Wall clock time and date at job start Tue Mar 31 2020 12:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47479 * 2 1 4 4 H 1.08997 * 109.99479 * 55.02173 * 3 2 1 5 5 C 1.54322 * 109.88324 * 293.92904 * 3 2 1 6 6 H 1.09009 * 110.87341 * 336.81977 * 5 3 2 7 7 N 1.46496 * 110.72379 * 100.01951 * 5 3 2 8 8 C 1.34772 * 120.00490 * 199.97364 * 7 5 3 9 9 O 1.21281 * 119.99789 * 0.02562 * 8 7 5 10 10 C 1.50700 * 120.00253 * 180.27713 * 8 7 5 11 11 C 1.53005 * 109.64046 * 298.62113 * 10 8 7 12 12 C 1.53022 * 109.64350 * 177.98603 * 10 8 7 13 13 C 1.50073 * 110.14888 * 289.75237 * 12 10 8 14 14 C 1.29442 * 124.07168 * 342.86869 * 13 12 10 15 15 C 1.50693 * 117.96533 * 180.49096 * 14 13 12 16 16 C 1.50074 * 124.07555 * 0.46917 * 14 13 12 17 17 C 1.53021 * 110.14884 * 342.86773 * 16 14 13 18 18 C 1.55158 * 102.94194 * 218.38905 * 5 3 2 19 19 C 1.54903 * 101.58199 * 35.49748 * 18 5 3 20 20 N 1.47023 * 109.88319 * 176.11793 * 3 2 1 21 21 C 1.36938 * 125.64651 * 298.39085 * 20 3 2 22 22 H 1.07997 * 120.00100 * 345.69839 * 21 20 3 23 23 C 1.38818 * 119.99447 * 165.69454 * 21 20 3 24 24 N 1.31617 * 120.00313 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99482 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47389 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47067 * 120.00157 * 25 23 21 28 28 H 1.48499 * 109.47111 * 239.99984 * 25 23 21 29 29 H 1.09001 * 109.46913 * 301.61713 * 1 2 3 30 30 H 1.08996 * 109.47632 * 61.62277 * 1 2 3 31 31 H 1.09001 * 109.47070 * 181.62120 * 1 2 3 32 32 H 1.09001 * 109.46954 * 240.00023 * 2 1 3 33 33 H 1.09003 * 109.47307 * 120.00376 * 2 1 3 34 34 H 0.97006 * 119.99552 * 19.97655 * 7 5 3 35 35 H 1.08997 * 109.47109 * 59.99399 * 11 10 8 36 36 H 1.08998 * 109.47229 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.46618 * 300.00127 * 11 10 8 38 38 H 1.09002 * 109.35919 * 49.95517 * 12 10 8 39 39 H 1.09001 * 109.36127 * 169.54264 * 12 10 8 40 40 H 1.07992 * 117.96346 * 162.84204 * 13 12 10 41 41 H 1.09007 * 109.47173 * 269.98350 * 15 14 13 42 42 H 1.09007 * 109.46842 * 29.97557 * 15 14 13 43 43 H 1.08997 * 109.47982 * 149.97916 * 15 14 13 44 44 H 1.09002 * 109.35706 * 222.66072 * 16 14 13 45 45 H 1.09003 * 109.35686 * 103.07814 * 16 14 13 46 46 H 1.08996 * 109.64508 * 289.75058 * 17 16 14 47 47 H 1.08994 * 109.64321 * 169.11947 * 17 16 14 48 48 H 1.08994 * 111.00605 * 153.57773 * 18 5 3 49 49 H 1.09006 * 110.99684 * 277.38636 * 18 5 3 50 50 H 1.08998 * 110.36560 * 81.83293 * 19 18 5 51 51 H 1.09003 * 110.36554 * 204.04528 * 19 18 5 52 52 H 0.96998 * 119.99871 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6107 1.9896 0.8393 5 6 1.6600 2.1335 -1.3265 6 1 1.4946 1.3982 -2.1140 7 7 0.4754 2.9772 -1.1507 8 6 -0.2567 3.3427 -2.2216 9 8 0.0650 2.9727 -3.3309 10 6 -1.4717 4.2158 -2.0414 11 6 -2.4945 3.4978 -1.1586 12 6 -2.0905 4.5242 -3.4065 13 6 -1.1991 5.4506 -4.1808 14 6 -0.2539 6.1587 -3.6509 15 6 0.5518 7.0531 -4.5573 16 6 0.0891 6.1447 -2.1900 17 6 -1.0623 5.5398 -1.3839 18 6 2.9095 2.9993 -1.6376 19 6 4.0531 2.0932 -1.1175 20 7 3.5072 1.4540 0.0936 21 6 4.2445 0.9534 1.1333 22 1 3.7639 0.7153 2.0707 23 6 5.6097 0.7519 0.9822 24 7 6.1954 1.0425 -0.1600 25 14 6.6153 0.0684 2.4003 26 1 5.7271 -0.1745 3.5653 27 1 7.2492 -1.2094 1.9869 28 1 7.6691 1.0449 2.7757 29 1 -0.3633 0.5388 0.8751 30 1 -0.3634 0.4884 -0.9041 31 1 -0.3633 -1.0273 0.0291 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.2179 3.2729 -0.2634 35 1 -2.0512 3.2892 -0.1849 36 1 -3.3722 4.1313 -1.0304 37 1 -2.7890 2.5611 -1.6319 38 1 -2.2179 3.5960 -3.9636 39 1 -3.0637 4.9943 -3.2642 40 1 -1.3557 5.5311 -5.2462 41 1 1.4119 6.5032 -4.9396 42 1 -0.0698 7.3805 -5.3908 43 1 0.8962 7.9226 -3.9975 44 1 0.2702 7.1649 -1.8516 45 1 0.9896 5.5500 -2.0360 46 1 -1.9093 6.2259 -1.3833 47 1 -0.7358 5.3551 -0.3606 48 1 3.0064 3.1747 -2.7090 49 1 2.8776 3.9418 -1.0909 50 1 4.3081 1.3392 -1.8622 51 1 4.9293 2.6925 -0.8701 52 1 7.1493 0.9021 -0.2654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087837388.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:56 Heat of formation + Delta-G solvation = -38.706672 kcal Electronic energy + Delta-G solvation = -29283.585062 eV Core-core repulsion = 25668.082599 eV Total energy + Delta-G solvation = -3615.502462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.80434 -39.88816 -38.26190 -35.64828 -35.00174 -34.18132 -33.40520 -31.69232 -30.80510 -29.64033 -28.09904 -26.46213 -25.63109 -24.33157 -24.12062 -23.14893 -22.07630 -21.41270 -20.47859 -18.87337 -18.74063 -17.45059 -16.84572 -16.70262 -16.37082 -15.89378 -15.66525 -15.51449 -15.27740 -15.11219 -14.87254 -14.55490 -14.36279 -14.06032 -13.81212 -13.56787 -13.42650 -13.32840 -13.23119 -13.20278 -13.03383 -12.88216 -12.78662 -12.68738 -12.54580 -12.48449 -12.20242 -12.16433 -12.01934 -11.96313 -11.86321 -11.57696 -11.36499 -11.29895 -11.06673 -10.70619 -10.51243 -9.91208 -9.50246 -8.83443 -7.85387 -5.23521 1.44634 1.46875 1.47879 1.57932 1.81092 2.22143 2.52268 3.34785 3.54148 3.61092 3.75508 3.77228 3.85485 3.93270 4.12072 4.18387 4.21541 4.35034 4.39092 4.40971 4.46528 4.55751 4.61880 4.65832 4.71521 4.74411 4.76587 4.84046 4.87493 4.89543 4.95479 4.98636 5.01848 5.03835 5.09703 5.16848 5.20338 5.21259 5.27129 5.30754 5.34319 5.37360 5.47213 5.51024 5.57222 5.70042 5.71871 5.82670 6.20445 6.23041 6.69872 7.08737 7.41309 7.76691 8.44157 9.26129 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.003670 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.337958 B = 7628.062503 C = 8482.714987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.160 3.840 4 H 0.054 0.946 5 C 0.161 3.839 6 H 0.069 0.931 7 N -0.703 5.703 8 C 0.526 3.474 9 O -0.579 6.579 10 C -0.075 4.075 11 C -0.138 4.138 12 C -0.064 4.064 13 C -0.154 4.154 14 C -0.144 4.144 15 C -0.119 4.119 16 C -0.091 4.091 17 C -0.101 4.101 18 C -0.137 4.137 19 C 0.183 3.817 20 N -0.612 5.612 21 C -0.230 4.230 22 H 0.084 0.916 23 C -0.063 4.063 24 N -0.951 5.951 25 Si 0.974 3.026 26 H -0.262 1.262 27 H -0.296 1.296 28 H -0.293 1.293 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.409 0.591 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.049 0.951 46 H 0.098 0.902 47 H 0.086 0.914 48 H 0.057 0.943 49 H 0.071 0.929 50 H -0.010 1.010 51 H 0.040 0.960 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.931 10.790 -1.523 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.054 3.946 4 H 0.071 0.929 5 C 0.055 3.945 6 H 0.087 0.913 7 N -0.354 5.354 8 C 0.314 3.686 9 O -0.457 6.457 10 C -0.078 4.078 11 C -0.196 4.196 12 C -0.101 4.101 13 C -0.172 4.172 14 C -0.144 4.144 15 C -0.176 4.176 16 C -0.128 4.128 17 C -0.138 4.138 18 C -0.177 4.177 19 C 0.058 3.942 20 N -0.337 5.337 21 C -0.359 4.359 22 H 0.102 0.898 23 C -0.256 4.256 24 N -0.599 5.599 25 Si 0.803 3.197 26 H -0.186 1.186 27 H -0.224 1.224 28 H -0.220 1.220 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.246 0.754 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.117 0.883 47 H 0.104 0.896 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.008 0.992 51 H 0.059 0.941 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -20.499 10.478 -2.253 23.132 hybrid contribution 1.582 -0.681 0.349 1.757 sum -18.917 9.797 -1.903 21.388 Atomic orbital electron populations 1.21649 0.93621 1.01878 1.01959 1.21904 0.96699 0.97633 1.00392 1.21240 0.84398 0.94533 0.94473 0.92879 1.21528 0.84305 0.91795 0.96862 0.91305 1.45853 1.27121 1.51900 1.10531 1.21023 0.84397 0.79617 0.83605 1.90673 1.71827 1.56952 1.26289 1.20952 0.92883 0.95438 0.98494 1.21874 0.98437 1.00507 0.98748 1.20332 0.98377 0.98533 0.92877 1.21886 0.98298 0.97595 0.99414 1.20951 0.97534 0.99616 0.96259 1.20923 0.99261 0.98566 0.98813 1.20487 0.98377 1.01986 0.91946 1.21727 0.99040 0.94289 0.98780 1.23169 0.96033 0.98686 0.99831 1.21097 0.93766 0.92283 0.87091 1.44683 1.00684 1.68703 1.19610 1.19360 0.90317 1.34669 0.91597 0.89820 1.25708 0.98461 1.02062 0.99391 1.70157 1.09613 1.54656 1.25509 0.85069 0.78570 0.77100 0.78967 1.18595 1.22369 1.22043 0.91224 0.93145 0.92371 0.94962 0.93194 0.75362 0.90830 0.88880 0.92662 0.91936 0.87729 0.88326 0.93337 0.91242 0.91181 0.89496 0.93210 0.88317 0.89576 0.92443 0.91019 0.99246 0.94143 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.68 71.98 0.70 -2.84 16 2 C -0.13 -4.61 5.42 30.59 0.17 -4.45 16 3 C 0.16 6.19 2.93 45.34 0.13 6.33 16 4 H 0.05 1.89 7.69 -2.39 -0.02 1.87 16 5 C 0.16 5.76 1.93 46.18 0.09 5.85 16 6 H 0.07 2.79 7.35 -2.38 -0.02 2.78 16 7 N -0.70 -18.74 4.62 -436.92 -2.02 -20.75 16 8 C 0.53 14.39 4.74 87.66 0.42 14.81 16 9 O -0.58 -21.29 14.95 -3.03 -0.05 -21.33 16 10 C -0.07 -1.37 0.64 -52.79 -0.03 -1.41 16 11 C -0.14 -1.77 8.41 71.98 0.61 -1.16 16 12 C -0.06 -1.24 4.55 29.66 0.13 -1.10 16 13 C -0.15 -3.46 8.52 27.04 0.23 -3.23 16 14 C -0.14 -3.24 5.65 -15.10 -0.09 -3.33 16 15 C -0.12 -2.44 9.87 71.23 0.70 -1.74 16 16 C -0.09 -1.86 5.27 29.66 0.16 -1.70 16 17 C -0.10 -1.53 4.78 30.73 0.15 -1.39 16 18 C -0.14 -5.55 6.77 31.98 0.22 -5.33 16 19 C 0.18 9.35 5.41 86.85 0.47 9.82 16 20 N -0.61 -30.66 3.13 -668.28 -2.09 -32.75 16 21 C -0.23 -12.53 9.73 84.03 0.82 -11.71 16 22 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 23 C -0.06 -3.55 5.47 84.86 0.46 -3.09 16 24 N -0.95 -57.58 10.56 21.65 0.23 -57.35 16 25 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 26 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 28 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.34 7.18 -2.39 -0.02 1.32 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.03 1.31 8.05 -2.39 -0.02 1.29 16 33 H 0.05 1.95 7.88 -2.39 -0.02 1.93 16 34 H 0.41 8.63 7.37 -92.70 -0.68 7.95 16 35 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 1.43 7.74 -2.39 -0.02 1.41 16 39 H 0.10 1.40 8.11 -2.39 -0.02 1.38 16 40 H 0.10 2.17 7.81 -2.91 -0.02 2.15 16 41 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.07 1.23 7.90 -2.38 -0.02 1.22 16 43 H 0.07 1.24 8.03 -2.39 -0.02 1.22 16 44 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 45 H 0.05 1.29 7.41 -2.39 -0.02 1.28 16 46 H 0.10 1.11 8.12 -2.39 -0.02 1.09 16 47 H 0.09 1.08 7.77 -2.39 -0.02 1.06 16 48 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 50 H -0.01 -0.60 8.07 -2.39 -0.02 -0.62 16 51 H 0.04 2.30 6.91 -2.39 -0.02 2.28 16 52 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -70.42 396.14 3.62 -66.80 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.19 Total: 23.66 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.33 Total: -5.68 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -3.88 Total: -110.85 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.42 3.62 -66.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087837388.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.091 kcal (2) G-P(sol) polarization free energy of solvation -70.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds