Wall clock time and date at job start Tue Mar 31 2020 12:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32991 * 119.99966 * 2 1 4 4 C 1.47109 * 119.99960 * 3.78581 * 3 2 1 5 5 O 1.21613 * 119.99863 * 353.84411 * 4 3 2 6 6 N 1.34778 * 119.99973 * 173.84948 * 4 3 2 7 7 C 1.46495 * 120.00052 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47358 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.70032 * 300.38706 * 8 7 6 10 10 C 1.53193 * 109.58763 * 180.02562 * 8 7 6 11 11 C 1.53040 * 109.31279 * 185.58019 * 10 8 7 12 12 C 1.53037 * 109.54053 * 61.36386 * 11 10 8 13 13 C 1.53001 * 109.49654 * 58.58472 * 12 11 10 14 14 C 1.53001 * 109.50095 * 178.65217 * 12 11 10 15 15 C 1.53197 * 109.31362 * 298.64113 * 12 11 10 16 16 N 1.46916 * 108.77780 * 54.62874 * 15 12 11 17 17 C 1.36947 * 120.62934 * 126.39528 * 16 15 12 18 18 H 1.07998 * 119.99525 * 214.30233 * 17 16 15 19 19 C 1.38809 * 120.00172 * 34.30095 * 17 16 15 20 20 N 1.31622 * 119.99571 * 7.63565 * 19 17 16 21 21 Si 1.86792 * 120.00086 * 187.63729 * 19 17 16 22 22 H 1.48502 * 109.47221 * 60.00213 * 21 19 17 23 23 H 1.48499 * 109.47058 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47291 * 300.00099 * 21 19 17 25 25 C 1.50696 * 119.99991 * 179.97438 * 2 1 3 26 26 C 1.53007 * 117.49984 * 15.15476 * 25 2 1 27 27 C 1.53001 * 117.50079 * 306.49520 * 25 2 1 28 28 H 1.09000 * 109.47123 * 63.73129 * 1 2 3 29 29 H 1.09005 * 109.47021 * 183.73679 * 1 2 3 30 30 H 1.09004 * 109.47018 * 303.72723 * 1 2 3 31 31 H 1.07991 * 120.00091 * 183.79446 * 3 2 1 32 32 H 0.96999 * 119.99764 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.47050 * 59.99266 * 7 6 4 34 34 H 1.09002 * 109.47177 * 299.99850 * 7 6 4 35 35 H 1.09000 * 109.49537 * 305.52965 * 10 8 7 36 36 H 1.08995 * 109.49350 * 65.59920 * 10 8 7 37 37 H 1.08996 * 109.46183 * 181.38798 * 11 10 8 38 38 H 1.09005 * 109.46220 * 301.36163 * 11 10 8 39 39 H 1.09006 * 109.46977 * 60.00141 * 13 12 11 40 40 H 1.09002 * 109.47325 * 179.97438 * 13 12 11 41 41 H 1.08997 * 109.47490 * 300.00440 * 13 12 11 42 42 H 1.09001 * 109.47102 * 60.00161 * 14 12 11 43 43 H 1.09004 * 109.47165 * 180.02562 * 14 12 11 44 44 H 1.08996 * 109.46759 * 299.99946 * 14 12 11 45 45 H 1.09007 * 109.58851 * 174.42124 * 15 12 11 46 46 H 1.08999 * 109.58143 * 294.69723 * 15 12 11 47 47 H 0.97002 * 119.99801 * 179.97438 * 20 19 17 48 48 H 1.08999 * 115.55275 * 160.82446 * 25 2 1 49 49 H 1.08996 * 117.49602 * 359.97438 * 26 25 2 50 50 H 1.09002 * 117.49567 * 145.02089 * 26 25 2 51 51 H 1.09004 * 117.49787 * 214.97690 * 27 25 2 52 52 H 1.08995 * 117.50001 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4388 2.4243 0.0841 5 8 0.2235 2.4299 0.0408 6 7 2.1141 3.5841 0.2091 7 6 1.3840 4.8513 0.2935 8 6 2.3792 6.0053 0.4300 9 1 2.9803 5.8676 1.3287 10 6 1.6184 7.3319 0.5191 11 6 2.6186 8.4902 0.5151 12 6 3.4131 8.4760 -0.7928 13 6 2.4506 8.5927 -1.9763 14 6 4.3892 9.6541 -0.8103 15 6 4.1942 7.1623 -0.8968 16 7 3.2562 6.0413 -0.7483 17 6 3.2004 5.0488 -1.6903 18 1 2.2574 4.5755 -1.9206 19 6 4.3557 4.6512 -2.3490 20 7 5.5253 5.1179 -1.9659 21 14 4.2506 3.4541 -3.7789 22 1 3.4084 4.0388 -4.8532 23 1 5.6138 3.1923 -4.3066 24 1 3.6460 2.1798 -3.3143 25 6 2.2605 -1.3051 0.0006 26 6 1.4793 -2.5721 -0.3537 27 6 1.9148 -2.3200 1.0920 28 1 -0.3633 0.4548 -0.9215 29 1 -0.3633 -1.0255 0.0670 30 1 -0.3633 0.5706 0.8547 31 1 3.2501 1.1528 -0.0619 32 1 3.0834 3.5795 0.2440 33 1 0.7262 4.8345 1.1624 34 1 0.7893 4.9889 -0.6097 35 1 0.9496 7.4258 -0.3365 36 1 1.0364 7.3563 1.4403 37 1 2.0811 9.4344 0.6032 38 1 3.3029 8.3821 1.3566 39 1 1.8929 9.5262 -1.9004 40 1 3.0169 8.5830 -2.9076 41 1 1.7561 7.7527 -1.9641 42 1 5.0755 9.5699 0.0324 43 1 4.9545 9.6437 -1.7422 44 1 3.8326 10.5881 -0.7337 45 1 4.6828 7.1036 -1.8695 46 1 4.9451 7.1202 -0.1077 47 1 6.3328 4.8398 -2.4259 48 1 3.3000 -1.2480 -0.3224 49 1 0.4203 -2.4616 -0.5867 50 1 2.0050 -3.3486 -0.9094 51 1 2.7267 -2.9308 1.4867 52 1 1.1426 -2.0436 1.8099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098940201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:21 Heat of formation + Delta-G solvation = 0.205342 kcal Electronic energy + Delta-G solvation = -28672.918653 eV Core-core repulsion = 25059.103543 eV Total energy + Delta-G solvation = -3613.815111 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.93752 -40.05567 -38.79206 -36.61484 -34.98421 -34.03860 -33.62996 -31.73419 -29.55385 -28.14686 -28.01211 -27.31403 -25.56754 -24.27045 -23.66178 -23.23372 -21.71282 -21.21822 -19.54940 -19.39152 -18.31175 -17.67293 -17.27538 -17.05227 -16.17850 -16.11365 -15.76365 -15.50215 -15.35276 -15.19369 -14.75927 -14.64808 -14.33672 -14.17435 -13.89676 -13.71981 -13.64233 -13.05872 -13.00754 -12.92627 -12.80451 -12.72269 -12.50985 -12.49346 -12.45396 -12.24309 -12.17288 -12.09785 -11.86475 -11.85656 -11.60227 -11.36616 -11.24996 -10.98163 -10.88828 -10.52129 -10.42213 -10.03882 -9.55207 -8.44499 -7.79126 -5.29807 0.40973 1.41194 1.44450 1.48993 2.36519 2.49353 2.56257 3.01829 3.36141 3.59245 3.65554 3.87292 3.93509 4.01876 4.05232 4.14240 4.18325 4.21089 4.33360 4.34595 4.45429 4.54146 4.66056 4.70247 4.76467 4.80722 4.84136 4.88059 4.94469 4.96826 4.98143 5.06568 5.10491 5.11340 5.12798 5.14204 5.17094 5.25013 5.26659 5.41162 5.50279 5.55245 5.56045 5.57899 5.61816 5.72237 5.77668 5.83334 5.91779 6.50516 6.82838 7.24907 7.44321 7.92350 8.46882 9.24128 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.003863 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.080529 B = 7245.697541 C = 8365.328965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.002 4.002 3 C -0.242 4.242 4 C 0.534 3.466 5 O -0.589 6.589 6 N -0.693 5.693 7 C 0.143 3.857 8 C 0.161 3.839 9 H 0.028 0.972 10 C -0.124 4.124 11 C -0.091 4.091 12 C -0.093 4.093 13 C -0.117 4.117 14 C -0.128 4.128 15 C 0.197 3.803 16 N -0.595 5.595 17 C -0.225 4.225 18 H 0.054 0.946 19 C -0.029 4.029 20 N -0.925 5.925 21 Si 0.933 3.067 22 H -0.291 1.291 23 H -0.295 1.295 24 H -0.279 1.279 25 C -0.156 4.156 26 C -0.165 4.165 27 C -0.151 4.151 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.408 0.592 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.049 0.951 46 H -0.007 1.007 47 H 0.247 0.753 48 H 0.114 0.886 49 H 0.105 0.895 50 H 0.114 0.886 51 H 0.117 0.883 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 -5.009 6.828 10.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.004 4.004 3 C -0.263 4.263 4 C 0.324 3.676 5 O -0.474 6.474 6 N -0.341 5.341 7 C 0.019 3.981 8 C 0.055 3.945 9 H 0.045 0.955 10 C -0.163 4.163 11 C -0.128 4.128 12 C -0.095 4.095 13 C -0.174 4.174 14 C -0.186 4.186 15 C 0.072 3.928 16 N -0.319 5.319 17 C -0.356 4.356 18 H 0.072 0.928 19 C -0.225 4.225 20 N -0.571 5.571 21 Si 0.764 3.236 22 H -0.218 1.218 23 H -0.221 1.221 24 H -0.205 1.205 25 C -0.174 4.174 26 C -0.201 4.201 27 C -0.188 4.188 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.245 0.755 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.011 0.989 47 H 0.056 0.944 48 H 0.132 0.868 49 H 0.123 0.877 50 H 0.132 0.868 51 H 0.135 0.865 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.545 -5.013 6.739 10.648 hybrid contribution 1.096 -0.425 -1.263 1.725 sum -5.449 -5.438 5.476 9.447 Atomic orbital electron populations 1.20951 0.90708 1.01910 1.02822 1.21991 0.96285 0.92959 0.89152 1.22359 1.00468 0.91858 1.11584 1.18800 0.87069 0.85185 0.76504 1.90669 1.14698 1.88180 1.53827 1.45924 1.11076 1.05459 1.71674 1.21185 0.94064 0.82814 1.00026 1.20865 0.90749 0.93154 0.89753 0.95459 1.21948 0.98002 0.94562 1.01823 1.21386 0.97267 0.98013 0.96170 1.21172 0.96345 0.96266 0.95709 1.21615 0.98616 1.00584 0.96570 1.21701 0.98603 0.97316 1.00942 1.20577 0.89429 0.84210 0.98610 1.44144 1.43282 1.23242 1.21222 1.19013 0.91591 1.11470 1.13546 0.92803 1.25530 0.95372 0.99981 1.01626 1.70071 0.97149 1.47525 1.42390 0.85869 0.75874 0.80657 0.81221 1.21842 1.22116 1.20463 1.21301 0.99807 0.87940 1.08322 1.23217 1.01214 0.97078 0.98615 1.23083 1.04080 0.99790 0.91813 0.92056 0.90253 0.91168 0.85673 0.75521 0.91350 0.93911 0.92207 0.90360 0.90815 0.92828 0.92173 0.95256 0.93637 0.93092 0.93998 0.91297 0.93258 0.98911 0.94379 0.86792 0.87682 0.86774 0.86519 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.06 8.04 71.24 0.57 -2.49 16 2 C 0.00 -0.05 5.83 -17.62 -0.10 -0.16 16 3 C -0.24 -8.38 9.67 23.43 0.23 -8.15 16 4 C 0.53 21.28 7.72 86.57 0.67 21.95 16 5 O -0.59 -25.31 13.11 -4.07 -0.05 -25.36 16 6 N -0.69 -27.74 3.92 -466.72 -1.83 -29.57 16 7 C 0.14 5.48 4.43 86.38 0.38 5.87 16 8 C 0.16 6.11 3.00 44.97 0.14 6.24 16 9 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 10 C -0.12 -3.88 5.03 30.67 0.15 -3.73 16 11 C -0.09 -2.72 4.71 30.62 0.14 -2.58 16 12 C -0.09 -3.25 0.77 -52.10 -0.04 -3.29 16 13 C -0.12 -4.06 7.98 71.98 0.57 -3.49 16 14 C -0.13 -3.83 8.48 71.98 0.61 -3.22 16 15 C 0.20 8.87 3.91 86.37 0.34 9.21 16 16 N -0.60 -26.97 2.40 -675.23 -1.62 -28.59 16 17 C -0.23 -11.36 6.88 84.03 0.58 -10.79 16 18 H 0.05 2.86 6.01 -2.91 -0.02 2.84 16 19 C -0.03 -1.52 5.10 84.86 0.43 -1.09 16 20 N -0.93 -51.42 11.10 21.65 0.24 -51.18 16 21 Si 0.93 44.56 29.56 68.60 2.03 46.58 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 25 C -0.16 -3.50 6.00 -11.54 -0.07 -3.57 16 26 C -0.16 -2.78 9.79 30.62 0.30 -2.49 16 27 C -0.15 -2.51 10.07 30.62 0.31 -2.20 16 28 H 0.06 1.99 7.51 -2.39 -0.02 1.98 16 29 H 0.08 1.70 5.71 -2.38 -0.01 1.68 16 30 H 0.07 2.20 6.91 -2.39 -0.02 2.19 16 31 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 32 H 0.41 17.23 7.42 -92.71 -0.69 16.54 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.04 1.82 7.38 -2.39 -0.02 1.80 16 35 H 0.06 1.97 6.34 -2.39 -0.02 1.95 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.04 1.75 5.97 -2.39 -0.01 1.74 16 42 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.05 2.58 6.24 -2.38 -0.01 2.57 16 46 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 47 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 48 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 49 H 0.10 1.71 6.25 -2.39 -0.01 1.70 16 50 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 52 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -60.57 393.08 4.18 -56.39 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: 0.20 Total: 35.68 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 5.21 Total: -3.95 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -3.21 Total: -109.34 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.57 4.18 -56.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098940201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.594 kcal (2) G-P(sol) polarization free energy of solvation -60.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds