Wall clock time and date at job start Tue Mar 31 2020 12:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47448 * 2 1 4 4 C 1.52999 * 109.47448 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47062 * 180.02562 * 4 3 2 6 6 C 1.36934 * 119.99801 * 269.72285 * 5 4 3 7 7 H 1.08004 * 120.00302 * 324.03354 * 6 5 4 8 8 C 1.38812 * 120.00062 * 144.02574 * 6 5 4 9 9 N 1.31624 * 120.00025 * 158.16215 * 8 6 5 10 10 Si 1.86793 * 120.00221 * 338.16438 * 8 6 5 11 11 H 1.48505 * 109.47351 * 95.50269 * 10 8 6 12 12 H 1.48503 * 109.47469 * 215.50328 * 10 8 6 13 13 H 1.48500 * 109.47378 * 335.50584 * 10 8 6 14 14 C 1.46499 * 120.00210 * 89.99568 * 5 4 3 15 15 C 1.50704 * 109.46802 * 84.79057 * 14 5 4 16 16 C 1.38264 * 119.94571 * 272.14082 * 15 14 5 17 17 C 1.38145 * 120.05805 * 179.72739 * 16 15 14 18 18 C 1.38730 * 119.94199 * 0.56424 * 17 16 15 19 19 O 1.35902 * 120.05518 * 179.68258 * 18 17 16 20 20 C 1.42898 * 116.99722 * 0.02562 * 19 18 17 21 21 C 1.53005 * 109.46785 * 180.02562 * 20 19 18 22 22 N 1.46896 * 109.47220 * 65.21861 * 21 20 19 23 23 C 1.46898 * 111.00274 * 74.33978 * 22 21 20 24 24 C 1.46909 * 110.99799 * 198.29234 * 22 21 20 25 25 C 1.38734 * 119.88888 * 359.71190 * 18 17 16 26 26 C 1.38146 * 119.94426 * 359.97438 * 25 18 17 27 27 H 1.08998 * 109.46930 * 300.00149 * 1 2 3 28 28 H 1.08999 * 109.46754 * 60.00266 * 1 2 3 29 29 H 1.09002 * 109.46734 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47797 * 240.00014 * 2 1 3 31 31 H 1.09003 * 109.47391 * 120.00083 * 2 1 3 32 32 H 1.09007 * 109.46901 * 59.99976 * 3 2 1 33 33 H 1.09003 * 109.46893 * 300.00388 * 3 2 1 34 34 H 1.08998 * 109.46930 * 59.99851 * 4 3 2 35 35 H 1.08999 * 109.46754 * 299.99734 * 4 3 2 36 36 H 0.97001 * 120.00276 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.47313 * 204.78395 * 14 5 4 38 38 H 1.08995 * 109.47361 * 324.79124 * 14 5 4 39 39 H 1.08006 * 119.96985 * 359.97342 * 16 15 14 40 40 H 1.07997 * 120.02938 * 180.25026 * 17 16 15 41 41 H 1.08999 * 109.47541 * 299.99532 * 20 19 18 42 42 H 1.08998 * 109.47560 * 60.00112 * 20 19 18 43 43 H 1.09001 * 109.47325 * 185.21931 * 21 20 19 44 44 H 1.09003 * 109.46866 * 305.21521 * 21 20 19 45 45 H 1.08997 * 109.47219 * 59.99522 * 23 22 21 46 46 H 1.09000 * 109.47040 * 179.97438 * 23 22 21 47 47 H 1.09000 * 109.46538 * 300.00044 * 23 22 21 48 48 H 1.09000 * 109.47175 * 64.31185 * 24 22 21 49 49 H 1.08998 * 109.46665 * 184.31290 * 24 22 21 50 50 H 1.08993 * 109.46973 * 304.31128 * 24 22 21 51 51 H 1.08000 * 120.02855 * 179.97438 * 25 18 17 52 52 H 1.07998 * 119.97280 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2915 3.4680 -1.1856 7 1 4.6844 2.9205 -2.0297 8 6 4.0227 4.8248 -1.3028 9 7 4.6165 5.5349 -2.2386 10 14 2.8184 5.6429 -0.1325 11 1 3.5642 6.2601 0.9936 12 1 2.0590 6.6929 -0.8578 13 1 1.8746 4.6261 0.3972 14 6 4.3030 3.5136 1.2690 15 6 5.6838 3.1731 1.7678 16 6 5.8762 2.0537 2.5561 17 6 7.1418 1.7363 3.0100 18 6 8.2183 2.5483 2.6838 19 8 9.4632 2.2418 3.1344 20 6 9.5910 1.0679 3.9391 21 6 11.0539 0.8879 4.3497 22 7 11.4576 1.9980 5.2229 23 6 10.8808 1.8483 6.5656 24 6 12.9208 2.1112 5.2881 25 6 8.0216 3.6742 1.8973 26 6 6.7551 3.9837 1.4406 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8935 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 4.4290 6.4831 -2.3203 37 1 4.2267 4.5904 1.1178 38 1 3.5629 3.1965 2.0036 39 1 5.0370 1.4247 2.8141 40 1 7.2922 0.8595 3.6223 41 1 8.9736 1.1701 4.8315 42 1 9.2639 0.1987 3.3685 43 1 11.1678 -0.0550 4.8846 44 1 11.6827 0.8787 3.4593 45 1 11.2257 0.9132 7.0070 46 1 11.1960 2.6832 7.1916 47 1 9.7932 1.8371 6.4946 48 1 13.3098 2.3670 4.3025 49 1 13.1935 2.8905 5.9998 50 1 13.3448 1.1603 5.6104 51 1 8.8580 4.3082 1.6424 52 1 6.6016 4.8598 0.8281 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138772925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:57 Heat of formation + Delta-G solvation = 6.980590 kcal Electronic energy + Delta-G solvation = -27163.710229 eV Core-core repulsion = 23550.188915 eV Total energy + Delta-G solvation = -3613.521314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.80187 -38.10599 -37.09849 -35.98018 -34.04314 -31.69606 -30.95365 -30.39511 -29.65233 -28.00129 -27.86685 -25.35246 -24.54521 -24.03474 -22.33289 -21.45922 -21.00748 -20.60506 -19.82877 -17.91600 -16.85078 -16.44600 -15.94650 -15.36450 -15.28498 -14.92178 -14.80265 -14.69300 -14.40227 -14.25524 -13.82365 -13.49917 -13.05909 -12.97426 -12.80842 -12.75715 -12.59426 -12.47165 -12.29224 -12.06283 -12.00273 -11.97327 -11.65702 -11.51970 -11.26365 -11.00611 -10.78552 -10.67932 -10.58692 -10.46540 -10.36742 -10.22788 -9.85284 -9.81168 -9.49253 -8.61597 -8.52594 -8.42725 -7.54339 -6.84025 -5.96998 -3.35776 1.91014 2.00274 3.32027 3.40641 3.48645 3.53256 3.64713 4.29893 4.53805 4.69613 4.77221 4.92517 5.04816 5.11353 5.12168 5.15637 5.25026 5.27216 5.31313 5.33992 5.35954 5.37229 5.53947 5.54415 5.56989 5.61316 5.65277 5.74611 5.88133 5.91176 5.99074 6.12201 6.17938 6.23705 6.29057 6.31482 6.32934 6.47821 6.54272 6.61375 6.67972 6.70042 6.73104 6.79705 6.91814 6.94391 7.10979 7.34506 7.39479 7.85163 8.06869 8.40759 9.00014 9.73208 10.13800 11.18523 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.014163 B = 0.002940 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.480485 B = 9520.620458 C =10835.715300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.153 3.847 5 N -0.597 5.597 6 C -0.260 4.260 7 H 0.078 0.922 8 C 0.035 3.965 9 N -0.899 5.899 10 Si 0.871 3.129 11 H -0.285 1.285 12 H -0.302 1.302 13 H -0.266 1.266 14 C 0.171 3.829 15 C -0.113 4.113 16 C -0.081 4.081 17 C -0.215 4.215 18 C 0.112 3.888 19 O -0.303 6.303 20 C 0.068 3.932 21 C 0.055 3.945 22 N -0.540 5.540 23 C 0.021 3.979 24 C 0.026 3.974 25 C -0.151 4.151 26 C -0.056 4.056 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.024 0.976 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.023 0.977 51 H 0.123 0.877 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 -10.808 15.451 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.027 3.973 5 N -0.317 5.317 6 C -0.389 4.389 7 H 0.096 0.904 8 C -0.165 4.165 9 N -0.540 5.540 10 Si 0.701 3.299 11 H -0.213 1.213 12 H -0.231 1.231 13 H -0.191 1.191 14 C 0.046 3.954 15 C -0.116 4.116 16 C -0.099 4.099 17 C -0.234 4.234 18 C 0.067 3.933 19 O -0.217 6.217 20 C -0.009 4.009 21 C -0.073 4.073 22 N -0.264 5.264 23 C -0.127 4.127 24 C -0.122 4.122 25 C -0.170 4.170 26 C -0.075 4.075 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.042 0.958 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.042 0.958 51 H 0.141 0.859 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.141 -10.116 15.094 19.910 hybrid contribution -0.485 -0.366 1.000 1.171 sum 7.655 -10.482 16.095 20.676 Atomic orbital electron populations 1.21769 0.96733 1.00595 1.01640 1.21500 0.95118 0.98190 1.01191 1.22224 0.99205 0.94647 1.01937 1.20887 0.91072 0.86317 0.99056 1.44136 1.74520 1.11578 1.01514 1.18791 1.37418 0.92523 0.90151 0.90399 1.25410 0.97895 0.96762 0.96440 1.69872 1.41638 1.07065 1.35468 0.87032 0.83440 0.78995 0.80415 1.21320 1.23058 1.19066 1.20207 0.89863 0.97424 0.87955 1.20810 0.98647 0.95382 0.96763 1.20738 0.95765 0.96487 0.96959 1.21019 0.93469 1.01730 1.07208 1.18910 0.83443 0.95085 0.95878 1.86113 1.26528 1.43744 1.65338 1.22686 0.96636 0.87349 0.94188 1.22201 0.95578 0.91971 0.97544 1.61891 1.09853 1.43621 1.11065 1.22467 1.00728 1.00071 0.89436 1.22391 0.87008 1.00054 1.02774 1.20383 0.97961 0.97170 1.01474 1.20978 0.90944 0.99368 0.96208 0.93193 0.92861 0.93530 0.92362 0.92813 0.93240 0.91691 0.93187 0.94444 0.92746 0.91797 0.93769 0.86782 0.86709 0.92380 0.91992 0.92715 0.89624 0.95781 0.91227 0.91235 0.91082 0.91347 0.95849 0.85949 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.74 5.93 -26.73 -0.16 -1.90 16 3 C -0.14 -2.52 5.54 -26.73 -0.15 -2.67 16 4 C 0.15 3.00 5.69 -4.04 -0.02 2.98 16 5 N -0.60 -13.90 2.09 -174.61 -0.37 -14.27 16 6 C -0.26 -7.13 9.93 -15.06 -0.15 -7.28 16 7 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 8 C 0.04 0.99 5.29 -17.43 -0.09 0.90 16 9 N -0.90 -27.04 13.97 55.49 0.78 -26.27 16 10 Si 0.87 21.87 24.94 -169.99 -4.24 17.64 16 11 H -0.29 -6.97 6.68 56.52 0.38 -6.59 16 12 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.17 3.71 4.44 -5.19 -0.02 3.69 16 15 C -0.11 -2.26 5.46 -104.60 -0.57 -2.83 16 16 C -0.08 -1.39 9.33 -39.61 -0.37 -1.76 16 17 C -0.22 -3.41 9.04 -39.43 -0.36 -3.77 16 18 C 0.11 1.89 6.69 -39.22 -0.26 1.63 16 19 O -0.30 -4.65 10.09 -19.43 -0.20 -4.85 16 20 C 0.07 0.76 4.92 37.16 0.18 0.94 16 21 C 0.06 0.51 5.37 -3.82 -0.02 0.49 16 22 N -0.54 -5.44 4.91 -251.26 -1.23 -6.67 16 23 C 0.02 0.18 9.39 60.06 0.56 0.74 16 24 C 0.03 0.21 9.53 60.07 0.57 0.78 16 25 C -0.15 -2.78 9.99 -39.43 -0.39 -3.17 16 26 C -0.06 -1.14 9.68 -39.60 -0.38 -1.52 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 35 H 0.04 0.66 7.28 -51.93 -0.38 0.29 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.06 1.52 3.23 -51.93 -0.17 1.35 16 38 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 39 H 0.11 1.75 7.65 -52.48 -0.40 1.35 16 40 H 0.11 1.49 6.30 -52.49 -0.33 1.16 16 41 H 0.06 0.62 6.22 -51.93 -0.32 0.29 16 42 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 43 H 0.05 0.40 7.99 -51.93 -0.41 -0.01 16 44 H 0.09 0.80 7.96 -51.93 -0.41 0.39 16 45 H 0.02 0.17 8.09 -51.93 -0.42 -0.25 16 46 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 47 H 0.07 0.60 6.72 -51.93 -0.35 0.26 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.49 8.05 -51.93 -0.42 0.07 16 50 H 0.02 0.16 8.13 -51.93 -0.42 -0.26 16 51 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 52 H 0.13 2.81 8.06 -52.49 -0.42 2.39 16 LS Contribution 410.11 15.07 6.18 6.18 Total: -1.00 -30.85 410.11 -9.84 -40.69 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -9.50 Total: 1.84 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -1.26 Total: -14.30 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.82 Total: -47.20 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.20 Total: -4.85 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.24 Total: 17.64 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.85 -9.84 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138772925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.676 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds