Wall clock time and date at job start Tue Mar 31 2020 12:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 H 1.08998 * 110.01678 * 53.23121 * 3 2 1 5 5 C 1.54261 * 110.03147 * 291.78936 * 3 2 1 6 6 C 1.54896 * 104.19735 * 217.10744 * 5 3 2 7 7 C 1.54892 * 102.74659 * 37.93962 * 6 5 3 8 8 C 1.53879 * 110.03201 * 174.62066 * 3 2 1 9 9 H 1.08999 * 110.03228 * 238.61843 * 8 3 2 10 10 C 1.50696 * 110.03492 * 0.02562 * 8 3 2 11 11 O 1.21279 * 120.00535 * 86.56694 * 10 8 3 12 12 N 1.34777 * 119.99687 * 266.57328 * 10 8 3 13 13 C 1.46499 * 119.99891 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47361 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.47536 * 180.02562 * 14 13 12 16 16 C 1.29456 * 117.69969 * 94.99426 * 15 14 13 17 17 C 1.50319 * 123.65170 * 180.86014 * 16 15 14 18 18 N 1.47004 * 109.16894 * 349.02434 * 17 16 15 19 19 C 1.36938 * 121.37283 * 222.92667 * 18 17 16 20 20 H 1.07999 * 119.99803 * 154.50749 * 19 18 17 21 21 C 1.38808 * 120.00160 * 334.50851 * 19 18 17 22 22 N 1.31615 * 120.00069 * 348.50776 * 21 19 18 23 23 Si 1.86805 * 120.00046 * 168.51649 * 21 19 18 24 24 H 1.48499 * 109.47453 * 94.97546 * 23 21 19 25 25 H 1.48493 * 109.47009 * 214.97769 * 23 21 19 26 26 H 1.48500 * 109.46822 * 334.97455 * 23 21 19 27 27 C 1.47334 * 117.24890 * 42.94817 * 18 17 16 28 28 C 1.49974 * 117.68953 * 274.73777 * 15 14 13 29 29 H 1.08998 * 109.47201 * 60.00368 * 1 2 3 30 30 H 1.08998 * 109.47074 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47234 * 300.00308 * 1 2 3 32 32 H 1.08994 * 109.47413 * 239.99467 * 2 1 3 33 33 H 1.09004 * 109.47224 * 120.00071 * 2 1 3 34 34 H 1.09000 * 110.48630 * 335.77864 * 5 3 2 35 35 H 1.08994 * 110.48809 * 98.42860 * 5 3 2 36 36 H 1.08998 * 110.75613 * 156.25569 * 6 5 3 37 37 H 1.08998 * 110.75235 * 279.44499 * 6 5 3 38 38 H 1.08998 * 110.48401 * 203.38135 * 7 6 5 39 39 H 1.09001 * 110.48265 * 80.73962 * 7 6 5 40 40 H 0.96997 * 120.00067 * 359.97438 * 12 10 8 41 41 H 1.08997 * 109.47560 * 59.99612 * 13 12 10 42 42 H 1.08997 * 109.46960 * 299.99405 * 13 12 10 43 43 H 1.09001 * 109.47387 * 59.99229 * 14 13 12 44 44 H 1.08997 * 109.46754 * 299.99723 * 14 13 12 45 45 H 1.08000 * 118.16525 * 0.88594 * 16 15 14 46 46 H 1.08995 * 109.52167 * 108.93330 * 17 16 15 47 47 H 1.09005 * 109.51716 * 229.11522 * 17 16 15 48 48 H 0.97004 * 120.00100 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.77870 * 57.80905 * 27 18 17 50 50 H 1.08999 * 109.77999 * 178.56805 * 27 18 17 51 51 H 1.08998 * 109.31160 * 281.28471 * 28 15 14 52 52 H 1.08997 * 109.31784 * 40.71446 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5863 1.9986 0.8204 5 6 1.7089 2.1200 -1.3457 6 6 2.9391 3.0165 -1.6326 7 6 4.1195 2.1470 -1.1327 8 6 3.5727 1.4597 0.1355 9 1 3.8628 2.0241 1.0217 10 6 4.0988 0.0504 0.2258 11 8 4.3445 -0.5712 -0.7861 12 7 4.2961 -0.5192 1.4313 13 6 4.8082 -1.8890 1.5191 14 6 4.9399 -2.2909 2.9895 15 6 5.4671 -3.6997 3.0799 16 6 6.7435 -3.8561 3.2295 17 6 7.4137 -5.1989 3.3160 18 7 6.3884 -6.2411 3.4693 19 6 6.5471 -7.2721 4.3565 20 1 5.6808 -7.7734 4.7623 21 6 7.8212 -7.6729 4.7342 22 7 8.8725 -7.2257 4.0808 23 14 8.0438 -8.8472 6.1699 24 1 8.1412 -10.2387 5.6608 25 1 9.2868 -8.5007 6.9046 26 1 6.8801 -8.7355 7.0857 27 6 5.1834 -6.1309 2.6288 28 6 4.4755 -4.8217 2.9962 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.5905 1.3725 -2.1302 35 1 0.8076 2.7264 -1.2561 36 1 3.0312 3.2160 -2.7002 37 1 2.8771 3.9485 -1.0708 38 1 4.9773 2.7732 -0.8875 39 1 4.3903 1.4039 -1.8828 40 1 4.0999 -0.0219 2.2406 41 1 5.7852 -1.9432 1.0391 42 1 4.1185 -2.5675 1.0171 43 1 3.9630 -2.2366 3.4700 44 1 5.6297 -1.6124 3.4912 45 1 7.3610 -2.9726 3.2962 46 1 7.9843 -5.3805 2.4052 47 1 8.0832 -5.2170 4.1760 48 1 9.7629 -7.5061 4.3445 49 1 5.4676 -6.1182 1.5766 50 1 4.5207 -6.9744 2.8217 51 1 3.9772 -4.9349 3.9590 52 1 3.7320 -4.5897 2.2337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161126098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:05 Heat of formation + Delta-G solvation = -48.064033 kcal Electronic energy + Delta-G solvation = -27297.047641 eV Core-core repulsion = 23681.139413 eV Total energy + Delta-G solvation = -3615.908228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.48706 -39.56755 -38.47944 -36.67930 -35.11059 -34.03780 -33.18135 -31.54131 -30.92760 -29.54106 -28.46728 -27.05311 -24.78993 -24.15102 -23.69469 -22.60246 -22.39050 -21.45633 -20.15683 -19.46437 -17.93141 -17.52537 -17.20603 -17.00287 -16.68695 -16.24098 -15.81167 -15.55016 -15.47693 -15.31708 -15.15900 -14.86225 -14.52413 -14.30759 -14.12489 -13.88313 -13.45421 -13.36557 -13.20740 -12.99754 -12.85301 -12.77725 -12.60415 -12.46199 -12.36086 -12.19490 -12.17302 -11.90344 -11.87393 -11.77282 -11.69346 -11.49465 -11.46073 -11.34002 -11.22406 -10.71350 -10.69146 -10.05610 -9.49253 -8.73950 -7.88373 -5.33566 1.41363 1.46004 1.46770 1.57114 1.68284 2.27510 2.49852 3.28891 3.50707 3.64155 3.65451 3.72649 3.95297 4.02381 4.12736 4.18117 4.23214 4.28711 4.38694 4.43320 4.54041 4.54718 4.57973 4.62810 4.67734 4.69146 4.78755 4.80278 4.84822 4.90402 4.90962 4.96888 5.05007 5.09518 5.15059 5.16844 5.19287 5.22706 5.24611 5.27844 5.38306 5.41058 5.43514 5.49220 5.50752 5.56246 5.59530 5.87209 6.27971 6.33881 6.61773 7.12657 7.32158 7.81809 8.37358 9.19998 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.030514 B = 0.002174 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.399919 B =12876.048154 C =13366.259846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.072 4.072 4 H 0.106 0.894 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.108 4.108 9 H 0.120 0.880 10 C 0.519 3.481 11 O -0.588 6.588 12 N -0.719 5.719 13 C 0.134 3.866 14 C -0.077 4.077 15 C -0.121 4.121 16 C -0.175 4.175 17 C 0.207 3.793 18 N -0.616 5.616 19 C -0.257 4.257 20 H 0.071 0.929 21 C -0.058 4.058 22 N -0.943 5.943 23 Si 0.974 3.026 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.267 1.267 27 C 0.135 3.865 28 C -0.086 4.086 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.416 0.584 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.000 1.000 47 H 0.057 0.943 48 H 0.250 0.750 49 H 0.016 0.984 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.779 24.662 -5.556 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C -0.090 4.090 4 H 0.124 0.876 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.129 4.129 9 H 0.138 0.862 10 C 0.308 3.692 11 O -0.468 6.468 12 N -0.371 5.371 13 C 0.010 3.990 14 C -0.115 4.115 15 C -0.122 4.122 16 C -0.195 4.195 17 C 0.082 3.918 18 N -0.340 5.340 19 C -0.387 4.387 20 H 0.089 0.911 21 C -0.253 4.253 22 N -0.590 5.590 23 Si 0.802 3.198 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.192 1.192 27 C 0.010 3.990 28 C -0.125 4.125 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.253 0.747 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.130 0.870 46 H 0.018 0.982 47 H 0.076 0.924 48 H 0.059 0.941 49 H 0.034 0.966 50 H 0.078 0.922 51 H 0.088 0.912 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.455 24.153 -6.215 29.879 hybrid contribution 0.945 -1.174 0.707 1.665 sum -15.510 22.978 -5.508 28.265 Atomic orbital electron populations 1.21728 0.94336 1.01607 1.02617 1.21799 0.97359 0.96506 1.01080 1.21775 0.91378 0.96018 0.99858 0.87583 1.22458 0.98844 0.98391 0.95883 1.22479 0.93337 0.98252 1.01445 1.22375 0.99030 0.98544 0.95668 1.22161 0.97378 0.91229 1.02129 0.86188 1.21078 0.75827 0.89642 0.82688 1.90683 1.53193 1.65967 1.36924 1.46042 1.66609 1.15554 1.08886 1.21098 0.98294 0.82789 0.96851 1.20793 1.03032 0.92933 0.94713 1.20589 0.94314 0.95611 1.01673 1.22843 0.96687 0.98509 1.01423 1.19358 0.90069 0.84383 0.97990 1.44418 1.19193 1.26038 1.44364 1.19551 0.92089 1.09727 1.17334 0.91100 1.25884 0.95812 1.01164 1.02410 1.70180 0.97843 1.48975 1.42022 0.85152 0.77221 0.78368 0.79082 1.21307 1.21829 1.19206 1.21186 0.88593 0.96651 0.92590 1.20737 0.96614 0.93483 1.01635 0.92175 0.93496 0.91260 0.94307 0.92219 0.93104 0.89627 0.91337 0.89388 0.90396 0.92853 0.74688 0.93760 0.92797 0.88885 0.89825 0.86993 0.98188 0.92438 0.94134 0.96610 0.92225 0.91215 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.77 71.98 0.70 -1.21 16 2 C -0.13 -2.17 4.12 30.59 0.13 -2.04 16 3 C -0.07 -0.88 2.92 -10.07 -0.03 -0.91 16 4 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 5 C -0.12 -1.42 5.55 31.67 0.18 -1.24 16 6 C -0.12 -1.32 6.91 31.89 0.22 -1.10 16 7 C -0.12 -1.86 6.31 31.67 0.20 -1.66 16 8 C -0.11 -1.55 3.29 -10.81 -0.04 -1.59 16 9 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 10 C 0.52 11.59 4.69 87.66 0.41 12.00 16 11 O -0.59 -19.15 15.04 -3.03 -0.05 -19.19 16 12 N -0.72 -13.37 4.98 -463.07 -2.31 -15.68 16 13 C 0.13 3.26 5.66 86.38 0.49 3.75 16 14 C -0.08 -1.75 5.32 29.85 0.16 -1.59 16 15 C -0.12 -4.00 5.11 -15.14 -0.08 -4.08 16 16 C -0.18 -6.89 9.47 27.10 0.26 -6.64 16 17 C 0.21 10.61 5.20 85.42 0.44 11.06 16 18 N -0.62 -32.42 3.00 -703.04 -2.11 -34.53 16 19 C -0.26 -14.55 9.72 84.03 0.82 -13.74 16 20 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 21 C -0.06 -3.35 5.09 84.86 0.43 -2.91 16 22 N -0.94 -57.37 10.94 21.65 0.24 -57.13 16 23 Si 0.97 45.74 29.57 68.60 2.03 47.77 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.14 5.82 6.59 86.32 0.57 6.39 16 28 C -0.09 -2.91 5.95 29.72 0.18 -2.73 16 29 H 0.06 0.72 7.52 -2.39 -0.02 0.71 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.04 0.91 7.13 -2.39 -0.02 0.89 16 33 H 0.06 1.04 6.78 -2.38 -0.02 1.03 16 34 H 0.05 0.81 7.75 -2.39 -0.02 0.79 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 1.21 6.88 -2.39 -0.02 1.20 16 40 H 0.42 4.73 8.47 -92.71 -0.79 3.94 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.48 8.11 -2.39 -0.02 1.46 16 43 H 0.09 1.72 8.11 -2.39 -0.02 1.70 16 44 H 0.08 1.69 7.78 -2.39 -0.02 1.67 16 45 H 0.11 3.85 7.73 -2.91 -0.02 3.83 16 46 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 47 H 0.06 3.29 6.39 -2.38 -0.02 3.27 16 48 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 49 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.06 2.46 7.96 -2.39 -0.02 2.45 16 51 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 52 H 0.08 2.35 8.11 -2.39 -0.02 2.33 16 Total: -1.00 -73.24 399.13 2.92 -70.31 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.09 Total: 16.70 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.04 Total: -8.25 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -4.18 Total: -107.34 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.05 Total: -19.19 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.24 2.92 -70.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161126098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.250 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds