Wall clock time and date at job start Tue Mar 31 2020 12:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47274 * 2 1 4 4 H 1.08998 * 109.47553 * 54.99736 * 3 2 1 5 5 C 1.53002 * 109.47436 * 175.00027 * 3 2 1 6 6 C 1.52995 * 109.47005 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47485 * 299.99477 * 6 5 3 8 8 H 1.08998 * 109.47055 * 300.00801 * 7 6 5 9 9 C 1.50691 * 109.47347 * 180.02562 * 7 6 5 10 10 O 1.21279 * 120.00224 * 359.97438 * 9 7 6 11 11 N 1.34787 * 119.99961 * 180.02562 * 9 7 6 12 12 C 1.46496 * 119.99646 * 179.97438 * 11 9 7 13 13 H 1.08999 * 110.56306 * 32.10599 * 12 11 9 14 14 C 1.54857 * 110.62899 * 269.02802 * 12 11 9 15 15 C 1.55848 * 103.44608 * 241.51389 * 14 12 11 16 16 H 1.08999 * 116.12654 * 159.14605 * 15 14 12 17 17 C 1.55846 * 105.06377 * 288.17649 * 15 14 12 18 18 C 1.54847 * 103.44762 * 71.82319 * 17 15 14 19 19 C 1.55849 * 110.62270 * 155.00259 * 12 11 9 20 20 H 1.08995 * 115.56031 * 319.67825 * 19 12 11 21 21 N 1.50236 * 101.04823 * 32.93812 * 15 14 12 22 22 C 1.36934 * 130.83974 * 126.05852 * 21 15 14 23 23 H 1.08005 * 120.00048 * 351.56419 * 22 21 15 24 24 C 1.38812 * 120.00331 * 171.56913 * 22 21 15 25 25 N 1.31622 * 120.00214 * 157.94308 * 24 22 21 26 26 Si 1.86800 * 119.99930 * 337.93998 * 24 22 21 27 27 H 1.48504 * 109.46926 * 93.13285 * 26 24 22 28 28 H 1.48497 * 109.47145 * 213.13187 * 26 24 22 29 29 H 1.48496 * 109.46959 * 333.13715 * 26 24 22 30 30 C 1.53008 * 109.46876 * 60.00207 * 7 6 5 31 31 C 1.52995 * 109.46895 * 300.00155 * 30 7 6 32 32 H 1.09001 * 109.47319 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47127 * 300.00544 * 1 2 3 34 34 H 1.08997 * 109.46871 * 60.00496 * 1 2 3 35 35 H 1.09001 * 109.47517 * 239.99807 * 2 1 3 36 36 H 1.09008 * 109.47167 * 119.99921 * 2 1 3 37 37 H 1.08998 * 109.46987 * 59.99363 * 5 3 2 38 38 H 1.08998 * 109.46950 * 300.00038 * 5 3 2 39 39 H 1.09001 * 109.47523 * 60.00447 * 6 5 3 40 40 H 1.09007 * 109.46741 * 179.97438 * 6 5 3 41 41 H 0.96997 * 119.99420 * 0.02562 * 11 9 7 42 42 H 1.08999 * 110.62668 * 0.02562 * 14 12 11 43 43 H 1.08993 * 110.62833 * 123.02577 * 14 12 11 44 44 H 1.09001 * 110.62275 * 190.31619 * 17 15 14 45 45 H 1.09002 * 110.62588 * 313.17291 * 17 15 14 46 46 H 1.08998 * 110.62816 * 241.51286 * 18 17 15 47 47 H 1.09004 * 110.62912 * 118.48892 * 18 17 15 48 48 H 0.97001 * 119.99898 * 180.02562 * 25 24 22 49 49 H 1.08998 * 109.46793 * 60.00434 * 30 7 6 50 50 H 1.08998 * 109.47071 * 180.02562 * 30 7 6 51 51 H 1.09004 * 109.47144 * 180.02562 * 31 30 7 52 52 H 1.08998 * 109.47628 * 299.99768 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5649 1.4444 0.1257 6 6 4.0748 2.8868 0.1251 7 6 3.6702 3.5703 -1.1826 8 1 4.1048 3.0308 -2.0241 9 6 4.1731 4.9908 -1.1835 10 8 4.7936 5.4151 -0.2317 11 7 3.9323 5.7903 -2.2416 12 6 4.4207 7.1715 -2.2421 13 1 5.3564 7.2469 -1.6882 14 6 3.3548 8.1273 -1.6520 15 6 3.0385 9.0918 -2.8347 16 1 2.0860 9.6191 -2.7824 17 6 4.3010 9.9955 -2.9691 18 6 5.3669 9.0398 -3.5591 19 6 4.6033 7.6886 -3.7010 20 1 5.0243 6.9709 -4.4051 21 7 3.2153 8.1733 -4.0104 22 6 2.3715 7.8714 -5.0457 23 1 1.3494 8.2200 -5.0286 24 6 2.8296 7.1172 -6.1172 25 7 1.9748 6.4636 -6.8753 26 14 4.6593 7.0298 -6.4834 27 1 5.2437 5.8447 -5.8058 28 1 4.8657 6.9137 -7.9494 29 1 5.3229 8.2616 -5.9861 30 6 2.1453 3.5685 -1.3084 31 6 1.6354 2.1260 -1.3077 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.9995 0.9053 -0.7160 38 1 3.8532 0.9571 1.0571 39 1 3.6403 3.4263 0.9667 40 1 5.1612 2.8881 0.2151 41 1 3.4351 5.4513 -3.0023 42 1 2.4629 7.5736 -1.3586 43 1 3.7611 8.6793 -0.8046 44 1 4.1090 10.8243 -3.6505 45 1 4.6130 10.3669 -1.9930 46 1 6.2092 8.9348 -2.8753 47 1 5.7036 9.3945 -4.5333 48 1 2.2950 5.9363 -7.6238 49 1 1.7107 4.1079 -0.4669 50 1 1.8570 4.0550 -2.2402 51 1 0.5490 2.1246 -1.3978 52 1 2.0699 1.5865 -2.1492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098251214.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:18 Heat of formation + Delta-G solvation = -21.118949 kcal Electronic energy + Delta-G solvation = -28830.404442 eV Core-core repulsion = 25215.664640 eV Total energy + Delta-G solvation = -3614.739801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.28286 -39.31579 -37.84747 -33.97434 -33.78278 -32.61931 -30.84334 -29.70612 -29.62832 -29.15859 -27.97337 -24.50837 -23.98056 -22.65885 -22.02003 -20.90451 -20.26191 -19.96603 -19.43287 -18.95780 -17.09911 -17.00733 -16.25255 -15.59966 -15.07803 -14.77823 -14.60966 -14.11765 -13.98543 -13.86958 -13.60763 -13.52608 -13.27600 -13.08882 -12.83166 -12.61043 -12.29954 -12.11475 -11.88385 -11.70194 -11.51979 -11.46122 -11.25102 -11.14542 -11.10582 -11.05719 -10.89419 -10.84631 -10.55350 -10.40100 -10.30386 -10.26558 -9.97101 -9.87173 -9.67604 -9.32484 -9.20262 -8.94085 -8.50050 -7.30527 -5.99034 -3.24031 3.00237 3.22771 3.41012 3.43384 3.63207 4.46090 4.54874 4.59508 4.61573 4.69720 4.96803 4.98691 5.08562 5.14585 5.25627 5.32662 5.36432 5.38684 5.41051 5.44995 5.49645 5.54236 5.60913 5.61809 5.68383 5.79508 5.80376 5.82718 5.84838 5.91777 5.93571 5.96544 6.03969 6.05428 6.13219 6.14755 6.19191 6.21124 6.23257 6.27179 6.36076 6.42204 6.46128 6.49275 6.66921 6.75411 6.85736 7.07539 7.31866 8.02606 8.24421 8.64832 8.65744 9.58136 10.18803 11.17144 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.014468 B = 0.003895 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.859913 B = 7187.628344 C = 8100.116294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.069 0.931 5 C -0.114 4.114 6 C -0.095 4.095 7 C -0.107 4.107 8 H 0.093 0.907 9 C 0.514 3.486 10 O -0.556 6.556 11 N -0.708 5.708 12 C 0.131 3.869 13 H 0.084 0.916 14 C -0.135 4.135 15 C 0.140 3.860 16 H 0.096 0.904 17 C -0.133 4.133 18 C -0.134 4.134 19 C 0.115 3.885 20 H 0.094 0.906 21 N -0.605 5.605 22 C -0.223 4.223 23 H 0.098 0.902 24 C 0.017 3.983 25 N -0.911 5.911 26 Si 0.866 3.134 27 H -0.291 1.291 28 H -0.304 1.304 29 H -0.260 1.260 30 C -0.111 4.111 31 C -0.113 4.113 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.408 0.592 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.068 0.932 48 H 0.262 0.738 49 H 0.066 0.934 50 H 0.074 0.926 51 H 0.068 0.932 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 -7.885 13.035 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.088 0.912 5 C -0.151 4.151 6 C -0.133 4.133 7 C -0.128 4.128 8 H 0.111 0.889 9 C 0.301 3.699 10 O -0.435 6.435 11 N -0.358 5.358 12 C 0.025 3.975 13 H 0.102 0.898 14 C -0.175 4.175 15 C 0.033 3.967 16 H 0.114 0.886 17 C -0.172 4.172 18 C -0.174 4.174 19 C 0.007 3.993 20 H 0.112 0.888 21 N -0.328 5.328 22 C -0.350 4.350 23 H 0.116 0.884 24 C -0.181 4.181 25 N -0.556 5.556 26 Si 0.698 3.302 27 H -0.220 1.220 28 H -0.233 1.233 29 H -0.186 1.186 30 C -0.149 4.149 31 C -0.150 4.150 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.243 0.757 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.086 0.914 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.775 -7.703 13.372 15.534 hybrid contribution 0.859 -0.232 -0.911 1.273 sum 2.633 -7.935 12.461 15.006 Atomic orbital electron populations 1.21830 0.95995 1.01316 1.02076 1.21567 0.95856 0.96502 1.01737 1.21233 0.95527 0.95656 0.98376 0.91207 1.21611 0.95183 0.96617 1.01705 1.21299 1.01137 0.94688 0.96218 1.21344 0.97547 0.93263 1.00641 0.88885 1.20633 0.79304 0.87615 0.82389 1.90631 1.41726 1.76359 1.34778 1.46078 1.56538 1.12745 1.20405 1.22477 0.96696 0.80340 0.98030 0.89788 1.23330 0.98681 0.97976 0.97561 1.22964 0.96141 0.90385 0.87186 0.88639 1.22991 0.96915 0.97931 0.99384 1.23048 0.97175 0.96482 1.00676 1.23382 0.88030 0.94957 0.92903 0.88847 1.46910 1.12863 1.47960 1.25071 1.18659 0.92141 1.28671 0.95487 0.88435 1.24692 0.96853 0.98884 0.97666 1.69825 1.33432 1.31751 1.20583 0.87194 0.88151 0.78420 0.76406 1.21956 1.23275 1.18572 1.21527 0.92845 0.97492 1.03034 1.21621 1.00943 0.95106 0.97329 0.93103 0.92876 0.92258 0.92056 0.92280 0.92000 0.91950 0.91364 0.91504 0.75692 0.91679 0.91906 0.92183 0.92370 0.92306 0.91366 0.92806 0.91555 0.90733 0.91374 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.67 37.16 0.36 -0.89 16 2 C -0.12 -1.00 5.40 -26.73 -0.14 -1.14 16 3 C -0.09 -0.85 2.19 -90.61 -0.20 -1.05 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.11 -1.11 5.20 -26.73 -0.14 -1.25 16 6 C -0.10 -1.16 4.49 -26.74 -0.12 -1.28 16 7 C -0.11 -1.42 2.52 -91.77 -0.23 -1.66 16 8 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 9 C 0.51 8.66 7.16 -10.98 -0.08 8.58 16 10 O -0.56 -10.83 15.63 5.56 0.09 -10.74 16 11 N -0.71 -12.57 4.97 -51.40 -0.26 -12.83 16 12 C 0.13 2.40 2.80 -65.43 -0.18 2.22 16 13 H 0.08 1.54 7.23 -51.93 -0.38 1.17 16 14 C -0.14 -2.33 6.23 -24.23 -0.15 -2.48 16 15 C 0.14 2.57 5.48 -62.80 -0.34 2.23 16 16 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 17 C -0.13 -2.20 6.44 -24.24 -0.16 -2.35 16 18 C -0.13 -2.40 6.21 -24.24 -0.15 -2.56 16 19 C 0.11 2.33 3.16 -62.79 -0.20 2.13 16 20 H 0.09 2.07 3.47 -51.93 -0.18 1.89 16 21 N -0.61 -13.42 2.85 -145.81 -0.42 -13.84 16 22 C -0.22 -5.88 10.94 -15.06 -0.16 -6.05 16 23 H 0.10 2.75 8.06 -52.48 -0.42 2.33 16 24 C 0.02 0.46 5.49 -17.43 -0.10 0.36 16 25 N -0.91 -26.78 13.97 55.49 0.78 -26.01 16 26 Si 0.87 21.20 24.62 -169.99 -4.19 17.01 16 27 H -0.29 -6.97 6.76 56.52 0.38 -6.59 16 28 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 29 H -0.26 -6.08 4.83 56.52 0.27 -5.81 16 30 C -0.11 -1.39 5.10 -26.73 -0.14 -1.53 16 31 C -0.11 -1.19 4.96 -26.73 -0.13 -1.32 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 40 H 0.07 0.86 8.10 -51.92 -0.42 0.44 16 41 H 0.41 7.53 8.08 -40.82 -0.33 7.20 16 42 H 0.06 1.17 7.98 -51.93 -0.41 0.75 16 43 H 0.06 0.98 7.82 -51.93 -0.41 0.58 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.82 7.82 -51.93 -0.41 0.42 16 46 H 0.06 0.92 7.82 -51.93 -0.41 0.51 16 47 H 0.07 1.30 6.58 -51.93 -0.34 0.96 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.07 1.02 7.56 -51.93 -0.39 0.63 16 51 H 0.07 0.69 6.57 -51.93 -0.34 0.35 16 52 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -29.54 381.93 -10.06 -39.60 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -9.55 Total: 9.08 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.27 Total: -8.03 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.10 Total: -52.67 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.19 Total: 17.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.54 -10.06 -39.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098251214.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.482 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds