763 -3.4812 19 6 2.9361 2.9885 -1.6356 20 6 4.0696 2.0823 -1.0938 21 7 3.5057 1.4545 0.1149 22 6 4.2278 0.9592 1.1678 23 1 3.7288 0.6977 2.0893 24 6 5.6018 0.7988 1.0528 25 7 6.2098 1.1175 -0.0701 26 14 6.5878 0.1305 2.4917 27 1 5.6756 -0.1484 3.6299 28 1 7.2697 -1.1242 2.0843 29 1 7.6020 1.1333 2.9051 30 1 -0.3633 0.4271 -0.9347 31 1 -0.3634 -1.0230 0.0975 32 1 -0.3633 0.5960 0.8371 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.2280 3.2822 -0.2985 36 1 -2.7414 2.5275 -1.6745 37 1 -2.0938 3.3404 -0.2254 38 1 -4.4829 3.8876 -0.5103 39 1 -4.1606 4.4855 -2.1576 40 1 -3.1713 5.8366 0.4583 41 1 -3.0330 7.7187 -1.0837 42 1 -3.9505 7.3739 -3.3413 43 1 -4.4029 5.7126 -2.9280 44 1 -1.5530 6.5250 -3.3293 45 1 -2.5963 6.1355 -4.6912 46 1 -1.3689 4.1916 -4.2627 47 1 -2.9797 3.8788 -3.5795 48 1 2.9009 3.9350 -1.0961 49 1 3.0474 3.1552 -2.7070 50 1 4.9440 2.6807 -0.8379 51 1 4.3314 1.3217 -1.8294 52 1 7.1699 1.0051 -0.1507 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087621377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:24 Heat of formation + Delta-G solvation = -28.650854 kcal Electronic energy + Delta-G solvation = -28579.643095 eV Core-core repulsion = 24964.576686 eV Total energy + Delta-G solvation = -3615.066409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.39310 -39.88923 -38.79135 -35.63240 -34.44787 -34.08522 -33.74672 -33.33328 -30.84351 -28.56805 -27.80589 -26.84350 -26.06046 -23.84813 -22.83930 -22.51059 -21.92798 -21.45088 -20.55475 -18.80973 -18.76609 -18.22224 -17.40535 -16.75892 -16.67679 -16.02898 -15.77269 -15.62128 -15.54251 -15.31431 -14.78664 -14.64093 -14.40846 -14.34615 -13.93533 -13.78676 -13.56842 -13.32587 -13.23293 -12.90165 -12.86390 -12.71632 -12.55539 -12.33808 -12.20955 -12.17123 -12.02213 -11.96049 -11.87607 -11.71384 -11.67022 -11.56282 -11.35940 -11.27658 -10.80963 -10.73088 -10.63282 -9.95545 -9.69166 -8.85264 -7.84295 -5.22626 1.44552 1.47038 1.47779 1.57945 1.71578 2.20039 2.52056 3.34684 3.55467 3.72377 3.75111 3.84126 3.90985 3.93698 4.12156 4.18780 4.19904 4.24796 4.37124 4.41386 4.46974 4.55732 4.58902 4.61845 4.66208 4.72113 4.75643 4.79392 4.88669 4.96430 5.00339 5.01876 5.11757 5.13416 5.17501 5.20637 5.23945 5.30027 5.32536 5.41493 5.46311 5.47595 5.51213 5.55832 5.57627 5.70288 5.71981 5.92778 6.12032 6.23259 6.64699 7.08837 7.34401 7.76816 8.43404 9.26201 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.002936 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.955401 B = 9535.550366 C = 9785.946373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.160 3.840 4 H 0.053 0.947 5 C 0.157 3.843 6 H 0.073 0.927 7 N -0.701 5.701 8 C 0.515 3.485 9 O -0.584 6.584 10 C -0.098 4.098 11 H 0.108 0.892 12 C -0.098 4.098 13 C -0.104 4.104 14 C -0.159 4.159 15 C -0.169 4.169 16 C -0.095 4.095 17 C -0.108 4.108 18 C -0.107 4.107 19 C -0.141 4.141 20 C 0.181 3.819 21 N -0.614 5.614 22 C -0.229 4.229 23 H 0.084 0.916 24 C -0.065 4.065 25 N -0.951 5.951 26 Si 0.976 3.024 27 H -0.262 1.262 28 H -0.296 1.296 29 H -0.293 1.293 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.411 0.589 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.046 0.954 51 H -0.010 1.010 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.864 9.730 -1.494 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.070 0.930 5 C 0.051 3.949 6 H 0.091 0.909 7 N -0.352 5.352 8 C 0.303 3.697 9 O -0.464 6.464 10 C -0.119 4.119 11 H 0.126 0.874 12 C -0.136 4.136 13 C -0.140 4.140 14 C -0.177 4.177 15 C -0.187 4.187 16 C -0.131 4.131 17 C -0.146 4.146 18 C -0.145 4.145 19 C -0.181 4.181 20 C 0.055 3.945 21 N -0.338 5.338 22 C -0.358 4.358 23 H 0.102 0.898 24 C -0.258 4.258 25 N -0.600 5.600 26 Si 0.804 3.196 27 H -0.187 1.187 28 H -0.223 1.223 29 H -0.221 1.221 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.248 0.752 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.064 0.936 51 H 0.008 0.992 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -23.428 9.418 -2.214 25.347 hybrid contribution 1.471 -0.403 0.751 1.700 sum -21.957 9.015 -1.463 23.781 Atomic orbital electron populations 1.21644 0.93595 1.01975 1.01855 1.21908 0.96732 0.97533 1.00471 1.21246 0.84472 0.94605 0.94358 0.92980 1.21598 0.84322 0.91878 0.97074 0.90937 1.45872 1.27454 1.51383 1.10515 1.21274 0.84697 0.80198 0.83489 1.90655 1.71640 1.57028 1.27079 1.21984 0.91887 0.98724 0.99354 0.87368 1.21821 0.94271 0.98036 0.99454 1.21012 0.96906 0.93467 1.02648 1.23204 1.00290 0.94658 0.99583 1.23156 1.01371 0.98941 0.95195 1.20068 0.98088 1.01713 0.93269 1.20439 0.98651 0.94995 1.00511 1.21431 1.00771 0.97018 0.95299 1.23218 0.96009 0.98758 1.00135 1.21166 0.93921 0.92495 0.86929 1.44722 1.00758 1.69309 1.19039 1.19369 0.89826 1.34676 0.91967 0.89795 1.25688 0.98144 1.02296 0.99713 1.70155 1.08507 1.54702 1.26608 0.85048 0.78538 0.77048 0.78936 1.18653 1.22349 1.22063 0.93135 0.92264 0.91342 0.94752 0.93225 0.75175 0.91380 0.90291 0.90128 0.89553 0.86464 0.86474 0.91038 0.90216 0.93229 0.91756 0.92103 0.90610 0.91073 0.91940 0.93603 0.99204 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.66 71.98 0.70 -2.79 16 2 C -0.13 -4.58 5.43 30.59 0.17 -4.42 16 3 C 0.16 6.18 2.92 45.34 0.13 6.31 16 4 H 0.05 1.87 7.69 -2.39 -0.02 1.85 16 5 C 0.16 5.60 2.00 46.19 0.09 5.69 16 6 H 0.07 2.89 7.33 -2.39 -0.02 2.88 16 7 N -0.70 -18.78 4.95 -436.89 -2.16 -20.94 16 8 C 0.52 14.14 7.17 87.66 0.63 14.76 16 9 O -0.58 -21.26 14.95 -3.04 -0.05 -21.30 16 10 C -0.10 -1.85 2.21 -10.59 -0.02 -1.88 16 11 H 0.11 1.91 6.29 -2.39 -0.02 1.89 16 12 C -0.10 -1.39 4.83 31.16 0.15 -1.24 16 13 C -0.10 -1.18 5.42 29.79 0.16 -1.02 16 14 C -0.16 -1.88 8.55 25.07 0.21 -1.67 16 15 C -0.17 -2.06 9.28 24.97 0.23 -1.83 16 16 C -0.09 -1.13 5.13 28.67 0.15 -0.98 16 17 C -0.11 -1.65 4.90 28.95 0.14 -1.51 16 18 C -0.11 -2.03 4.96 30.36 0.15 -1.88 16 19 C -0.14 -5.70 6.77 31.98 0.22 -5.48 16 20 C 0.18 9.19 5.46 86.85 0.47 9.66 16 21 N -0.61 -30.77 3.13 -668.25 -2.09 -32.86 16 22 C -0.23 -12.49 9.73 84.03 0.82 -11.67 16 23 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 24 C -0.07 -3.69 5.47 84.86 0.46 -3.22 16 25 N -0.95 -57.44 10.48 21.65 0.23 -57.22 16 26 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 27 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 30 H 0.05 1.32 7.49 -2.39 -0.02 1.30 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.03 1.37 8.03 -2.38 -0.02 1.35 16 34 H 0.05 1.93 7.85 -2.38 -0.02 1.91 16 35 H 0.41 8.72 8.00 -92.71 -0.74 7.98 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 0.97 7.86 -2.39 -0.02 0.96 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.98 3.56 -2.39 -0.01 0.97 16 40 H 0.12 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.12 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.87 5.63 -2.39 -0.01 0.86 16 44 H 0.05 0.84 7.71 -2.39 -0.02 0.82 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 1.54 6.47 -2.39 -0.02 1.52 16 47 H 0.08 1.26 6.57 -2.39 -0.02 1.24 16 48 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 49 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 50 H 0.05 2.61 6.74 -2.39 -0.02 2.59 16 51 H -0.01 -0.57 8.11 -2.39 -0.02 -0.59 16 52 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -68.33 386.96 2.97 -65.36 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.15 Total: 22.64 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 4.86 Total: -3.15 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -4.03 Total: -111.01 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.30 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.33 2.97 -65.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087621377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.713 kcal (2) G-P(sol) polarization free energy of solvation -68.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds