Wall clock time and date at job start Tue Mar 31 2020 12:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47161 * 2 1 4 4 C 1.50707 * 109.46874 * 119.99780 * 2 1 3 5 5 O 1.21284 * 119.99705 * 351.01414 * 4 2 1 6 6 N 1.34774 * 120.00304 * 171.01959 * 4 2 1 7 7 C 1.46924 * 120.62612 * 5.38992 * 6 4 2 8 8 C 1.53201 * 108.89220 * 233.67109 * 7 6 4 9 9 C 1.53036 * 109.31253 * 305.29973 * 8 7 6 10 10 C 1.53002 * 109.45874 * 181.37092 * 9 8 7 11 11 H 1.09002 * 112.77842 * 316.98579 * 10 9 8 12 12 N 1.47299 * 113.52106 * 186.07670 * 10 9 8 13 13 C 1.36934 * 135.89316 * 91.36257 * 12 10 9 14 14 H 1.08004 * 119.99926 * 359.97438 * 13 12 10 15 15 C 1.38807 * 120.00285 * 179.97438 * 13 12 10 16 16 N 1.31623 * 120.00090 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00163 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47336 * 59.99900 * 17 15 13 19 19 H 1.48506 * 109.47133 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47141 * 299.99649 * 17 15 13 21 21 C 1.47300 * 88.21948 * 271.37979 * 12 10 9 22 22 C 1.52338 * 113.52501 * 87.90358 * 10 9 8 23 23 C 1.52621 * 122.03496 * 324.73468 * 22 10 9 24 24 C 1.54007 * 86.67699 * 207.82582 * 23 22 10 25 25 C 1.52629 * 122.03278 * 214.13226 * 22 10 9 26 26 C 1.53043 * 109.54084 * 61.36008 * 9 8 7 27 27 C 1.47201 * 120.81459 * 185.52682 * 6 4 2 28 28 H 1.08991 * 109.47548 * 300.00779 * 1 2 3 29 29 H 1.09009 * 109.46533 * 60.00294 * 1 2 3 30 30 H 1.08996 * 109.47237 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47841 * 239.99394 * 2 1 3 32 32 H 1.08998 * 109.47496 * 67.32080 * 3 2 1 33 33 H 1.09006 * 109.46834 * 187.31808 * 3 2 1 34 34 H 1.08998 * 109.47045 * 307.31678 * 3 2 1 35 35 H 1.09001 * 109.58855 * 113.81796 * 7 6 4 36 36 H 1.08993 * 109.59258 * 353.53234 * 7 6 4 37 37 H 1.09001 * 109.49016 * 65.24850 * 8 7 6 38 38 H 1.08990 * 109.49997 * 185.30974 * 8 7 6 39 39 H 1.09004 * 109.45971 * 301.34194 * 9 8 7 40 40 H 0.97002 * 120.00625 * 180.02562 * 16 15 13 41 41 H 1.09001 * 113.52312 * 88.61394 * 21 12 10 42 42 H 1.08997 * 113.52213 * 219.16571 * 21 12 10 43 43 H 1.09000 * 113.68146 * 322.26912 * 23 22 10 44 44 H 1.09004 * 113.68178 * 93.38109 * 23 22 10 45 45 H 1.09004 * 113.56874 * 269.87981 * 24 23 22 46 46 H 1.09003 * 113.56928 * 139.12372 * 24 23 22 47 47 H 1.08999 * 113.67843 * 266.62064 * 25 22 10 48 48 H 1.09000 * 113.67739 * 37.63800 * 25 22 10 49 49 H 1.08994 * 109.49457 * 58.58844 * 26 9 8 50 50 H 1.08996 * 109.49675 * 178.65114 * 26 9 8 51 51 H 1.09002 * 109.53717 * 6.53835 * 27 6 4 52 52 H 1.09001 * 109.67745 * 246.23372 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.2562 -1.0270 2.1072 6 7 3.3438 -0.9938 1.3570 7 6 4.3125 -0.5141 0.3619 8 6 5.1238 -1.7063 -0.1554 9 6 5.7554 -2.4409 1.0293 10 6 6.5944 -3.6121 0.5142 11 1 6.0982 -4.1694 -0.2803 12 7 7.1301 -4.4680 1.5866 13 6 6.7152 -5.5946 2.2452 14 1 5.7703 -6.0517 1.9908 15 6 7.5090 -6.1492 3.2397 16 7 8.6608 -5.5925 3.5494 17 14 6.9434 -7.6865 4.1375 18 1 6.7655 -8.7921 3.1623 19 1 7.9626 -8.0742 5.1457 20 1 5.6522 -7.4149 4.8190 21 6 8.3066 -3.5833 1.6422 22 6 8.0319 -3.2312 0.1834 23 6 8.3939 -1.8701 -0.4045 24 6 9.6019 -2.5715 -1.0529 25 6 8.7981 -3.8822 -0.9649 26 6 4.6534 -2.9696 1.9503 27 6 3.8369 -1.7918 2.4914 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.7876 1.9172 0.9482 33 1 3.1222 1.4452 -0.1309 34 1 1.5737 1.9927 -0.8173 35 1 4.9826 0.2108 0.8241 36 1 3.7829 -0.0452 -0.4673 37 1 4.4660 -2.3865 -0.6964 38 1 5.9080 -1.3503 -0.8234 39 1 6.3937 -1.7534 1.5844 40 1 9.2158 -5.9802 4.2441 41 1 8.1856 -2.7408 2.3232 42 1 9.2451 -4.1166 1.7929 43 1 7.6660 -1.4967 -1.1249 44 1 8.6690 -1.1284 0.3454 45 1 10.4958 -2.5658 -0.4290 46 1 9.7969 -2.2477 -2.0753 47 1 9.3948 -4.7422 -0.6610 48 1 8.1844 -4.0810 -1.8435 49 1 4.0002 -3.6379 1.3894 50 1 5.1033 -3.5132 2.7810 51 1 2.9914 -2.1675 3.0677 52 1 4.4675 -1.1724 3.1293 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093359462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:29 Heat of formation + Delta-G solvation = 32.087068 kcal Electronic energy + Delta-G solvation = -29063.396648 eV Core-core repulsion = 25450.964032 eV Total energy + Delta-G solvation = -3612.432615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.54585 -39.79752 -37.14011 -35.14577 -34.71140 -32.67142 -31.45765 -30.81770 -27.36612 -27.32707 -26.26164 -25.23525 -24.00385 -23.26670 -22.87234 -22.25137 -20.64002 -19.67843 -18.72017 -17.39560 -17.07141 -16.55077 -15.83799 -15.41231 -15.05239 -14.94516 -14.36890 -14.20287 -14.15003 -14.02750 -13.76332 -13.42951 -13.08760 -12.79903 -12.75286 -12.43371 -12.37287 -12.07510 -12.04990 -11.85175 -11.74153 -11.29692 -11.22624 -11.19064 -11.07683 -10.95528 -10.89010 -10.63448 -10.52313 -10.39565 -10.24163 -10.16800 -9.77562 -9.57790 -9.42023 -9.37041 -8.91539 -8.73735 -8.44836 -6.82587 -5.75010 -3.05675 2.69456 3.08469 3.40568 3.45551 3.45760 4.38474 4.44498 4.67607 4.79468 4.84728 4.93498 5.02969 5.09359 5.16646 5.19199 5.26333 5.32835 5.38993 5.41307 5.45711 5.53720 5.57723 5.64136 5.66004 5.70955 5.73938 5.81850 5.90391 5.97250 6.00978 6.04139 6.07526 6.08482 6.16486 6.21536 6.28977 6.30854 6.34813 6.43113 6.53795 6.60541 6.71443 6.87490 6.94504 7.00336 7.11006 7.26593 7.37628 7.52093 7.59994 8.00512 8.25663 9.06467 9.73209 10.68455 11.42240 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.004206 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.353265 B = 6655.081071 C = 8442.371536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C -0.150 4.150 4 C 0.516 3.484 5 O -0.548 6.548 6 N -0.607 5.607 7 C 0.102 3.898 8 C -0.130 4.130 9 C -0.088 4.088 10 C 0.160 3.840 11 H 0.045 0.955 12 N -0.595 5.595 13 C -0.212 4.212 14 H 0.078 0.922 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.907 3.093 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.182 3.818 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.138 4.138 25 C -0.106 4.106 26 C -0.118 4.118 27 C 0.112 3.888 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.253 0.747 41 H 0.024 0.976 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.055 0.945 50 H 0.095 0.905 51 H 0.085 0.915 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 14.057 -11.317 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 C -0.207 4.207 4 C 0.304 3.696 5 O -0.425 6.425 6 N -0.340 5.340 7 C -0.021 4.021 8 C -0.168 4.168 9 C -0.109 4.109 10 C 0.052 3.948 11 H 0.063 0.937 12 N -0.317 5.317 13 C -0.339 4.339 14 H 0.096 0.904 15 C -0.202 4.202 16 N -0.566 5.566 17 Si 0.737 3.263 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.056 3.944 22 C -0.125 4.125 23 C -0.166 4.166 24 C -0.176 4.176 25 C -0.144 4.144 26 C -0.156 4.156 27 C -0.010 4.010 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.114 0.886 51 H 0.103 0.897 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.878 13.549 -10.552 18.499 hybrid contribution -0.202 -0.856 0.642 1.089 sum -7.080 12.693 -9.910 17.591 Atomic orbital electron populations 1.21602 0.92656 1.02678 1.01964 1.21290 0.98153 0.97322 0.96925 1.21966 1.01768 0.94163 1.02845 1.20651 0.81690 0.79025 0.88216 1.90670 1.55241 1.54071 1.42547 1.48239 1.06472 1.53071 1.26211 1.21969 0.91590 0.96880 0.91620 1.22050 0.99172 0.96850 0.98771 1.21442 0.96301 0.97915 0.95290 1.21744 0.92072 0.89933 0.91054 0.93718 1.45607 1.19566 1.25037 1.41506 1.18812 1.02905 0.99030 1.13192 0.90439 1.24728 0.97033 0.99223 0.99237 1.69815 1.11958 1.41099 1.33717 0.86282 0.77549 0.83023 0.79427 1.21191 1.21644 1.21203 1.21734 0.93605 0.91374 0.87692 1.22952 0.97409 0.94478 0.97637 1.22714 0.97482 0.96876 0.99520 1.22810 0.97463 0.97551 0.99741 1.22398 0.97914 0.96867 0.97214 1.21801 0.96457 0.96231 1.01110 1.21756 0.98712 0.92772 0.87753 0.91848 0.92214 0.92192 0.88805 0.92123 0.91390 0.91474 0.91423 0.89626 0.91946 0.90533 0.91390 0.93711 0.95810 0.91387 0.90652 0.92030 0.90566 0.92525 0.91440 0.91071 0.92624 0.88645 0.89657 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.53 37.16 0.32 -0.97 16 2 C -0.12 -1.15 2.41 -91.77 -0.22 -1.38 16 3 C -0.15 -1.18 8.78 37.16 0.33 -0.85 16 4 C 0.52 7.29 7.00 -10.98 -0.08 7.21 16 5 O -0.55 -9.84 15.44 5.55 0.09 -9.76 16 6 N -0.61 -8.21 2.98 -172.54 -0.51 -8.72 16 7 C 0.10 1.09 5.32 -3.71 -0.02 1.07 16 8 C -0.13 -1.57 5.28 -26.61 -0.14 -1.71 16 9 C -0.09 -1.40 1.54 -90.58 -0.14 -1.54 16 10 C 0.16 3.01 3.63 -71.49 -0.26 2.76 16 11 H 0.04 0.87 8.12 -51.93 -0.42 0.45 16 12 N -0.60 -14.20 3.00 -176.26 -0.53 -14.73 16 13 C -0.21 -5.68 9.94 -15.06 -0.15 -5.83 16 14 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 15 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 16 N -0.92 -26.68 11.51 55.49 0.64 -26.04 16 17 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.18 4.06 6.81 -7.49 -0.05 4.01 16 22 C -0.12 -2.16 1.07 -155.49 -0.17 -2.33 16 23 C -0.13 -1.75 6.91 -26.40 -0.18 -1.93 16 24 C -0.14 -1.88 8.08 -25.70 -0.21 -2.09 16 25 C -0.11 -1.73 7.90 -26.39 -0.21 -1.93 16 26 C -0.12 -2.05 5.16 -26.61 -0.14 -2.18 16 27 C 0.11 1.74 6.43 -3.56 -0.02 1.72 16 28 H 0.06 0.68 8.00 -51.93 -0.42 0.27 16 29 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.81 7.47 -51.93 -0.39 0.42 16 32 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.07 0.48 5.53 -51.93 -0.29 0.19 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.70 4.36 -51.93 -0.23 0.48 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.82 5.67 -51.93 -0.29 0.52 16 39 H 0.07 1.14 7.15 -51.93 -0.37 0.77 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.02 0.55 7.56 -51.93 -0.39 0.16 16 42 H 0.07 1.74 7.17 -51.93 -0.37 1.37 16 43 H 0.08 0.89 6.09 -51.93 -0.32 0.58 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.10 2.00 6.97 -51.93 -0.36 1.63 16 51 H 0.09 1.45 7.06 -51.93 -0.37 1.08 16 52 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -30.88 387.23 -10.20 -41.08 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -9.25 Total: 1.54 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.44 Total: -6.22 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.41 Total: -49.49 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.88 -10.20 -41.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093359462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.169 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds