Wall clock time and date at job start Tue Mar 31 2020 12:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47178 * 2 1 4 4 C 1.52999 * 109.47340 * 240.00118 * 2 1 3 5 5 N 1.46498 * 109.47365 * 59.99724 * 4 2 1 6 6 C 1.36936 * 120.00127 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00110 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99985 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99994 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00241 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46612 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46930 * 119.99963 * 10 8 6 13 13 H 1.48503 * 109.47043 * 239.99888 * 10 8 6 14 14 C 1.52998 * 109.47285 * 119.99769 * 2 1 3 15 15 C 1.53034 * 109.46214 * 300.00256 * 14 2 1 16 16 C 1.53193 * 109.31568 * 181.37105 * 15 14 2 17 17 N 1.46924 * 108.77582 * 305.36462 * 16 15 14 18 18 C 1.34775 * 120.63137 * 233.58679 * 17 16 15 19 19 O 1.21610 * 119.99948 * 8.31520 * 18 17 16 20 20 C 1.47104 * 119.99620 * 188.31234 * 18 17 16 21 21 C 1.32614 * 124.61778 * 188.50259 * 20 18 17 22 22 C 1.51108 * 110.75962 * 179.73513 * 21 20 18 23 23 C 1.54574 * 104.83985 * 16.59717 * 22 21 20 24 24 C 1.51111 * 124.62447 * 8.19803 * 20 18 17 25 25 C 1.46932 * 118.73537 * 53.85524 * 17 16 15 26 26 C 1.53041 * 109.44750 * 60.06598 * 14 2 1 27 27 H 1.08998 * 109.47130 * 299.99992 * 1 2 3 28 28 H 1.09004 * 109.47082 * 60.00149 * 1 2 3 29 29 H 1.09003 * 109.46946 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47727 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46993 * 299.99906 * 3 2 1 32 32 H 1.08999 * 109.46988 * 59.99432 * 3 2 1 33 33 H 1.09003 * 109.47537 * 179.97438 * 4 2 1 34 34 H 1.09002 * 109.47144 * 299.99344 * 4 2 1 35 35 H 0.97003 * 119.99736 * 0.02562 * 5 4 2 36 36 H 0.97001 * 119.99933 * 180.02562 * 9 8 6 37 37 H 1.09008 * 109.46122 * 180.02562 * 14 2 1 38 38 H 1.09007 * 109.50080 * 61.41754 * 15 14 2 39 39 H 1.09004 * 109.52458 * 301.33908 * 15 14 2 40 40 H 1.08999 * 109.58517 * 185.57640 * 16 15 14 41 41 H 1.08999 * 109.58487 * 65.15446 * 16 15 14 42 42 H 1.08012 * 124.62070 * 359.73038 * 21 20 18 43 43 H 1.09003 * 110.36570 * 135.43918 * 22 21 20 44 44 H 1.09004 * 110.36474 * 257.74983 * 22 21 20 45 45 H 1.08997 * 110.98654 * 93.07596 * 23 22 21 46 46 H 1.09006 * 110.98279 * 216.87306 * 23 22 21 47 47 H 1.08996 * 110.36466 * 282.50686 * 24 20 18 48 48 H 1.08999 * 110.36229 * 44.82842 * 24 20 18 49 49 H 1.09002 * 109.58092 * 65.93379 * 25 17 16 50 50 H 1.09000 * 109.58713 * 186.34917 * 25 17 16 51 51 H 1.09000 * 109.49511 * 298.57138 * 26 14 2 52 52 H 1.08996 * 109.50081 * 58.63898 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0307 -2.4454 6 6 1.8821 -0.4988 -3.6891 7 1 2.5031 -1.3768 -3.7882 8 6 1.4199 0.1558 -4.8225 9 7 0.6643 1.2268 -4.7018 10 14 1.8712 -0.4823 -6.5192 11 1 2.7250 -1.6896 -6.3829 12 1 0.6337 -0.8318 -7.2619 13 1 2.6142 0.5676 -7.2615 14 6 2.0400 -0.7212 1.2492 15 6 1.5298 0.0004 2.4986 16 6 2.0703 -0.7041 3.7469 17 7 1.7081 -2.1265 3.6814 18 6 1.0553 -2.7165 4.7022 19 8 0.6271 -2.0435 5.6202 20 6 0.8605 -4.1746 4.7059 21 6 0.0999 -4.8310 5.5715 22 6 0.1198 -6.3144 5.2846 23 6 1.3458 -6.5238 4.3669 24 6 1.4947 -5.1280 3.7198 25 6 2.0765 -2.8948 2.4844 26 6 1.5310 -2.1645 1.2479 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1301 -0.7208 -1.2495 34 1 1.6768 -1.7489 -1.2492 35 1 0.9943 0.7582 -2.3564 36 1 0.3410 1.6841 -5.4938 37 1 3.1301 -0.7207 1.2493 38 1 0.4400 -0.0213 2.5118 39 1 1.8728 1.0350 2.4874 40 1 1.6314 -0.2559 4.6383 41 1 3.1552 -0.6044 3.7817 42 1 -0.4578 -4.3682 6.3724 43 1 0.2379 -6.8782 6.2101 44 1 -0.7940 -6.6138 4.7713 45 1 2.2304 -6.7803 4.9497 46 1 1.1434 -7.2842 3.6125 47 1 0.9676 -5.0937 2.7664 48 1 2.5481 -4.8847 3.5809 49 1 3.1619 -2.9703 2.4184 50 1 1.6417 -3.8926 2.5426 51 1 0.4413 -2.1658 1.2729 52 1 1.8749 -2.6708 0.3461 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101529593.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:16 Heat of formation + Delta-G solvation = -1.379345 kcal Electronic energy + Delta-G solvation = -28236.835469 eV Core-core repulsion = 24622.951641 eV Total energy + Delta-G solvation = -3613.883828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.80759 -39.07653 -37.89964 -36.19012 -33.77389 -31.86644 -31.25799 -30.07007 -29.49918 -28.66957 -26.85228 -25.93936 -25.30975 -23.36102 -22.71541 -21.73590 -21.35402 -20.05339 -18.65668 -17.96289 -17.15812 -16.84652 -16.29646 -16.04962 -15.18769 -14.83543 -14.73343 -14.49903 -14.05830 -13.91627 -13.76253 -13.72537 -13.13945 -12.92998 -12.83541 -12.74448 -12.55237 -12.40567 -12.31028 -11.97101 -11.78381 -11.64815 -11.58976 -11.41443 -11.36715 -10.98188 -10.88144 -10.79891 -10.73271 -10.60235 -10.15847 -10.11184 -10.05663 -9.80679 -9.59430 -9.49761 -9.28319 -8.83830 -8.63402 -6.85983 -5.74275 -3.01411 1.14137 2.90174 3.11501 3.43794 3.49304 3.51618 4.08825 4.18039 4.49794 4.59731 4.60499 4.75689 4.83967 4.85978 4.96497 5.06584 5.17383 5.23192 5.25774 5.31947 5.39245 5.39759 5.48210 5.52873 5.55094 5.59318 5.65581 5.67931 5.72903 5.77157 5.86594 5.91275 5.97966 6.03494 6.08901 6.13135 6.16817 6.22501 6.26375 6.37799 6.41064 6.45500 6.50672 6.64090 6.75440 6.79639 6.99495 7.01808 7.32643 7.72359 8.06644 8.45631 9.56609 10.17017 10.51247 11.48951 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.018181 B = 0.002799 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.678703 B =10001.245642 C =11054.458824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.137 4.137 4 C 0.163 3.837 5 N -0.730 5.730 6 C -0.235 4.235 7 H 0.069 0.931 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.292 1.292 14 C -0.071 4.071 15 C -0.131 4.131 16 C 0.111 3.889 17 N -0.601 5.601 18 C 0.566 3.434 19 O -0.550 6.550 20 C -0.193 4.193 21 C -0.075 4.075 22 C -0.108 4.108 23 C -0.127 4.127 24 C -0.095 4.095 25 C 0.065 3.935 26 C -0.134 4.134 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.015 0.985 34 H 0.019 0.981 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.137 0.863 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.119 0.881 51 H 0.070 0.930 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 -12.687 20.962 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.195 4.195 4 C 0.036 3.964 5 N -0.375 5.375 6 C -0.366 4.366 7 H 0.087 0.913 8 C -0.212 4.212 9 N -0.583 5.583 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.220 1.220 13 H -0.220 1.220 14 C -0.090 4.090 15 C -0.169 4.169 16 C -0.011 4.011 17 N -0.333 5.333 18 C 0.356 3.644 19 O -0.430 6.430 20 C -0.196 4.196 21 C -0.094 4.094 22 C -0.145 4.145 23 C -0.165 4.165 24 C -0.131 4.131 25 C -0.057 4.057 26 C -0.172 4.172 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.155 0.845 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.110 0.890 48 H 0.100 0.900 49 H 0.084 0.916 50 H 0.137 0.863 51 H 0.089 0.911 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.761 -12.418 21.290 24.710 hybrid contribution 0.106 0.120 -1.148 1.159 sum 1.867 -12.298 20.142 23.674 Atomic orbital electron populations 1.21884 0.94773 1.01439 1.01382 1.20688 0.95824 0.95644 0.94355 1.21849 1.00485 0.95621 1.01515 1.20723 0.95686 0.94287 0.85747 1.42447 1.61313 1.33375 1.00327 1.19275 1.25228 1.08403 0.83718 0.91312 1.24718 1.00705 0.98017 0.97722 1.69667 1.39640 1.20916 1.28124 0.86143 0.77484 0.77836 0.84903 1.20629 1.21961 1.21966 1.21091 0.99856 0.94116 0.93981 1.22078 1.01688 0.99543 0.93578 1.21656 0.99534 0.80175 0.99744 1.47952 1.56860 1.10874 1.17617 1.18013 0.77491 0.87107 0.81772 1.90764 1.50114 1.65231 1.36844 1.21821 1.04004 0.92982 1.00760 1.24046 0.94017 0.95483 0.95903 1.21491 0.99354 0.93200 1.00414 1.22523 0.98144 0.96898 0.98910 1.21630 1.01263 0.92855 0.97375 1.23075 1.00512 0.97878 0.84185 1.22198 1.01622 0.96153 0.97263 0.93659 0.91696 0.93048 0.93231 0.91562 0.93529 0.96765 0.96283 0.78056 0.93646 0.91291 0.91162 0.90397 0.89320 0.91676 0.84533 0.90252 0.89539 0.90781 0.90301 0.89021 0.89995 0.91554 0.86336 0.91140 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.60 37.16 0.28 -1.93 16 2 C -0.06 -1.01 0.33 -154.51 -0.05 -1.06 16 3 C -0.14 -2.18 7.95 37.16 0.30 -1.88 16 4 C 0.16 3.18 4.80 -4.04 -0.02 3.17 16 5 N -0.73 -18.13 5.00 -59.91 -0.30 -18.43 16 6 C -0.23 -6.53 9.99 -15.06 -0.15 -6.68 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 9 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 10 Si 0.90 22.41 29.55 -169.99 -5.02 17.39 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 C -0.07 -0.89 1.51 -90.58 -0.14 -1.03 16 15 C -0.13 -1.53 4.65 -26.61 -0.12 -1.65 16 16 C 0.11 1.26 6.44 -3.71 -0.02 1.24 16 17 N -0.60 -6.92 2.97 -173.90 -0.52 -7.43 16 18 C 0.57 7.34 7.64 -12.66 -0.10 7.24 16 19 O -0.55 -8.97 16.22 5.27 0.09 -8.89 16 20 C -0.19 -1.92 5.94 -102.73 -0.61 -2.53 16 21 C -0.07 -0.65 10.44 -36.01 -0.38 -1.03 16 22 C -0.11 -0.64 6.80 -26.86 -0.18 -0.82 16 23 C -0.13 -0.71 7.16 -25.08 -0.18 -0.89 16 24 C -0.09 -0.67 4.38 -26.85 -0.12 -0.79 16 25 C 0.07 0.63 5.20 -3.49 -0.02 0.61 16 26 C -0.13 -1.55 4.66 -26.39 -0.12 -1.67 16 27 H 0.04 0.65 6.46 -51.93 -0.34 0.31 16 28 H 0.06 1.22 6.86 -51.93 -0.36 0.87 16 29 H 0.05 0.81 6.46 -51.93 -0.34 0.47 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.24 6.86 -51.93 -0.36 0.88 16 32 H 0.05 0.63 6.40 -51.93 -0.33 0.30 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.02 0.38 6.40 -51.93 -0.33 0.05 16 35 H 0.38 10.04 5.36 -40.82 -0.22 9.82 16 36 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 38 H 0.07 0.90 6.51 -51.93 -0.34 0.56 16 39 H 0.08 0.87 6.36 -51.93 -0.33 0.53 16 40 H 0.09 1.11 7.00 -51.93 -0.36 0.74 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.14 1.22 8.04 -52.48 -0.42 0.80 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.60 6.68 -51.93 -0.35 0.25 16 48 H 0.08 0.55 6.90 -51.93 -0.36 0.19 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.12 0.96 2.47 -70.03 -0.17 0.79 16 51 H 0.07 0.88 6.51 -51.93 -0.34 0.54 16 52 H 0.08 0.99 6.36 -51.93 -0.33 0.66 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -32.62 380.16 -9.65 -42.27 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -8.62 Total: 7.14 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.73 Total: -10.26 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.09 Total: -53.37 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.62 -9.65 -42.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101529593.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.886 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds